Guide to the Human Genome
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Name: TBX1 Sequence: fasta or formatted (495aa) NCBI GI: 18104952
Description:

T-box 1 isoform C

Referenced in:

T Box Family

Other entries for this name:
alt prot [398aa] T-box 1 isoform A
alt prot [372aa] T-box 1 isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.8         83          15
 C cysteine            0.8          4           1
 D aspartate           4.8         24           2
 E glutamate           3.8         19           2
 F phenylalanine       4.0         20           1
 G glycine             8.1         40           2
 H histidine           4.8         24           5
 I isoleucine          1.2          6           2
 K lysine              4.2         21           2
 L leucine             6.1         30           2
 M methionine          2.6         13           1
 N asparagine          2.6         13           2
 P proline            13.7         68           6
 Q glutamine           2.2         11           1
 R arginine            5.5         27           2
 S serine              6.1         30           3
 T threonine           3.2         16           1
 V valine              4.4         22           2
 W tryptophan          0.8          4           1
 Y tyrosine            4.0         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-box 1 isoform C 
TBX1                  0.671   T-box 1 isoform A 
TBX1                  0.667   T-box 1 isoform B 
TBX10                 0.358   T-box 10 
TBX4                  0.232   T-box 4 
TBX20                 0.228   T-box transcription factor TBX20 
TBX2                  0.221   T-box 2 
TBX18                 0.217   T-box 18 
TBX15                 0.214   T-box 15 
TBX5                  0.213   T-box 5 isoform 2 
TBX5                  0.213   T-box 5 isoform 1 
TBX5                  0.213   T-box 5 isoform 1 
TBX5                  0.210   T-box 5 isoform 3 
TBX3                  0.204   T-box 3 protein isoform 1 
TBX6                  0.203   T-box 6 
TBX22                 0.195   T-box 22 isoform 1 
TBX22                 0.195   T-box 22 isoform 1 
TBX3                  0.193   T-box 3 protein isoform 2 
TBX21                 0.169   T-box 21 
MGA                   0.168   MAX gene associated 
TBX22                 0.159   T-box 22 isoform 2 
EOMES                 0.157   eomesodermin 
TBR1                  0.147   T-box, brain, 1 
T                     0.145   transcription factor T 
TBX19                 0.142   T-box 19 
LOC100293898          0.048   PREDICTED: hypothetical protein 
MNX1                  0.029   homeo box HB9 
GSX2                  0.027   GS homeobox 2 
TAF4                  0.025   TBP-associated factor 4 
RANBP9                0.024   RAN binding protein 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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