Guide to the Human Genome
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Name: SDCBP Sequence: fasta or formatted (298aa) NCBI GI: 55749490
Description:

syntenin isoform 1

Referenced in:

PDZ Domain

Other entries for this name:
alt prot [292aa] syntenin isoform 2
alt prot [297aa] syntenin isoform 3
alt prot [297aa] syntenin isoform 3
alt mRNA [298aa] syntenin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         23           2
 C cysteine            1.0          3           1
 D aspartate           5.0         15           1
 E glutamate           5.0         15           3
 F phenylalanine       3.0          9           1
 G glycine             7.4         22           1
 H histidine           2.3          7           1
 I isoleucine         10.4         31           2
 K lysine              5.7         17           1
 L leucine             8.1         24           2
 M methionine          3.0          9           1
 N asparagine          5.4         16           1
 P proline             5.0         15           1
 Q glutamine           4.7         14           1
 R arginine            4.4         13           2
 S serine              8.1         24           2
 T threonine           4.7         14           1
 V valine              7.0         21           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   syntenin isoform 1 
SDCBP                 1.000   syntenin isoform 1 
SDCBP                 0.988   syntenin isoform 3 
SDCBP                 0.988   syntenin isoform 3 
SDCBP                 0.970   syntenin isoform 2 
SDCBP2                0.568   syndecan binding protein 2 isoform a 
SDCBP2                0.487   syndecan binding protein 2 isoform b 
APBA1                 0.066   amyloid beta A4 precursor protein-binding, family A,...
APBA2                 0.064   amyloid beta A4 precursor protein-binding, family A...
APBA2                 0.064   amyloid beta A4 precursor protein-binding, family A,...
APBA3                 0.057   amyloid beta (A4) precursor protein-binding, family ...
DLG1                  0.043   discs, large homolog 1 isoform 1 
DLG1                  0.043   discs, large homolog 1 isoform 2 
DLG3                  0.039   synapse-associated protein 102 isoform b 
DLG3                  0.039   synapse-associated protein 102 isoform a 
SCRIB                 0.036   scribble isoform b 
SCRIB                 0.036   scribble isoform a 
DLG2                  0.034   chapsyn-110 isoform 3 
DLG2                  0.034   chapsyn-110 isoform 1 
DLG2                  0.034   chapsyn-110 isoform 2 
TAX1BP3               0.034   Tax1 binding protein 3 
ARHGEF12              0.032   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
DLG4                  0.032   post-synaptic density protein 95 isoform 1 
DLG4                  0.032   post-synaptic density protein 95 isoform 2 
PDZK1                 0.032   PDZ domain containing 1 
LOC100133567          0.030   PREDICTED: similar to Rap guanine nucleotide exchan...
IL16                  0.030   interleukin 16 isoform 2 
SNTG1                 0.030   syntrophin, gamma 1 
RAPGEF2               0.030   Rap guanine nucleotide exchange factor 2 
DLG5                  0.030   discs large homolog 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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