Guide to the Human Genome
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Name: CASP1 Sequence: fasta or formatted (311aa) NCBI GI: 15431330
Description:

caspase 1 isoform gamma precursor

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
Pyrin and Associated Functions

Other entries for this name:
alt prot [404aa] caspase 1 isoform alpha precursor
alt prot [263aa] caspase 1 isoform delta
alt prot [88aa] caspase 1 isoform epsilon
alt prot [383aa] caspase 1 isoform beta precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         18           1
 C cysteine            2.9          9           1
 D aspartate           5.8         18           2
 E glutamate           7.7         24           2
 F phenylalanine       5.1         16           1
 G glycine             5.5         17           1
 H histidine           2.6          8           1
 I isoleucine          6.8         21           3
 K lysine              7.1         22           2
 L leucine             6.8         21           2
 M methionine          3.9         12           1
 N asparagine          3.5         11           1
 P proline             5.1         16           1
 Q glutamine           3.5         11           1
 R arginine            5.5         17           2
 S serine              8.4         26           2
 T threonine           6.1         19           2
 V valine              5.8         18           2
 W tryptophan          1.0          3           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caspase 1 isoform gamma precursor 
CASP1                 0.942   caspase 1 isoform beta precursor 
CASP1                 0.942   caspase 1 isoform alpha precursor 
CASP1                 0.802   caspase 1 isoform delta 
CASP4                 0.514   caspase 4 isoform gamma precursor 
CASP4                 0.514   caspase 4 isoform alpha precursor 
CASP5                 0.491   caspase 5 isoform f precursor 
CASP5                 0.491   caspase 5 isoform c 
CASP5                 0.491   caspase 5 isoform b precursor 
CASP5                 0.491   caspase 5 isoform a precursor 
CASP5                 0.389   caspase 5 isoform d 
CASP1                 0.209   caspase 1 isoform epsilon 
CASP2                 0.140   caspase 2 isoform 1 preproprotein 
CASP3                 0.091   caspase 3 preproprotein 
CASP3                 0.091   caspase 3 preproprotein 
CASP14                0.091   caspase 14 precursor 
CASP9                 0.086   caspase 9 isoform alpha preproprotein 
CASP10                0.086   caspase 10 isoform d preproprotein 
CASP10                0.086   caspase 10 isoform b preproprotein 
CASP10                0.084   caspase 10 isoform a preproprotein 
CASP7                 0.072   caspase 7 isoform delta 
CASP7                 0.072   caspase 7 isoform alpha 
CASP7                 0.072   caspase 7 isoform alpha precursor 
CASP8                 0.066   caspase 8 isoform G precursor 
CASP8                 0.066   caspase 8 isoform B precursor 
CASP8                 0.066   caspase 8 isoform C precursor 
CASP8                 0.066   caspase 8 isoform C precursor 
CASP8                 0.066   caspase 8 isoform A precursor 
CASP6                 0.066   caspase 6 isoform alpha preproprotein 
CARD16                0.059   caspase-1 dominant-negative inhibitor pseudo-ICE iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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