Guide to the Human Genome
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Name: NLRC4 Sequence: fasta or formatted (1024aa) NCBI GI: 40788015
Description:

caspase recruitment domain protein 12

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         55           2
 C cysteine            2.2         23           2
 D aspartate           5.2         53           4
 E glutamate           6.7         69           2
 F phenylalanine       5.7         58           2
 G glycine             5.6         57           2
 H histidine           2.8         29           3
 I isoleucine          5.8         59           2
 K lysine              7.0         72           2
 L leucine            14.6        150           3
 M methionine          2.2         23           1
 N asparagine          4.6         47           1
 P proline             2.3         24           1
 Q glutamine           5.0         51           2
 R arginine            3.9         40           2
 S serine              7.4         76           2
 T threonine           5.6         57           4
 V valine              4.8         49           2
 W tryptophan          1.1         11           1
 Y tyrosine            2.1         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caspase recruitment domain protein 12 
NAIP                  0.091   NLR family, apoptosis inhibitory protein isoform 2 ...
NAIP                  0.091   NLR family, apoptosis inhibitory protein isoform 1 ...
LRRC31                0.018   leucine rich repeat containing 31 
NLRP2                 0.015   NLR family, pyrin domain containing 2 
NLRP9                 0.014   NLR family, pyrin domain containing 9 
LRRC1                 0.013   leucine rich repeat containing 1 
NOD1                  0.013   nucleotide-binding oligomerization domain containing ...
NOD2                  0.013   nucleotide-binding oligomerization domain containing...
NLRP10                0.012   NLR family, pyrin domain containing 10 
NLRP13                0.012   NACHT, leucine rich repeat and PYD containing 13 [H...
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
LOC401387             0.011   leucine-rich repeat and death domain-containing pro...
NLRP3                 0.010   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP7                 0.010   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP7                 0.010   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP7                 0.010   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP12                0.010   NLR family, pyrin domain containing 12 isoform 2 [Ho...
BIRC2                 0.010   baculoviral IAP repeat-containing protein 2 
NLRP3                 0.010   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.010   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP3                 0.010   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP3                 0.010   NLR family, pyrin domain containing 3 isoform b [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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