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Search of human proteins with 54873602
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
(426 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54873602 hypothetical protein LOC220382 [Homo sapiens] 873 0.0
gi|31543095 hypothetical protein LOC90050 [Homo sapiens] 57 4e-08
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 55 1e-07
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 55 1e-07
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 55 1e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 52 8e-07
gi|110832843 TBP-associated factor 4 [Homo sapiens] 52 1e-06
gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens] 52 1e-06
gi|239752280 PREDICTED: similar to family with sequence similari... 51 2e-06
gi|210032463 family with sequence similarity 48, member B2 [Homo... 51 2e-06
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 51 2e-06
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 51 2e-06
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 51 2e-06
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 51 2e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 51 2e-06
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 50 4e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 49 7e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 1e-05
gi|84570137 homeobox B3 [Homo sapiens] 48 2e-05
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 48 2e-05
gi|33946327 nucleoporin 214kDa [Homo sapiens] 47 3e-05
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 47 3e-05
gi|157426823 NK2 homeobox 4 [Homo sapiens] 47 3e-05
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 47 3e-05
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 47 4e-05
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 47 4e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 47 4e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 46 6e-05
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 46 6e-05
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 46 6e-05
>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
Length = 426
Score = 873 bits (2255), Expect = 0.0
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MAVQAALLSTHPFVPFGFGGSPDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEGGDVR 60
MAVQAALLSTHPFVPFGFGGSPDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEGGDVR
Sbjct: 1 MAVQAALLSTHPFVPFGFGGSPDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEGGDVR 60
Query: 61 EATRDLLSFIDSASSNIKLALDKPGKSKRKVNHRKYLQKQIKRCSGLMGAAPPGPPSPSA 120
EATRDLLSFIDSASSNIKLALDKPGKSKRKVNHRKYLQKQIKRCSGLMGAAPPGPPSPSA
Sbjct: 61 EATRDLLSFIDSASSNIKLALDKPGKSKRKVNHRKYLQKQIKRCSGLMGAAPPGPPSPSA 120
Query: 121 ADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAE 180
ADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAE
Sbjct: 121 ADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAE 180
Query: 181 PAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSRAGG 240
PAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSRAGG
Sbjct: 181 PAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSRAGG 240
Query: 241 GGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGP 300
GGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGP
Sbjct: 241 GGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGP 300
Query: 301 PELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADS 360
PELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADS
Sbjct: 301 PELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADS 360
Query: 361 PGGEDGRGHLASFAPFFPDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSDGVWEGAPGE 420
PGGEDGRGHLASFAPFFPDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSDGVWEGAPGE
Sbjct: 361 PGGEDGRGHLASFAPFFPDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSDGVWEGAPGE 420
Query: 421 EGAHRD 426
EGAHRD
Sbjct: 421 EGAHRD 426
>gi|31543095 hypothetical protein LOC90050 [Homo sapiens]
Length = 354
Score = 56.6 bits (135), Expect = 4e-08
Identities = 63/221 (28%), Positives = 82/221 (37%), Gaps = 65/221 (29%)
Query: 66 LLSFIDSASSNIKLALDKPGKSKRKVNHRKYLQKQIKRCSGLMGAAPPGPPSPSAA---- 121
LL+F++ ASS+IK ALDK +R V+HRKYLQKQ+KR S P G P +A
Sbjct: 72 LLNFVNLASSDIKAALDKSAPCRRSVDHRKYLQKQLKRFSQKYSRLPRGLPGRAAEPYLK 131
Query: 122 ----DTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPG 177
D P R L P ++P G + L L R P
Sbjct: 132 RGSEDRP--RRLLLDLGPD-SSPGGGGGCKEKVLRSPYREECLAKEQLPQ-----RQHPE 183
Query: 178 GAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSR 237
A+P +VP+R R LP SF+ EP
Sbjct: 184 AAQPG------------------------------------QVPMRKRQLPASFWEEPRP 207
Query: 238 AGG------GGCGP-SGPDVSLGDLEKGAEAVEFFELLGPD 271
GG GP GP +G + + E LGP+
Sbjct: 208 THSYHVGLEGGLGPREGPPY------EGKKNCKGLEPLGPE 242
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 55.1 bits (131), Expect = 1e-07
Identities = 94/347 (27%), Positives = 119/347 (34%), Gaps = 52/347 (14%)
Query: 106 GLMG-AAPPGPPS----PSAADTPAKRPLAAPSAPTVAAP----AHGKAAPRREASQAAA 156
GL G PPG P P P L P + P G P A +A A
Sbjct: 469 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 528
Query: 157 AASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGD--------VAGP 208
A LQ +A LR PG G P G G +G G GD V GP
Sbjct: 529 QAILQQARIA-----LRGPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGP 581
Query: 209 AGATAIPGARKVPLR--ARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFE 266
G T PG R P R +P + R G G G G E+G +
Sbjct: 582 PGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRG--ERGPQGPP--G 637
Query: 267 LLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPEL--EPGL--FEPPPAVVGNLLYPE 322
G D G + + P + P G RG P +PG+ + PP GN+
Sbjct: 638 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNM---G 694
Query: 323 PWSVPGCSPTKKSP----LTAPRGGLTLNEPLSPL-YPAAADSPGGEDGRGHLASFAPFF 377
P PG + +P L P+G + P P A PG + GH
Sbjct: 695 PQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSG 754
Query: 378 PDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSDGV--WEGAPGEEG 422
AL PP P + Y G +DGV +G+ GE+G
Sbjct: 755 EKGALGPPGPQGPIGYPGPRGVK--------GADGVRGLKGSKGEKG 793
Score = 38.9 bits (89), Expect = 0.009
Identities = 92/364 (25%), Positives = 105/364 (28%), Gaps = 87/364 (23%)
Query: 112 PPGPPSPSAADT----PAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAA 167
P GPP P D P +R T G P+ +
Sbjct: 944 PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGE-------- 995
Query: 168 LFDSLRHVPGGAEPAGGEVAAPAAGLGGA----GTGGAGGDVAGPAGATAIPGARKVP-- 221
R PG P G + AAG GA G G G GPAG PG R +P
Sbjct: 996 -----RGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGK-DGPAGLRGFPGERGLPGA 1049
Query: 222 LRARNL--------PPSFFTEPSRAGGGGC----------GPSGPDVSLGDLEKGAEAVE 263
A L PP P G G GP GP G EKGA +
Sbjct: 1050 QGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG--EKGAPGEK 1107
Query: 264 FFELLGPDYGAGTEAAVLLAAEPLDVFPAGA---------------------SVLRGPPE 302
GP AG + P PAG+ GPP
Sbjct: 1108 -----GPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG 1162
Query: 303 LEPGLFEP--PPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADS 360
PGL P P + G P P G K G P P+
Sbjct: 1163 -PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK-----GDEGARGFPGPPGPIGLQGLPG 1216
Query: 361 PGGEDG-RGHLASFAPFFPDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSDGVWE-GAP 418
P GE G G + P P PP P A + S+ GV E G P
Sbjct: 1217 PPGEKGENGDVGPMGP-------PGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP 1269
Query: 419 GEEG 422
GE G
Sbjct: 1270 GEAG 1273
Score = 34.7 bits (78), Expect = 0.17
Identities = 101/389 (25%), Positives = 125/389 (32%), Gaps = 103/389 (26%)
Query: 20 GSPDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEG--GDVREATRDLLSFIDSASSNI 77
G P +G G +KG E G P A + G +G G+ EA ++
Sbjct: 1252 GPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG-------PPGAAGP 1304
Query: 78 KLALDKPGKSKRKVNHRKYLQKQIKRCSGLMG-AAPPGPPSPSAADTPA--KRPLAAPSA 134
A PG K N G G PPG P P+ D K P
Sbjct: 1305 PGAKGPPGDDGPKGNPGPV---------GFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQ 1355
Query: 135 PTVAAPAHGKAAP-----RREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGEVAAP 189
P P+ G+A P +R AA A Q G AG E P
Sbjct: 1356 PGPPGPS-GEAGPPGPPGKRGPPGAAGAEGRQGEK------------GAKGEAGAE--GP 1400
Query: 190 AAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPD 249
G G G G GP G IPG P+ + LP G GP GP
Sbjct: 1401 PGKTGPVGPQGPAGK-PGPEGLRGIPG----PVGEQGLP---------GAAGQDGPPGP- 1445
Query: 250 VSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFE 309
+GP G L +P G+ +G P L GL
Sbjct: 1446 ------------------MGPPGLPG------LKGDP------GSKGEKGHPGL-IGLIG 1474
Query: 310 PPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADS-PGGEDGRG 368
PP G +PG T+ SP GG+ P PL P PG + +G
Sbjct: 1475 PP----GEQGEKGDRGLPG---TQGSPGAKGDGGIP--GPAGPLGPPGPPGLPGPQGPKG 1525
Query: 369 HLASFAPFFP--DCALPPPP----PPHQV 391
+ S P D LP PP PP +V
Sbjct: 1526 NKGSTGPAGQKGDSGLPGPPGSPGPPGEV 1554
Score = 33.9 bits (76), Expect = 0.29
Identities = 72/290 (24%), Positives = 94/290 (32%), Gaps = 77/290 (26%)
Query: 106 GLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSL 165
G MG PPGPP P P P P + + G + E +A
Sbjct: 1228 GPMG--PPGPPGPRGPQGP--NGADGPQGPPGSVGSVGGVGEKGEPGEA----------- 1272
Query: 166 AALFDSLRHVPGGAEPAGGEVAAPAAGLGGA-GTGGAGGDVAGPAGATAIPGARKVP--- 221
G P G AG+GG G G G+ AGP GA PGA+ P
Sbjct: 1273 -----------GNPGPPG------EAGVGGPKGERGEKGE-AGPPGAAGPPGAKGPPGDD 1314
Query: 222 -LRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAV 280
+ P F +P G GP+G D GD + + + GP +G
Sbjct: 1315 GPKGNPGPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDPGQ----PGPPGPSG----- 1363
Query: 281 LLAAEPLDVFPAGASVLRGPP--------ELEPGL-----FEPPPAVVGNLLYPEPWSVP 327
+ P G RGPP + E G E PP G + P P
Sbjct: 1364 -------EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1416
Query: 328 GCSPTKKSPLTAPRGGLT----LNEPLSPL----YPAAADSPGGEDGRGH 369
G + P GL + P P+ P PG + +GH
Sbjct: 1417 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGH 1466
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 55.1 bits (131), Expect = 1e-07
Identities = 94/347 (27%), Positives = 119/347 (34%), Gaps = 52/347 (14%)
Query: 106 GLMG-AAPPGPPS----PSAADTPAKRPLAAPSAPTVAAP----AHGKAAPRREASQAAA 156
GL G PPG P P P L P + P G P A +A A
Sbjct: 418 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 477
Query: 157 AASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGD--------VAGP 208
A LQ +A LR PG G P G G +G G GD V GP
Sbjct: 478 QAILQQARIA-----LRGPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGP 530
Query: 209 AGATAIPGARKVPLR--ARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFE 266
G T PG R P R +P + R G G G G E+G +
Sbjct: 531 PGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRG--ERGPQGPP--G 586
Query: 267 LLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPEL--EPGL--FEPPPAVVGNLLYPE 322
G D G + + P + P G RG P +PG+ + PP GN+
Sbjct: 587 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNM---G 643
Query: 323 PWSVPGCSPTKKSP----LTAPRGGLTLNEPLSPL-YPAAADSPGGEDGRGHLASFAPFF 377
P PG + +P L P+G + P P A PG + GH
Sbjct: 644 PQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSG 703
Query: 378 PDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSDGV--WEGAPGEEG 422
AL PP P + Y G +DGV +G+ GE+G
Sbjct: 704 EKGALGPPGPQGPIGYPGPRGVK--------GADGVRGLKGSKGEKG 742
Score = 38.9 bits (89), Expect = 0.009
Identities = 92/364 (25%), Positives = 105/364 (28%), Gaps = 87/364 (23%)
Query: 112 PPGPPSPSAADT----PAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAA 167
P GPP P D P +R T G P+ +
Sbjct: 893 PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGE-------- 944
Query: 168 LFDSLRHVPGGAEPAGGEVAAPAAGLGGA----GTGGAGGDVAGPAGATAIPGARKVP-- 221
R PG P G + AAG GA G G G GPAG PG R +P
Sbjct: 945 -----RGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGK-DGPAGLRGFPGERGLPGA 998
Query: 222 LRARNL--------PPSFFTEPSRAGGGGC----------GPSGPDVSLGDLEKGAEAVE 263
A L PP P G G GP GP G EKGA +
Sbjct: 999 QGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG--EKGAPGEK 1056
Query: 264 FFELLGPDYGAGTEAAVLLAAEPLDVFPAGA---------------------SVLRGPPE 302
GP AG + P PAG+ GPP
Sbjct: 1057 -----GPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG 1111
Query: 303 LEPGLFEP--PPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADS 360
PGL P P + G P P G K G P P+
Sbjct: 1112 -PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK-----GDEGARGFPGPPGPIGLQGLPG 1165
Query: 361 PGGEDG-RGHLASFAPFFPDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSDGVWE-GAP 418
P GE G G + P P PP P A + S+ GV E G P
Sbjct: 1166 PPGEKGENGDVGPMGP-------PGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP 1218
Query: 419 GEEG 422
GE G
Sbjct: 1219 GEAG 1222
Score = 34.7 bits (78), Expect = 0.17
Identities = 101/389 (25%), Positives = 125/389 (32%), Gaps = 103/389 (26%)
Query: 20 GSPDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEG--GDVREATRDLLSFIDSASSNI 77
G P +G G +KG E G P A + G +G G+ EA ++
Sbjct: 1201 GPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG-------PPGAAGP 1253
Query: 78 KLALDKPGKSKRKVNHRKYLQKQIKRCSGLMG-AAPPGPPSPSAADTPA--KRPLAAPSA 134
A PG K N G G PPG P P+ D K P
Sbjct: 1254 PGAKGPPGDDGPKGNPGPV---------GFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQ 1304
Query: 135 PTVAAPAHGKAAP-----RREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGEVAAP 189
P P+ G+A P +R AA A Q G AG E P
Sbjct: 1305 PGPPGPS-GEAGPPGPPGKRGPPGAAGAEGRQGEK------------GAKGEAGAE--GP 1349
Query: 190 AAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPD 249
G G G G GP G IPG P+ + LP G GP GP
Sbjct: 1350 PGKTGPVGPQGPAGK-PGPEGLRGIPG----PVGEQGLP---------GAAGQDGPPGP- 1394
Query: 250 VSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFE 309
+GP G L +P G+ +G P L GL
Sbjct: 1395 ------------------MGPPGLPG------LKGDP------GSKGEKGHPGL-IGLIG 1423
Query: 310 PPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADS-PGGEDGRG 368
PP G +PG T+ SP GG+ P PL P PG + +G
Sbjct: 1424 PP----GEQGEKGDRGLPG---TQGSPGAKGDGGIP--GPAGPLGPPGPPGLPGPQGPKG 1474
Query: 369 HLASFAPFFP--DCALPPPP----PPHQV 391
+ S P D LP PP PP +V
Sbjct: 1475 NKGSTGPAGQKGDSGLPGPPGSPGPPGEV 1503
Score = 33.9 bits (76), Expect = 0.29
Identities = 72/290 (24%), Positives = 94/290 (32%), Gaps = 77/290 (26%)
Query: 106 GLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSL 165
G MG PPGPP P P P P + + G + E +A
Sbjct: 1177 GPMG--PPGPPGPRGPQGP--NGADGPQGPPGSVGSVGGVGEKGEPGEA----------- 1221
Query: 166 AALFDSLRHVPGGAEPAGGEVAAPAAGLGGA-GTGGAGGDVAGPAGATAIPGARKVP--- 221
G P G AG+GG G G G+ AGP GA PGA+ P
Sbjct: 1222 -----------GNPGPPG------EAGVGGPKGERGEKGE-AGPPGAAGPPGAKGPPGDD 1263
Query: 222 -LRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAV 280
+ P F +P G GP+G D GD + + + GP +G
Sbjct: 1264 GPKGNPGPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDPGQ----PGPPGPSG----- 1312
Query: 281 LLAAEPLDVFPAGASVLRGPP--------ELEPGL-----FEPPPAVVGNLLYPEPWSVP 327
+ P G RGPP + E G E PP G + P P
Sbjct: 1313 -------EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1365
Query: 328 GCSPTKKSPLTAPRGGLT----LNEPLSPL----YPAAADSPGGEDGRGH 369
G + P GL + P P+ P PG + +GH
Sbjct: 1366 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGH 1415
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 55.1 bits (131), Expect = 1e-07
Identities = 94/347 (27%), Positives = 119/347 (34%), Gaps = 52/347 (14%)
Query: 106 GLMG-AAPPGPPS----PSAADTPAKRPLAAPSAPTVAAP----AHGKAAPRREASQAAA 156
GL G PPG P P P L P + P G P A +A A
Sbjct: 457 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 516
Query: 157 AASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGD--------VAGP 208
A LQ +A LR PG G P G G +G G GD V GP
Sbjct: 517 QAILQQARIA-----LRGPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGP 569
Query: 209 AGATAIPGARKVPLR--ARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFE 266
G T PG R P R +P + R G G G G E+G +
Sbjct: 570 PGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRG--ERGPQGPP--G 625
Query: 267 LLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPEL--EPGL--FEPPPAVVGNLLYPE 322
G D G + + P + P G RG P +PG+ + PP GN+
Sbjct: 626 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNM---G 682
Query: 323 PWSVPGCSPTKKSP----LTAPRGGLTLNEPLSPL-YPAAADSPGGEDGRGHLASFAPFF 377
P PG + +P L P+G + P P A PG + GH
Sbjct: 683 PQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSG 742
Query: 378 PDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSDGV--WEGAPGEEG 422
AL PP P + Y G +DGV +G+ GE+G
Sbjct: 743 EKGALGPPGPQGPIGYPGPRGVK--------GADGVRGLKGSKGEKG 781
Score = 38.9 bits (89), Expect = 0.009
Identities = 92/364 (25%), Positives = 105/364 (28%), Gaps = 87/364 (23%)
Query: 112 PPGPPSPSAADT----PAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAA 167
P GPP P D P +R T G P+ +
Sbjct: 932 PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGE-------- 983
Query: 168 LFDSLRHVPGGAEPAGGEVAAPAAGLGGA----GTGGAGGDVAGPAGATAIPGARKVP-- 221
R PG P G + AAG GA G G G GPAG PG R +P
Sbjct: 984 -----RGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGK-DGPAGLRGFPGERGLPGA 1037
Query: 222 LRARNL--------PPSFFTEPSRAGGGGC----------GPSGPDVSLGDLEKGAEAVE 263
A L PP P G G GP GP G EKGA +
Sbjct: 1038 QGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG--EKGAPGEK 1095
Query: 264 FFELLGPDYGAGTEAAVLLAAEPLDVFPAGA---------------------SVLRGPPE 302
GP AG + P PAG+ GPP
Sbjct: 1096 -----GPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG 1150
Query: 303 LEPGLFEP--PPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADS 360
PGL P P + G P P G K G P P+
Sbjct: 1151 -PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK-----GDEGARGFPGPPGPIGLQGLPG 1204
Query: 361 PGGEDG-RGHLASFAPFFPDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSDGVWE-GAP 418
P GE G G + P P PP P A + S+ GV E G P
Sbjct: 1205 PPGEKGENGDVGPMGP-------PGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP 1257
Query: 419 GEEG 422
GE G
Sbjct: 1258 GEAG 1261
Score = 34.7 bits (78), Expect = 0.17
Identities = 101/389 (25%), Positives = 125/389 (32%), Gaps = 103/389 (26%)
Query: 20 GSPDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEG--GDVREATRDLLSFIDSASSNI 77
G P +G G +KG E G P A + G +G G+ EA ++
Sbjct: 1240 GPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG-------PPGAAGP 1292
Query: 78 KLALDKPGKSKRKVNHRKYLQKQIKRCSGLMG-AAPPGPPSPSAADTPA--KRPLAAPSA 134
A PG K N G G PPG P P+ D K P
Sbjct: 1293 PGAKGPPGDDGPKGNPGPV---------GFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQ 1343
Query: 135 PTVAAPAHGKAAP-----RREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGEVAAP 189
P P+ G+A P +R AA A Q G AG E P
Sbjct: 1344 PGPPGPS-GEAGPPGPPGKRGPPGAAGAEGRQGEK------------GAKGEAGAE--GP 1388
Query: 190 AAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPD 249
G G G G GP G IPG P+ + LP G GP GP
Sbjct: 1389 PGKTGPVGPQGPAGK-PGPEGLRGIPG----PVGEQGLP---------GAAGQDGPPGP- 1433
Query: 250 VSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFE 309
+GP G L +P G+ +G P L GL
Sbjct: 1434 ------------------MGPPGLPG------LKGDP------GSKGEKGHPGL-IGLIG 1462
Query: 310 PPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADS-PGGEDGRG 368
PP G +PG T+ SP GG+ P PL P PG + +G
Sbjct: 1463 PP----GEQGEKGDRGLPG---TQGSPGAKGDGGIP--GPAGPLGPPGPPGLPGPQGPKG 1513
Query: 369 HLASFAPFFP--DCALPPPP----PPHQV 391
+ S P D LP PP PP +V
Sbjct: 1514 NKGSTGPAGQKGDSGLPGPPGSPGPPGEV 1542
Score = 33.9 bits (76), Expect = 0.29
Identities = 72/290 (24%), Positives = 94/290 (32%), Gaps = 77/290 (26%)
Query: 106 GLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSL 165
G MG PPGPP P P P P + + G + E +A
Sbjct: 1216 GPMG--PPGPPGPRGPQGP--NGADGPQGPPGSVGSVGGVGEKGEPGEA----------- 1260
Query: 166 AALFDSLRHVPGGAEPAGGEVAAPAAGLGGA-GTGGAGGDVAGPAGATAIPGARKVP--- 221
G P G AG+GG G G G+ AGP GA PGA+ P
Sbjct: 1261 -----------GNPGPPG------EAGVGGPKGERGEKGE-AGPPGAAGPPGAKGPPGDD 1302
Query: 222 -LRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAV 280
+ P F +P G GP+G D GD + + + GP +G
Sbjct: 1303 GPKGNPGPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDPGQ----PGPPGPSG----- 1351
Query: 281 LLAAEPLDVFPAGASVLRGPP--------ELEPGL-----FEPPPAVVGNLLYPEPWSVP 327
+ P G RGPP + E G E PP G + P P
Sbjct: 1352 -------EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1404
Query: 328 GCSPTKKSPLTAPRGGLT----LNEPLSPL----YPAAADSPGGEDGRGH 369
G + P GL + P P+ P PG + +GH
Sbjct: 1405 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGH 1454
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 52.4 bits (124), Expect = 8e-07
Identities = 104/376 (27%), Positives = 126/376 (33%), Gaps = 74/376 (19%)
Query: 12 PFVPFGFGGSPDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEGGDVREATRDLLSFID 71
P P G G+P G GA G D G GAP + G G + D
Sbjct: 693 PAGPRGANGAP-GNDGAKG--DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKG-----D 744
Query: 72 SASSNIKLALDKPGKSKRKVNHRKYLQKQIKRCSGLMGAAPPGPPSPSAADTPAKRPLAA 131
+ K A PGK + GL G P GPP P+ A P + +
Sbjct: 745 RGDAGPKGADGSPGKDGVR---------------GLTG--PIGPPGPAGA--PGDKGESG 785
Query: 132 PSAPTVAAPAHGKAAPRREASQAAAA-------------ASLQSRSLAALFDSLRHVPGG 178
PS P A G R E A A + A D+ PG
Sbjct: 786 PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDA--GPPGP 843
Query: 179 AEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSRA 238
A PAG P +G G GA G AGP GAT PGA R PP PS
Sbjct: 844 AGPAGPP--GPIGNVGAPGAKGARGS-AGPPGATGFPGAA-----GRVGPPG----PSGN 891
Query: 239 GG--GGCGPSGPDVSLGDLEKGAEAVEFFEL-----LGPDYGAGTEAAVLLAAEPLDVFP 291
G G GP+G + G + A E+ GP G+ A A P P
Sbjct: 892 AGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGP 951
Query: 292 AGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLS 351
G + RG L P G +P +PG P+ + P G P
Sbjct: 952 QGIAGQRGVVGL--------PGQRGERGFP---GLPG--PSGEPGKQGPSGASGERGPPG 998
Query: 352 PLYPAAADSPGGEDGR 367
P+ P P GE GR
Sbjct: 999 PMGPPGLAGPPGESGR 1014
Score = 50.4 bits (119), Expect = 3e-06
Identities = 92/354 (25%), Positives = 113/354 (31%), Gaps = 57/354 (16%)
Query: 22 PDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEGGDVREATRDLLSFIDSASSNIKLAL 81
P G G GA +G + E G P A +G G D + + + + K
Sbjct: 786 PSGPAGPTGA--RGAPGDRGEPGPPGPAGFAGPPGADGQPGAKG-----EPGDAGAKGDA 838
Query: 82 DKPGKSKRKVNHRKYLQKQIKRCSGLMGAA-PPG----PPSPSAADTPAKRPLAAPSAPT 136
PG + G G+A PPG P + P A P P
Sbjct: 839 GPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 898
Query: 137 VAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGA 196
A G PR E A + PG PAG + + A G GA
Sbjct: 899 GPAGKEGGKGPRGETGPAGRPGEVGP-------------PGPPGPAGEKGSPGADGPAGA 945
Query: 197 -GTGGAGGDVAGPAGATAIPGARKVPLRARNLP--PSFFTEPSRAG-GGGCGPSGPDVSL 252
GT G G +AG G +PG R R P P EP + G G G GP +
Sbjct: 946 PGTPGPQG-IAGQRGVVGLPGQR----GERGFPGLPGPSGEPGKQGPSGASGERGPPGPM 1000
Query: 253 GDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEPPP 312
G L GP +G E A P GA RG E G PP
Sbjct: 1001 GPP----------GLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRG----ETGPAGPPG 1046
Query: 313 AVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADSPGGEDG 366
A P PG P + + RG P P+ P A P G G
Sbjct: 1047 A-------PGAPGAPG--PVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG 1091
Score = 46.6 bits (109), Expect = 4e-05
Identities = 87/296 (29%), Positives = 93/296 (31%), Gaps = 63/296 (21%)
Query: 106 GLMGAA-PPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRS 164
G GAA PPGP P A P A A G+A P+
Sbjct: 326 GATGAAGPPGPTGP-----------AGPPGFPGAVGAKGEAGPQGPRGSEGP-------- 366
Query: 165 LAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGP--AGATAIPGARKVPL 222
+R PG PAG A PA G G GA G P AGA PGAR
Sbjct: 367 -----QGVRGEPGPPGPAGA--AGPAGNPGADGQPGAKGANGAPGIAGAPGFPGAR---- 415
Query: 223 RARNLPPSFFTEPSRAGG--GGCGPSGPDVSLGDL----EKGAEAVEFFELLGPDYGAGT 276
PS P G G G G S GD E G V+ GP AG
Sbjct: 416 -----GPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQ-----GPPGPAGE 465
Query: 277 EAAVLLAAEPLDVFPAGASVLRGPPELEPGL----FEPPPAVVGNLLYPEPWSVPGCSPT 332
E EP G + L GPP G F V G PG +
Sbjct: 466 EGKRGARGEP------GPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGP 519
Query: 333 KKSPLTAPRGGLTLNEPLSPLYPAAADSPGGEDGRGHLASFAPFFPDCALPPPPPP 388
K SP A R G E P SPG G P D PP PP
Sbjct: 520 KGSPGEAGRPG----EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPP 571
Score = 42.0 bits (97), Expect = 0.001
Identities = 75/276 (27%), Positives = 100/276 (36%), Gaps = 39/276 (14%)
Query: 102 KRCSGLMGAAPP----GPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAA 157
K +G G+ P GPP P+ D P P A G P+ A + A
Sbjct: 538 KGLTGSPGSPGPDGKTGPPGPAGQDGRPGPP--GPPGARGQAGVMGFPGPKGAAGEPGKA 595
Query: 158 ASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGG-AGTGGAGGDVAGPAGATAIPG 216
+ PG PAG + A A G G AG G G+ GPAG+ PG
Sbjct: 596 GER----------GVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGE-QGPAGS---PG 641
Query: 217 ARKVPLRARNLPPSFFTEPSRAG-GGGCGPSGPDVSLGDL----EKGAEAVEFFELLGPD 271
+ +P A PP +P G G G GP + G+ E+G + GP
Sbjct: 642 FQGLPGPAG--PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPP-----GPA 694
Query: 272 YGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSP 331
G A D GA +G P L+ G+ P G P P G +
Sbjct: 695 GPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQ-GM----PGERGAAGLPGPKGDRGDAG 749
Query: 332 TKKSPLTAPRGGLT-LNEPLSPLYPAAADSPGGEDG 366
K + + + G+ L P+ P PA A GE G
Sbjct: 750 PKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESG 785
Score = 40.4 bits (93), Expect = 0.003
Identities = 61/221 (27%), Positives = 74/221 (33%), Gaps = 46/221 (20%)
Query: 112 PPGPPSPSAADTP-----AKRPLAAPSAPTV--------------AAPAHGKAAPRREAS 152
PPGP P A+ AK AP AP AA G R +A
Sbjct: 690 PPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAG 749
Query: 153 QAAAAASLQSRSLAALFDSLRHV-PGGAEPAGGEVAAPAAGLGGAGTGGAGGD------- 204
A S + L + P GA GE + P+ G G GA GD
Sbjct: 750 PKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGE-SGPSGPAGPTGARGAPGDRGEPGPP 808
Query: 205 ----VAGPAGATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAE 260
AGP GA PGA+ P A + G GP+GP +G++ GA
Sbjct: 809 GPAGFAGPPGADGQPGAKGEPGDAG-------AKGDAGPPGPAGPAGPPGPIGNV--GAP 859
Query: 261 AVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPP 301
+ G AG A V P G S GPP
Sbjct: 860 GAK-----GARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP 895
Score = 34.7 bits (78), Expect = 0.17
Identities = 85/315 (26%), Positives = 96/315 (30%), Gaps = 77/315 (24%)
Query: 105 SGLMGA-APPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSR 163
SG MG PPGPP + D A +P P P + P A L
Sbjct: 214 SGPMGPRGPPGPPGKNGDDGEAGKP-GRPGERGPPGPQGARGLP--------GTAGLPGM 264
Query: 164 SLAALFDSLRHVPGGAEPAG--------GEVAAP--------------------AAGLGG 195
F L G A PAG GE AP A G
Sbjct: 265 KGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGN 324
Query: 196 AGTGGAGGDVA--GPAGATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLG 253
G GA G GPAG PGA A P +E + G GP GP + G
Sbjct: 325 DGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPR-GSEGPQGVRGEPGPPGPAGAAG 383
Query: 254 DL-EKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEPPP 312
GA+ G G A +A P FP GA GP PG PP
Sbjct: 384 PAGNPGAD--------GQPGAKGANGAPGIAGAP--GFP-GARGPSGPQ--GPG---GPP 427
Query: 313 AVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADSPGGEDG-RGHLA 371
GN P G + K P P+ P GE+G RG
Sbjct: 428 GPKGNSGEPGAPGSKGDTGAKGEP--------------GPVGVQGPPGPAGEEGKRGARG 473
Query: 372 SFAPFFPDCALPPPP 386
P LP PP
Sbjct: 474 EPGP----TGLPGPP 484
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 52.0 bits (123), Expect = 1e-06
Identities = 70/271 (25%), Positives = 93/271 (34%), Gaps = 32/271 (11%)
Query: 106 GLMGAAPPGPPSPSA---ADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQS 162
G GAAP PP+ A P + +P P V A AA R + +A +
Sbjct: 81 GAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPV 140
Query: 163 RSLAALFDSLRHVPGG-AEPAGGEVAAPAAGLG-----GAGTGGAGGDVAGPAGATAIPG 216
+ AA+ P G A+PAG A AG G G G G G AGP A + G
Sbjct: 141 PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNG 200
Query: 217 ARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGT 276
+ + + + A +GP +L L K A + P GA
Sbjct: 201 SAAL----------LNSHHAAAPAVSLVNNGP-AALLPLPKPAAPGTVIQ-TPPFVGAAA 248
Query: 277 EAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSP 336
A + P PA + PP P PP P P +P P
Sbjct: 249 PPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG--------HPAGPPTAAPAVPPP 300
Query: 337 LTAPRGGLTLNEPLSPLYPAAADSPGGEDGR 367
A GG + +P AA P G G+
Sbjct: 301 AAAQNGG---SAGAAPAPAPAAGGPAGVSGQ 328
Score = 50.8 bits (120), Expect = 2e-06
Identities = 87/316 (27%), Positives = 104/316 (32%), Gaps = 51/316 (16%)
Query: 109 GAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAAL 168
GAA GP +P+ P AAP P G P+R + L A
Sbjct: 69 GAAGAGPAAPAEG-----APGAAPEPPPAGRARPGGGGPQR-PGPPSPRRPLVPAGPAPP 122
Query: 169 FDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLP 228
LR P G+ AG PAA AG A A PAG A+ AR P
Sbjct: 123 AAKLRPPPEGS--AGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAAL-AARAGP------- 172
Query: 229 PSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLD 288
P G G GP GP G A+ + L + A A L+ P
Sbjct: 173 -----GPGPGPGPGPGP-GPGKPAG--PGAAQTLNGSAALLNSHHAAAPAVSLVNNGP-- 222
Query: 289 VFPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWS-VPGCSPTKKSPLTAPRGGLTLN 347
A++L P PG P VG P P + P +P +P AP
Sbjct: 223 -----AALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAP------- 270
Query: 348 EPLSPLYPAAADSPGGEDGRGHLASFAPFFPDCALPPPPPPHQVSYDYSAGYSRTAYSSL 407
P P PA P G P P A P PPP SAG + +
Sbjct: 271 -PPPPPAPATLARPPGH----------PAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAA 319
Query: 408 WRSDGVWEGAPGEEGA 423
GV G PG A
Sbjct: 320 GGPAGV-SGQPGPGAA 334
Score = 47.4 bits (111), Expect = 3e-05
Identities = 78/278 (28%), Positives = 94/278 (33%), Gaps = 66/278 (23%)
Query: 138 AAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAG 197
+A H APR +AAAA +L + ++ P GA AG AAPA G GA
Sbjct: 36 SAAHHHHLAPRTPEVRAAAAGALGNHVVSGS-------PAGA--AGAGPAAPAEGAPGAA 86
Query: 198 T----------GGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSRAGGGG-CGP- 245
GG G GP P R+ + A PP+ P G G C P
Sbjct: 87 PEPPPAGRARPGGGGPQRPGP------PSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPV 140
Query: 246 -------SGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAG---AS 295
+GP+ + K A GP G G P PAG A
Sbjct: 141 PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPG----PGPGPGKPAGPGAAQ 196
Query: 296 VLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRG-GLTLNEP----- 349
L G L PAV S+ P PL P G + P
Sbjct: 197 TLNGSAALLNSHHAAAPAV----------SLVNNGPAALLPLPKPAAPGTVIQTPPFVGA 246
Query: 350 LSPLYPAAADSPGGEDGRGHLASFAPFFPDCALPPPPP 387
+P PAA P A+ AP P A PPPPP
Sbjct: 247 AAPPAPAAPSPP---------AAPAPAAPAAAPPPPPP 275
Score = 44.7 bits (104), Expect = 2e-04
Identities = 39/108 (36%), Positives = 42/108 (38%), Gaps = 18/108 (16%)
Query: 110 AAPPGP--PSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAA 167
AAPP P PSP AA PA P AAP P APA P A AA ++
Sbjct: 247 AAPPAPAAPSPPAAPAPA-APAAAPPPPP-PAPATLARPPGHPAGPPTAAPAVPP----- 299
Query: 168 LFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIP 215
P A+ G AAPA G G G GP A A P
Sbjct: 300 --------PAAAQNGGSAGAAPAPAPAAGGPAGVSGQ-PGPGAAAAAP 338
Score = 39.7 bits (91), Expect = 0.005
Identities = 37/109 (33%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 110 AAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALF 169
AAP P +P+ A A P P+ T+A P A P A A+ Q+ A
Sbjct: 253 AAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSA--- 309
Query: 170 DSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGAR 218
GA PA APAAG G AG G G G A A PG +
Sbjct: 310 --------GAAPA----PAPAAG-GPAGVSGQPG--PGAAAAAPAPGVK 343
Score = 37.7 bits (86), Expect = 0.020
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 112 PPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDS 171
P GPP+ + A P SA APA P + Q A+ + + +S
Sbjct: 287 PAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAES 346
Query: 172 LRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLP 228
+ V A PA +AA G A T A V GP A+P VP A P
Sbjct: 347 PKRVVQAAPPAAQTLAAS----GPAST--AASMVIGPTMQGALPSPAAVPPPAPGTP 397
>gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens]
Length = 1047
Score = 51.6 bits (122), Expect = 1e-06
Identities = 60/179 (33%), Positives = 75/179 (41%), Gaps = 19/179 (10%)
Query: 109 GAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAAL 168
GA G + S+A PA + P+A VAA + A A+L S L A
Sbjct: 17 GAGGGGAAAGSSA-YPAVCRVKIPAALPVAAAPYPGLVETGVAGTLGGGAALGSEFLGA- 74
Query: 169 FDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLP 228
S+ GGA GG AAG+ GA G AG VAGP+G A+ LP
Sbjct: 75 -GSVAGALGGAGLTGG---GTAAGVAGAAAGVAGAAVAGPSGDMAL----------TKLP 120
Query: 229 PSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELL-GPDYGAGTEAAVLLAAEP 286
S E + GGG P P L L G V+ + L GP+Y E A+ L A P
Sbjct: 121 TSLLAE-TLGPGGGFPPLPPPPYLPPLGAGLGTVDEGDSLDGPEY-EEEEVAIPLTAPP 177
Score = 35.0 bits (79), Expect = 0.13
Identities = 50/164 (30%), Positives = 64/164 (39%), Gaps = 15/164 (9%)
Query: 179 AEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSRA 238
A AG E P GAG GGA AG++A P +V + A LP + P
Sbjct: 3 AAEAGSEEGGPVT--AGAGGGGAA------AGSSAYPAVCRVKIPAA-LPVAAAPYPGLV 53
Query: 239 GGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLR 298
G G G +LG GA +V G GT A V AA + AGA+V
Sbjct: 54 ETGVAGTLGGGAALGSEFLGAGSVAGALGGAGLTGGGTAAGVAGAAAGV----AGAAV-- 107
Query: 299 GPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRG 342
P + L + P +++ L P P P PL A G
Sbjct: 108 AGPSGDMALTKLPTSLLAETLGPGGGFPPLPPPPYLPPLGAGLG 151
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 51.2 bits (121), Expect = 2e-06
Identities = 63/217 (29%), Positives = 84/217 (38%), Gaps = 31/217 (14%)
Query: 100 QIKRCSGLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKA-----APRREASQA 154
Q+ SG + + PP A +P KRP A +AP VAA A A AP A+
Sbjct: 428 QLPSSSGKISSGNSFPPQQ--AGSPLKRPFPA-AAPAVAAAAPAPAPAPAAAPALAAAAV 484
Query: 155 AAAA-----SLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPA 209
AAAA S + L + R P P APA + TG +V GP
Sbjct: 485 AAAAGGAAPSHSQKPSVPLIKASRRRPAAGRPTRFVKIAPAIQVRTGSTGLKATNVEGPV 544
Query: 210 GATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSG---PDVSLGDLEKGAEAVEFFE 266
+ G P++A P S P+ G G SG PD G ++ + A F
Sbjct: 545 RGAQVLGCSFKPVQA---PGSGAPAPAGISGSGLQSSGGPLPDARPGAVQASSPAPLQFF 601
Query: 267 LLGPDYGAGTEAAVLLAAEPLDV-FPAGASVLRGPPE 302
L P+ PL + P G +VL GP +
Sbjct: 602 LNTPE-----------GLRPLTLQVPQGWAVLTGPQQ 627
>gi|210032463 family with sequence similarity 48, member B2 [Homo
sapiens]
Length = 817
Score = 51.2 bits (121), Expect = 2e-06
Identities = 63/217 (29%), Positives = 84/217 (38%), Gaps = 31/217 (14%)
Query: 100 QIKRCSGLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKA-----APRREASQA 154
Q+ SG + + PP A +P KRP A +AP VAA A A AP A+
Sbjct: 466 QLPSSSGKISSGNSFPPQQ--AGSPLKRPFPA-AAPAVAAAAPAPAPAPAAAPALAAAAV 522
Query: 155 AAAA-----SLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPA 209
AAAA S + L + R P P APA + TG +V GP
Sbjct: 523 AAAAGGAAPSHSQKPSVPLIKASRRRPAAGRPTRFVKIAPAIQVRTGSTGLKATNVEGPV 582
Query: 210 GATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSG---PDVSLGDLEKGAEAVEFFE 266
+ G P++A P S P+ G G SG PD G ++ + A F
Sbjct: 583 RGAQVLGCSFKPVQA---PGSGAPAPAGISGSGLQSSGGPLPDARPGAVQASSPAPLQFF 639
Query: 267 LLGPDYGAGTEAAVLLAAEPLDV-FPAGASVLRGPPE 302
L P+ PL + P G +VL GP +
Sbjct: 640 LNTPE-----------GLRPLTLQVPQGWAVLTGPQQ 665
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 50.8 bits (120), Expect = 2e-06
Identities = 97/338 (28%), Positives = 117/338 (34%), Gaps = 74/338 (21%)
Query: 107 LMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPR----REASQAAAAASLQS 162
L+GA PP PP P P A AP PR ++ Q AA + S
Sbjct: 281 LLGAPPPPPPPPP------------PLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAAS 328
Query: 163 RSLAALFDSLRHVPGGAEPAGGEVAAP-AAGLG-GAGTG-GAGGDVAGPAGATAIP---- 215
S AA S+ GGA GG AG+G GAG G GAG GP IP
Sbjct: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSK 388
Query: 216 ----GARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPD 271
G + L P +T P+ A + K +A E LG
Sbjct: 389 GSFGGVLQKFPGCGGLFPHPYTFPAAA-----------AAFSLCHKKEDAGAAAEALG-- 435
Query: 272 YGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEP-----PPAVVGNLLYPEPWSV 326
GAG A A P AG S L P + + P PP G L P
Sbjct: 436 -GAGAGGA---GAAP----KAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQP 487
Query: 327 PGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAAD--SPGGEDGRGHLASFAPFFPDCALPP 384
P P S L G L E + L A D PGG G + A PP
Sbjct: 488 P---PQPPSAL-----GCALGESPALLRQAFLDLAEPGGAAGSA----------EAAPPP 529
Query: 385 PPPPHQVSYDYSAGYSRTAYSSLWRSDGVWEGAPGEEG 422
PP V+ +G A + R D ++E PG G
Sbjct: 530 GQPPQVVANGPGSGPPPPAGGAGSR-DALFESPPGGSG 566
Score = 31.6 bits (70), Expect = 1.4
Identities = 29/98 (29%), Positives = 33/98 (33%), Gaps = 16/98 (16%)
Query: 116 PSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHV 175
P +A A P P P G P A S ALF+S
Sbjct: 516 PGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAG-----------SRDALFESPPGG 564
Query: 176 PGG-----AEPAGGEVAAPAAGLGGAGTGGAGGDVAGP 208
GG + P VAA AG AG+G AG V P
Sbjct: 565 SGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAP 602
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 50.8 bits (120), Expect = 2e-06
Identities = 97/338 (28%), Positives = 117/338 (34%), Gaps = 74/338 (21%)
Query: 107 LMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPR----REASQAAAAASLQS 162
L+GA PP PP P P A AP PR ++ Q AA + S
Sbjct: 281 LLGAPPPPPPPPP------------PLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAAS 328
Query: 163 RSLAALFDSLRHVPGGAEPAGGEVAAP-AAGLG-GAGTG-GAGGDVAGPAGATAIP---- 215
S AA S+ GGA GG AG+G GAG G GAG GP IP
Sbjct: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSK 388
Query: 216 ----GARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPD 271
G + L P +T P+ A + K +A E LG
Sbjct: 389 GSFGGVLQKFPGCGGLFPHPYTFPAAA-----------AAFSLCHKKEDAGAAAEALG-- 435
Query: 272 YGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEP-----PPAVVGNLLYPEPWSV 326
GAG A A P AG S L P + + P PP G L P
Sbjct: 436 -GAGAGGA---GAAP----KAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQP 487
Query: 327 PGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAAD--SPGGEDGRGHLASFAPFFPDCALPP 384
P P S L G L E + L A D PGG G + A PP
Sbjct: 488 P---PQPPSAL-----GCALGESPALLRQAFLDLAEPGGAAGSA----------EAAPPP 529
Query: 385 PPPPHQVSYDYSAGYSRTAYSSLWRSDGVWEGAPGEEG 422
PP V+ +G A + R D ++E PG G
Sbjct: 530 GQPPQVVANGPGSGPPPPAGGAGSR-DALFESPPGGSG 566
Score = 31.6 bits (70), Expect = 1.4
Identities = 29/98 (29%), Positives = 33/98 (33%), Gaps = 16/98 (16%)
Query: 116 PSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHV 175
P +A A P P P G P A S ALF+S
Sbjct: 516 PGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAG-----------SRDALFESPPGG 564
Query: 176 PGG-----AEPAGGEVAAPAAGLGGAGTGGAGGDVAGP 208
GG + P VAA AG AG+G AG V P
Sbjct: 565 SGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAP 602
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 50.8 bits (120), Expect = 2e-06
Identities = 97/338 (28%), Positives = 117/338 (34%), Gaps = 74/338 (21%)
Query: 107 LMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPR----REASQAAAAASLQS 162
L+GA PP PP P P A AP PR ++ Q AA + S
Sbjct: 281 LLGAPPPPPPPPP------------PLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAAS 328
Query: 163 RSLAALFDSLRHVPGGAEPAGGEVAAP-AAGLG-GAGTG-GAGGDVAGPAGATAIP---- 215
S AA S+ GGA GG AG+G GAG G GAG GP IP
Sbjct: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSK 388
Query: 216 ----GARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPD 271
G + L P +T P+ A + K +A E LG
Sbjct: 389 GSFGGVLQKFPGCGGLFPHPYTFPAAA-----------AAFSLCHKKEDAGAAAEALG-- 435
Query: 272 YGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEP-----PPAVVGNLLYPEPWSV 326
GAG A A P AG S L P + + P PP G L P
Sbjct: 436 -GAGAGGA---GAAP----KAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQP 487
Query: 327 PGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAAD--SPGGEDGRGHLASFAPFFPDCALPP 384
P P S L G L E + L A D PGG G + A PP
Sbjct: 488 P---PQPPSAL-----GCALGESPALLRQAFLDLAEPGGAAGSA----------EAAPPP 529
Query: 385 PPPPHQVSYDYSAGYSRTAYSSLWRSDGVWEGAPGEEG 422
PP V+ +G A + R D ++E PG G
Sbjct: 530 GQPPQVVANGPGSGPPPPAGGAGSR-DALFESPPGGSG 566
Score = 31.6 bits (70), Expect = 1.4
Identities = 29/98 (29%), Positives = 33/98 (33%), Gaps = 16/98 (16%)
Query: 116 PSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHV 175
P +A A P P P G P A S ALF+S
Sbjct: 516 PGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAG-----------SRDALFESPPGG 564
Query: 176 PGG-----AEPAGGEVAAPAAGLGGAGTGGAGGDVAGP 208
GG + P VAA AG AG+G AG V P
Sbjct: 565 SGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAP 602
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 50.8 bits (120), Expect = 2e-06
Identities = 58/200 (29%), Positives = 77/200 (38%), Gaps = 19/200 (9%)
Query: 110 AAPPGPPSPSAADTPAKRPLAAPS----APTVAAPAHGKAAPRREASQAAAAASLQSRSL 165
AA P+ +AA PA AAP+ A APA A A+ A+AA S +
Sbjct: 514 AAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKPS 573
Query: 166 AALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRAR 225
L + R P P APA L TG +V GP G+ P++A
Sbjct: 574 VPLIQASRPCPAAQPPTKFIKIAPAIQLRTGSTGLKAINVEGPVQGAQALGSSFKPVQA- 632
Query: 226 NLPPSFFTEPSRAGGGGCGPSG---PDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLL 282
P S P+ G SG PD G ++ + A F L P+ G LL
Sbjct: 633 --PGSGAPAPAGISGSDLQSSGGPLPDARPGAVQASSPAPLQFFLNTPE---GLRPLTLL 687
Query: 283 AAEPLDVFPAGASVLRGPPE 302
P G++VL GP +
Sbjct: 688 QV------PQGSAVLTGPQQ 701
Score = 42.0 bits (97), Expect = 0.001
Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 11/185 (5%)
Query: 100 QIKRCSGLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAAS 159
Q+ SG + + PP A +P KRP +A +A +AA A AA A+ AA A +
Sbjct: 466 QLPSSSGKISSGNSFPPQQ--AGSPLKRPFSAAAA--IAAAAAAAAAAAAAAAAAAPAPA 521
Query: 160 LQSRSLAALFDSLR-HVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGAR 218
L + + AL + + A PA AAPA A A + I +R
Sbjct: 522 LAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKPSVPLIQASR 581
Query: 219 KVPLRARNLPPSFFTEPSRAGGGGCGPSG-PDVSLGDLEKGAEAV--EFFELLGPDYGAG 275
P PP+ F + + A G +G +++ +GA+A+ F + P GA
Sbjct: 582 PCPAAQ---PPTKFIKIAPAIQLRTGSTGLKAINVEGPVQGAQALGSSFKPVQAPGSGAP 638
Query: 276 TEAAV 280
A +
Sbjct: 639 APAGI 643
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 50.8 bits (120), Expect = 2e-06
Identities = 80/301 (26%), Positives = 99/301 (32%), Gaps = 56/301 (18%)
Query: 113 PGPPSPSAADTP-AKRPLA------------APSAPTVAAPAHGKAAPRREASQAAAAAS 159
P PPSP A TP A PL+ PS + P G A P + + A + S
Sbjct: 856 PTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTS 915
Query: 160 LQSRSLAALFDSLRHVPGGAEPAGG---EVAAPAAGLGGAGTGGAGGDVAGPAGATAIP- 215
S A + + +P P G A P + GG T PA P
Sbjct: 916 -SSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPK 974
Query: 216 GARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAG 275
G P P T PS G GP+ P KGA + P G
Sbjct: 975 GGPATPSPKGAPTPPAATPPSPKG----GPATPS------PKGAPTP---PAVTPPSPKG 1021
Query: 276 TEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKS 335
+ AA FP GAS PP P + PA P P G T +
Sbjct: 1022 SPAAT--------PFPKGAST---PPAATPPSPKGSPAAT-----PLP---KGAPTTPAA 1062
Query: 336 PLTAPRGGLTLNEPLSPLYPAAADSPGGEDGRGHLASFAPFFPDCALPPPP------PPH 389
L +P+GG P AA P + G + P A PP P PPH
Sbjct: 1063 TLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPH 1122
Query: 390 Q 390
+
Sbjct: 1123 K 1123
Score = 50.4 bits (119), Expect = 3e-06
Identities = 82/315 (26%), Positives = 99/315 (31%), Gaps = 46/315 (14%)
Query: 111 APPGPPSPSAADTPAKR-------PLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSR 163
+P G P+P AA P+ + P AP+ P V P+ K +P A S
Sbjct: 981 SPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPS-PKGSPAATPFPKGA-----ST 1034
Query: 164 SLAALFDSLRHVPGGAEPAGGEVAAPAAGL----GGAGTGGAGGDVAGPA-------GAT 212
AA S + P G PAA L GG T G PA G
Sbjct: 1035 PPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGP 1094
Query: 213 AIPGARKVPLRARNLPPS---FFTEPSRAGGGGCGPSGPDVSLGDL----EKGAEAVEFF 265
A P + P+ PPS P G + P G L KGA
Sbjct: 1095 ATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAA 1154
Query: 266 ELLGPDYGAGTE----AAVLLAAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYP 321
P G T A AA P P G P PP+ G L P
Sbjct: 1155 TPPSPKGGLATPPPKGAPTTPAATPPS--PKGGLATPSPKGAPTTPAATPPSPKGGLATP 1212
Query: 322 EPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADSPGGEDGRGHLASFAPFFPDCA 381
P P +P P +P+GGL P AA P + G P A
Sbjct: 1213 SPKGAP-TTPAATPP--SPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAA 1269
Query: 382 LPP------PPPPHQ 390
PP PPH+
Sbjct: 1270 TPPSLKGGLATPPHK 1284
Score = 47.8 bits (112), Expect = 2e-05
Identities = 76/287 (26%), Positives = 93/287 (32%), Gaps = 32/287 (11%)
Query: 110 AAPPGPPSPSAADTPAKRPL--AAPSAP--TVAAPAHGKAAPRREASQAAAAASLQSRSL 165
+ PP PS +PA PL AP+ P T+ +P G A P + + AA+ S
Sbjct: 1033 STPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKG 1092
Query: 166 AALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIP--GARKVPLR 223
S + P PA A P + GG T G PA P G P +
Sbjct: 1093 GPATPSPKGAP--MPPA----ATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPK 1146
Query: 224 ARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTE----AA 279
P+ T PS GG P KGA P G T A
Sbjct: 1147 GAPTTPA-ATPPSPKGGLATPP----------PKGAPTTPAATPPSPKGGLATPSPKGAP 1195
Query: 280 VLLAAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSPLTA 339
AA P P G P PP+ G L P P P +P P +
Sbjct: 1196 TTPAATPPS--PKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAP-TTPAATPP--S 1250
Query: 340 PRGGLTLNEPLSPLYPAAADSPGGEDGRGHLASFAPFFPDCALPPPP 386
P+GG P P AA P + G P PP P
Sbjct: 1251 PKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSP 1297
Score = 47.0 bits (110), Expect = 3e-05
Identities = 75/291 (25%), Positives = 97/291 (33%), Gaps = 35/291 (12%)
Query: 111 APPGPPSPSAAD---------TPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQ 161
+P G P+P AA TP+ + P A T +P G A P + + AA+
Sbjct: 935 SPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPP 994
Query: 162 SRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGT----GGAGGDVAGPAGATAIPGA 217
S S P GA P V P+ A T G + A P P A
Sbjct: 995 SPKGGPATPS----PKGA-PTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAA 1049
Query: 218 RKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTE 277
+P A P + T PS G GP+ P + KGA P G T
Sbjct: 1050 TPLPKGAPTTPAA--TLPSPKG----GPATPSL------KGAPTPPAATPPSPKGGPATP 1097
Query: 278 AAVLLAAEPLDVFPAGASVLRGPPE--LEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKS 335
+ P P+ L PP PP+ G L P P P +P
Sbjct: 1098 SPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAP-TTPAATP 1156
Query: 336 PLTAPRGGLTLNEPLSPLYPAAADSPGGEDGRGHLASFAPFFPDCALPPPP 386
P +P+GGL P AA P + G + A PP P
Sbjct: 1157 P--SPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP 1205
Score = 40.8 bits (94), Expect = 0.002
Identities = 83/308 (26%), Positives = 102/308 (33%), Gaps = 54/308 (17%)
Query: 109 GAAPPGP---PSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREAS--------QAAAA 157
G A P P P+ S + K+ A P+ + A K AP A+ A +
Sbjct: 899 GPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPS 958
Query: 158 ASLQSRSLAALFDSLRHVPGGAEPAGG---EVAAPAAGLGGAGTGGAGGDVAGPA----G 210
AA S + P P G A P + GG T G PA
Sbjct: 959 PKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPS 1018
Query: 211 ATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGP 270
P A P + + PP+ T PS G P L KGA L P
Sbjct: 1019 PKGSPAATPFP-KGASTPPA-ATPPSPKGSPAATP---------LPKGAPTTPAATLPSP 1067
Query: 271 DYGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCS 330
G T + L P S GP P PPA P P
Sbjct: 1068 KGGPATPS---LKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATP----PSPKGGLATP 1120
Query: 331 PTKKSPLT------APRGGLTLNEPL-SPLYPAAA-DSPGGEDGRGHLAS----FAPFFP 378
P K +P T +P+GGL P +P PAA SP +G LA+ AP P
Sbjct: 1121 PHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSP-----KGGLATPPPKGAPTTP 1175
Query: 379 DCALPPPP 386
A PP P
Sbjct: 1176 -AATPPSP 1182
Score = 36.2 bits (82), Expect = 0.058
Identities = 71/309 (22%), Positives = 106/309 (34%), Gaps = 31/309 (10%)
Query: 113 PGPPSPSAADTPAKRPLAAPSAPTVAAP--AHGKAAPRREASQAAAAASLQSRSLAALFD 170
P P P A P + + S + AP + K P ++ +A A+S +L L D
Sbjct: 735 PSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASS--KGTLTYLAD 792
Query: 171 SLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAG---ATAIP-------GARKV 220
S + P + P G AG G+++ P A+ +P G++
Sbjct: 793 SPSPLGVSVSP---QTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDS 849
Query: 221 PLRARN-LPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEF--FELLGPDYGAGTE 277
P + PPS P+ + P G V+L E +V F GP A +
Sbjct: 850 PATTHSPTPPSPKGAPTPSAVTPLSPKG--VTLPPKETPTPSVVNLPFPKEGPATPAPKQ 907
Query: 278 AAVL--LAAEPLDV----FPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSP 331
A L ++ P P G P PP+ G P P P +P
Sbjct: 908 APALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAP--TP 965
Query: 332 TKKSPLTAPRGGLTLNEPLSPLYPAAADSPGGEDGRGHLASFAPFFPDCALPPPPPPHQV 391
+P +P+GG P P AA P + G + P PP P
Sbjct: 966 PAATP-PSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPA 1024
Query: 392 SYDYSAGYS 400
+ + G S
Sbjct: 1025 ATPFPKGAS 1033
Score = 33.1 bits (74), Expect = 0.49
Identities = 59/245 (24%), Positives = 81/245 (33%), Gaps = 55/245 (22%)
Query: 112 PPGPPSPSAADTPAKR-------PLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRS 164
P G P+P AA P+ + P AP+ P V P+ K P A+ ++ + S
Sbjct: 1306 PKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPS-PKGTPTLPATTPSSKGGPTTPS 1364
Query: 165 LAALFDSLRHVPGGAEPA--GGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPL 222
P A P+ GG P + G GD PA +PL
Sbjct: 1365 -----SKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPA---------VIPL 1410
Query: 223 RARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLL 282
+ P + T A + P V+ L+K P G T ++
Sbjct: 1411 SPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPAT------SAPKGGPATPSS--- 1461
Query: 283 AAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSPLT-APR 341
+G P L P + P P P P V S KK+P T AP
Sbjct: 1462 ---------------KGDPTL-PAVTPPSPKEP-----PAPKQVATSSSPKKAPATPAPM 1500
Query: 342 GGLTL 346
G TL
Sbjct: 1501 GAPTL 1505
Score = 32.0 bits (71), Expect = 1.1
Identities = 70/285 (24%), Positives = 95/285 (33%), Gaps = 58/285 (20%)
Query: 112 PPG--PPSPSA-----ADTPAKR--------------PLAAPS-----APTVAAPAHGKA 145
PP PPSP A TP+ + P A PS A T +P G A
Sbjct: 1335 PPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPA 1394
Query: 146 APRREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDV 205
P + + A S A R G A P+ G++ PA A
Sbjct: 1395 IPSPKGDPTSPAVIPLSPKKAPATPVTRE--GAATPSKGDLTPPAVTPVSLKKAPA---T 1449
Query: 206 AGPAGATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFF 265
+ P G A P ++ P PPS EP P+ V+ K A A
Sbjct: 1450 SAPKGGPATPSSKGDPTLPAVTPPS-PKEP---------PAPKQVATSSSPKKAPATP-- 1497
Query: 266 ELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGP--------PELEPGLFEPPPAVV-G 316
GA T AV + + P +V PA S R P + P P A++
Sbjct: 1498 ----APMGAPTLPAV-IPSSPKEV-PATPSSRRDPIAPTATLLSKKTPATLAPKEALIPP 1551
Query: 317 NLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADSP 361
+ P P P K++P T + ++P A SP
Sbjct: 1552 AMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSP 1596
Score = 30.4 bits (67), Expect = 3.2
Identities = 66/274 (24%), Positives = 89/274 (32%), Gaps = 40/274 (14%)
Query: 113 PGPPSPSAADT-PAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDS 171
P PSP T PA PL+ AP G A P + A + S
Sbjct: 1393 PAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPV----------S 1442
Query: 172 LRHVPGGAEPAG--------GEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLR 223
L+ P + P G G+ PA A VA + P A P+
Sbjct: 1443 LKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAP-ATPAPMG 1501
Query: 224 ARNLP---PSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAV 280
A LP PS E P P +L + A L+ P +
Sbjct: 1502 APTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKT 1561
Query: 281 LLAAEPLDVFPA--GASVLRGPPELEPGLFEP---------PPAVV--GNLLYPEPWSVP 327
P + PA + PP + P ++ PPAV P P +V
Sbjct: 1562 PAIPTPKEA-PATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVT 1620
Query: 328 GCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADSP 361
SP K AP+G T + P++P + DSP
Sbjct: 1621 PPSPEKGPATPAPKGTPT-SPPVTP--SSLKDSP 1651
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 50.1 bits (118), Expect = 4e-06
Identities = 95/369 (25%), Positives = 123/369 (33%), Gaps = 85/369 (23%)
Query: 42 ETGAPAGALLSGAEGGDVREATRDLLSFIDSASSNIKLALDKP-----GKSKRKVNHRKY 96
E GA A GG E ++ S +D A + L + + + H++Y
Sbjct: 645 EEGAGGAATPEDGAGGRGSEGSQSPGSSVDDAEDDPSRTLCEACNIRFSRHETYTVHKRY 704
Query: 97 LQKQIKRCSGLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAA 156
AAPPGPP P AAP AP+ AAP + RR+ + A
Sbjct: 705 YCASRHDPPPRRPAAPPGPPGP-----------AAPPAPSPAAPV--RTRRRRKLYELHA 751
Query: 157 AASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPG 216
A + P G AP + G+G+G +GP A A
Sbjct: 752 AGA------------------PPPPPPGHAPAPESPRPGSGSG------SGPGLAPA--- 784
Query: 217 ARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPD--------VSLGDLEKGAEAVEFFELL 268
+ P A + P +P R G P+ D VS LE ++
Sbjct: 785 --RSPGPAADGPIDLSKKPRRPLPGAPAPALADYHECTACRVSFHSLEAYLAHKKYSCPA 842
Query: 269 GPDYGA-GTEAAVLLAAEP--------LDVFPAGASVLRGPPELEPGLFEPPPAVVGNLL 319
P GA G AA P L+ F +L G P PG+ PA G
Sbjct: 843 APPPGALGLPAAACPYCPPNGPVRGDLLEHFRLAHGLLLGAPLAGPGVEARTPADRG--- 899
Query: 320 YPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADSPGGEDGRGHLASFAPFFPD 379
P P P SP S PR GL EP P P SP P+
Sbjct: 900 -PSPAPAPAASPQPGS--RGPRDGLG-PEPQEP-PPGPPPSPAAA-------------PE 941
Query: 380 CALPPPPPP 388
PPP PP
Sbjct: 942 AVPPPPAPP 950
Score = 28.9 bits (63), Expect = 9.3
Identities = 32/116 (27%), Positives = 43/116 (37%), Gaps = 22/116 (18%)
Query: 107 LMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLA 166
++G PGP +PS +P + P A +++P G + E A
Sbjct: 475 ILGPGEPGPQAPSRTPSP-RSPAPARVKAELSSPTPGSSPVPGELGLA-----------G 522
Query: 167 ALFDSLRHVPGGAEPAGGEVAAPAAGL--------GGAGTGGA--GGDVAGPAGAT 212
ALF A P E+ A + L GAG GGA G P GAT
Sbjct: 523 ALFLPQYVFGPDAAPPASEILAKMSELVHSRLQQGAGAGAGGAQTGLFPGAPKGAT 578
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 49.3 bits (116), Expect = 7e-06
Identities = 56/195 (28%), Positives = 74/195 (37%), Gaps = 30/195 (15%)
Query: 124 PAKRPLAAPSAPTVAAPAH------GKAAPRREASQAAAAASLQSRSLAALFDSLRHVPG 177
P P ++PS PA+ G PR E Q A ++ L + PG
Sbjct: 419 PYYDPTSSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGML------IEGPPG 472
Query: 178 GAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSR 237
PAG + P +G G G G+ GP G +PGA +P P + P R
Sbjct: 473 PEGPAG--LPGPPGTMGPTGQVGDPGE-RGPPGRPGLPGADGLP----GPPGTMLMLPFR 525
Query: 238 AGGGG-CGPSGPDVSLGDLEKGAEAVEF----------FELLGPDYGAGTEAAVLLAAEP 286
GGGG G GP VS + + A + L G G + L EP
Sbjct: 526 FGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEP 585
Query: 287 LDVFPAGASVLRGPP 301
DV P G ++GPP
Sbjct: 586 GDVGPQGPRGVQGPP 600
Score = 45.4 bits (106), Expect = 1e-04
Identities = 94/365 (25%), Positives = 115/365 (31%), Gaps = 61/365 (16%)
Query: 106 GLMG-AAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRS 164
GL G PPGPP P A +P +R A + P G P A + A +
Sbjct: 1072 GLKGNEGPPGPPGP--AGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQG 1129
Query: 165 LAALFDSLR---HVPGGAEPAG--------GEVAAPA--AGLGGAGTGGAGGDVA----- 206
A D L+ +PG A P G GE+ P G G G G
Sbjct: 1130 PAGR-DGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPI 1188
Query: 207 ---GPAGATAIPGAR--------------------KVPLRARNLPPSFFTEPSRAGGGGC 243
GP+GA PG R P+ + LP + G
Sbjct: 1189 GQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQM 1248
Query: 244 GPSGPDVSLGDL-EKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPE 302
GP GP G GA+ + GP G G AV EP + G GPP
Sbjct: 1249 GPPGPPGPRGPSGAPGADGPQ-----GPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPG 1303
Query: 303 LEPGLFEP----PPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAA 358
+ E P G P P PG K SP P G P PA
Sbjct: 1304 PKGERGEKGESGPSGAAGP---PGPKGPPGDDGPKGSP--GPVGFPGDPGPPGEPGPAGQ 1358
Query: 359 DSPGGEDG-RGHLASFAPFFPDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSDGVWEGA 417
D P G+ G G P P PP + AG + + EG
Sbjct: 1359 DGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGP 1418
Query: 418 PGEEG 422
PG+ G
Sbjct: 1419 PGKTG 1423
Score = 39.7 bits (91), Expect = 0.005
Identities = 93/377 (24%), Positives = 116/377 (30%), Gaps = 89/377 (23%)
Query: 106 GLMGAAPPGPPSPSAAD------------------TPAKRP-------LAAPSAPTVAAP 140
G++ PPGP P+ P RP L P + P
Sbjct: 464 GMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLP 523
Query: 141 AH-------GKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAG-----GEVAA 188
G P A ++ A A LQ LA + G A P G G V
Sbjct: 524 FRFGGGGDAGSKGPMVSAQESQAQAILQQARLA--------LRGPAGPMGLTGRPGPVGP 575
Query: 189 PAAGLGGAGTGGAGGDVA--GPAGATAIPGARKVPLR--------ARNLPPSFFTEPSRA 238
P +G G G GDV GP G PG P R AR +P + R
Sbjct: 576 PGSG----GLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRG 631
Query: 239 GGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLR 298
G G G GD G D G + V P + P G +
Sbjct: 632 FDGLAGLPGEKGHRGDPGPSGPPGP----PGDDGERGDDGEVGPRGLPGEPGPRGLLGPK 687
Query: 299 GPPELEPGLFEPPPAVVGNLLYP------EPWSVPGCSPTKKSP----LTAPRGGLTLNE 348
GPP PG PP V G P P PG + +P L P+G +
Sbjct: 688 GPPG-PPG----PPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPG 742
Query: 349 PLSPL-YPAAADSPGGEDGRGHLASFAPFFPDCALPPPPPPHQVSYDYSAGYSRTAYSSL 407
PL P PG + GH P PP P + Y G
Sbjct: 743 EKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVK------- 795
Query: 408 WRSDGV--WEGAPGEEG 422
+DG+ +G GE+G
Sbjct: 796 -GADGIRGLKGTKGEKG 811
Score = 37.4 bits (85), Expect = 0.026
Identities = 70/237 (29%), Positives = 78/237 (32%), Gaps = 41/237 (17%)
Query: 105 SGLMGAA-PPGPPSPSAADTPAKRP-----LAAPSAPTVAAPAHGKAAPRREASQAAAAA 158
SG GAA PPGP P D P P P P PA P +
Sbjct: 1314 SGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQ 1373
Query: 159 SLQSRSLAALFDS----LRHVPGGAEPAG--GEVAA--------PAAGLGGAGTGGAGGD 204
+ S R PG A P G GE A P G G GA G
Sbjct: 1374 TGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGK 1433
Query: 205 VAGPAGATAIPGARKVPLRARNLPPSFFTEPSRAG-GGGCGPSGPDVSLGDL----EKGA 259
GP G IPG P+ + LP S P G G GP G GD EKG
Sbjct: 1434 -PGPDGLRGIPG----PVGEQGLPGS----PGPDGPPGPMGPPGLPGLKGDSGPKGEKGH 1484
Query: 260 EAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGP-----PELEPGLFEPP 311
+ L+GP G + L P G + GP P PGL PP
Sbjct: 1485 PGL--IGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPP 1539
Score = 36.2 bits (82), Expect = 0.058
Identities = 95/401 (23%), Positives = 124/401 (30%), Gaps = 68/401 (16%)
Query: 12 PFVPFGFGGSPDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEGGDVREATRDLLSFID 71
P P G G P +G D G E G P L GA+G T +L F
Sbjct: 473 PEGPAGLPGPPGTMGPTGQVGDPG------ERGPPGRPGLPGADGLPGPPGTMLMLPFRF 526
Query: 72 SASSNIKLALDKPGKSKRKVNHRKYLQKQ---IKRCSGLMG-AAPPGPPSPSAADTPAKR 127
+ P S ++ + LQ+ ++ +G MG PGP P +
Sbjct: 527 GGGGDA--GSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGE 584
Query: 128 PLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGEVA 187
P P G P + + A S D R +PG P G
Sbjct: 585 P--GDVGPQGPRGVQGPPGPAGKPGRRGRAGS----------DGARGMPGQTGPKGDRGF 632
Query: 188 APAAGL----------GGAGTGGAGGD--------VAGPAGATAIPGARKVPLRARNLPP 229
AGL G +G G GD GP G PG R L PP
Sbjct: 633 DGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPR--GLLGPKGPP 690
Query: 230 SFFTEPSRAG-------GGGCGPSGPDVSLGDL-EKGAEAVEFFE-LLGPDYGAGTEAAV 280
P G G GP G G GA+ + + +GP G
Sbjct: 691 GPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKP 750
Query: 281 LLAAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTK------- 333
L P P G GPP + G + PP G + YP P V G +
Sbjct: 751 GLPGMPGADGPPGHPGKEGPPGEKGG--QGPPGPQGPIGYPGPRGVKGADGIRGLKGTKG 808
Query: 334 ---KSPLTAPRGGLTL---NEPLSPLYPAAADSPGGEDGRG 368
+ +G + + + P P D P G GRG
Sbjct: 809 EKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRG 849
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 48.5 bits (114), Expect = 1e-05
Identities = 113/431 (26%), Positives = 140/431 (32%), Gaps = 69/431 (16%)
Query: 10 THPFVPFGFGGSPDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEGGDVREATRDLLSF 69
T P P GF G+P G G ++G E E G P A G G + +
Sbjct: 803 TGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKG- 861
Query: 70 IDSASSNIKLALDKPGKSKRKVNHRKYLQKQIKRCSGLMGA----APPGPPSPSAADTPA 125
+ S A PG GL G PGPP PS + P
Sbjct: 862 -ERGSPGGPGAAGFPG------------------ARGLPGPPGSNGNPGPPGPSGS--PG 900
Query: 126 KRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGE 185
K P+ T A + G + P+ +A Q S ++ PG P G
Sbjct: 901 KDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQG----------PPGAPGPLGIA 950
Query: 186 VAAPAAGLGGA----------GTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFT-- 233
A GL G G G G+ +G GA + G R P + LP T
Sbjct: 951 GITGARGLAGPPGMPGPRGSPGPQGVKGE-SGKPGANGLSGERGPP-GPQGLPGLAGTAG 1008
Query: 234 EPSRAGGGGC-GPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPA 292
EP R G G G G D S G KG G + G A P V PA
Sbjct: 1009 EPGRDGNPGSDGLPGRDGSPGG--KGDR--------GENGSPGAPGAPGHPGPPGPVGPA 1058
Query: 293 GASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLS- 351
G S RG E P P G+ P P P T RG +
Sbjct: 1059 GKSGDRG--ESGPAGPAGAPGPAGSRGAPGPQG-----PRGDKGETGERGAAGIKGHRGF 1111
Query: 352 PLYPAAADSPGGEDGRGHLASFAPFFPDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSD 411
P P A SPG +G + S P P + P PP + G R +
Sbjct: 1112 PGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGE 1171
Query: 412 GVWEGAPGEEG 422
EG+PG G
Sbjct: 1172 RGSEGSPGHPG 1182
Score = 45.8 bits (107), Expect = 7e-05
Identities = 104/362 (28%), Positives = 115/362 (31%), Gaps = 81/362 (22%)
Query: 112 PPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDS 171
P GPP P A K AP P +A P G R E A
Sbjct: 766 PIGPPGP-AGQPGDKGEGGAPGLPGIAGP-RGSPGERGETGPPGPAG------------- 810
Query: 172 LRHVPG-GAEPAG-GEVAAPAA-GLGG----AGTGGAGGDVAGPAGATAIPGARKVP--- 221
PG EP G GE AP G GG AG G G AGP G + G R P
Sbjct: 811 FPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGP-AGPPGPQGVKGERGSPGGP 869
Query: 222 -----LRARNL--PPSFFTEPSRAGGGGC----GPSGPDVSLGDLEKGAEAVEFFELLGP 270
AR L PP P G G GP GP + G G+ V GP
Sbjct: 870 GAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG--APGSPGVS-----GP 922
Query: 271 DYGAGTEA--------AVLLAAEPLDVFP-AGASVLRGPPELEPGLFEPPPAVV------ 315
AG A PL + GA L GPP + P P V
Sbjct: 923 KGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGK 982
Query: 316 -------GNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADSPGGEDGRG 368
G P P +PG + T P R G P S P SPGG+ RG
Sbjct: 983 PGANGLSGERGPPGPQGLPGLAGTAGEP---GRDG----NPGSDGLPGRDGSPGGKGDRG 1035
Query: 369 HLAS----FAPFFPDCALPPPPPPHQVSYDYSAGYSRTAYSSLWRSDGVWEGAPGEEGAH 424
S AP P PP P G S A + GAPG +G
Sbjct: 1036 ENGSPGAPGAPGHPG----PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPR 1091
Query: 425 RD 426
D
Sbjct: 1092 GD 1093
Score = 43.9 bits (102), Expect = 3e-04
Identities = 80/274 (29%), Positives = 98/274 (35%), Gaps = 64/274 (23%)
Query: 106 GLMGAAPPGPPSPSAAD-TPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRS 164
GLMGA GPP P+ A+ P R A A G+ PR E +A
Sbjct: 408 GLMGAR--GPPGPAGANGAPGLRGGAGEPGKN---GAKGEPGPRGERGEAGIPG------ 456
Query: 165 LAALFDSLRHVPG--GAEPAGGEVAAPAA-GL-GGAGTGGAGGDVAGPAGATAIPGARKV 220
VPG G + G P A GL G AG GA G GPAG IPG K
Sbjct: 457 ----------VPGAKGEDGKDGSPGEPGANGLPGAAGERGAPG-FRGPAGPNGIPG-EKG 504
Query: 221 PLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVE----FFELLGPDYGAGT 276
P R P GP+GP + G E G + V + G G G+
Sbjct: 505 PAGERGAP---------------GPAGPRGAAG--EPGRDGVPGGPGMRGMPGSPGGPGS 547
Query: 277 EAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPW---SVPGCSPTK 333
+ +P G S GPP P P V+G +P P PG + +
Sbjct: 548 D------GKPGPPGSQGESGRPGPP--GPSGPRGQPGVMG---FPGPKGNDGAPGKNGER 596
Query: 334 KSP-LTAPRGGLTLNEPLSPLYPAAADSPGGEDG 366
P P+G N P P PGG+ G
Sbjct: 597 GGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKG 630
Score = 39.3 bits (90), Expect = 0.007
Identities = 81/311 (26%), Positives = 99/311 (31%), Gaps = 73/311 (23%)
Query: 110 AAPPGPP-------------SPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAA 156
A PPGPP SP P + A PS P A G + P + ++
Sbjct: 176 AGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGR 235
Query: 157 AASLQSRSLAALFDSLRHVPGGAEPAG--------------------GEVAAPAAGLGGA 196
R L PG PAG GE AP GL G
Sbjct: 236 PGRPGERGLPG-------PPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAP--GLKGE 286
Query: 197 -GTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSF---FTEPSRAGGGGCGPSGPDVSL 252
G G G GP G PG R P LP + + +R G GP GP +
Sbjct: 287 NGLPGENG-APGPMGPRGAPGERGRP----GLPGAAGARGNDGARGSDGQPGPPGPPGTA 341
Query: 253 G-DLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPP---------- 301
G GA+ +GP G+ A EP AGA GPP
Sbjct: 342 GFPGSPGAKGE-----VGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKG 396
Query: 302 ELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADSP 361
E+ P P ++G P P G +P + P EP A P
Sbjct: 397 EMGPAGIPGAPGLMGARGPPGPAGANG-APGLRGGAGEPGKNGAKGEPGPRGERGEAGIP 455
Query: 362 G-----GEDGR 367
G GEDG+
Sbjct: 456 GVPGAKGEDGK 466
Score = 38.9 bits (89), Expect = 0.009
Identities = 75/275 (27%), Positives = 83/275 (30%), Gaps = 59/275 (21%)
Query: 112 PPGPPSPSA--ADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALF 169
PPGP P DT P P P P + A A
Sbjct: 619 PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAP---------- 668
Query: 170 DSLRHVPGGAEPAG--GEVAAP----AAGL-GGAGTGGAGGDVA-----GPAGATAIPGA 217
PGG AG GE P A GL GGAG G G GP GA PG
Sbjct: 669 ----GAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGL 724
Query: 218 RKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTE 277
+ +P R G G GP G G GA+ V + GP G
Sbjct: 725 QGMP-------------GERGGLGSPGPKGDKGEPGG--PGADGVPGKD--GPRGPTGPI 767
Query: 278 AAVLLAAEPLDVFPAGASVLRG--PPELEPGL--FEPPPAVVGNLLYPEPWSVPGCSPTK 333
A +P D GA L G P PG PP G P PG +
Sbjct: 768 GPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGER 827
Query: 334 KSPLTAPRGGLTLNEPLSPLYPAAADSPGGEDGRG 368
+P GG P A PGG G
Sbjct: 828 GAPGEKGEGG----------PPGVAGPPGGSGPAG 852
Score = 36.2 bits (82), Expect = 0.058
Identities = 72/289 (24%), Positives = 92/289 (31%), Gaps = 36/289 (12%)
Query: 109 GAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAH----GKAAPRREASQ--AAAAASLQS 162
GA PPGP A P P AA + P G P+ + + A +
Sbjct: 697 GAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPG 756
Query: 163 RSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGG-AGTGGAGGD-----VAGPAGATAIPG 216
+ PG A G + A GL G AG G+ G+ GPAG PG
Sbjct: 757 KDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPG 816
Query: 217 ARKVP----------LRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDL-EKGAEAVEFF 265
P + PP P G G GP GP G+ G F
Sbjct: 817 QNGEPGGKGERGAPGEKGEGGPPGVAGPP--GGSGPAGPPGPQGVKGERGSPGGPGAAGF 874
Query: 266 E----LLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYP 321
L GP G + P P G + G P PG+ P G+ P
Sbjct: 875 PGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPG-SPGVSGPK----GDAGQP 929
Query: 322 EPWSVPGCSPTKKSPLTAPRGGLTLNEPLS--PLYPAAADSPGGEDGRG 368
PG +P G+T L+ P P SPG + +G
Sbjct: 930 GEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKG 978
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 47.8 bits (112), Expect = 2e-05
Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 110 AAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALF 169
+APPG P PSAA T A + P+ + P ++ +SR + L
Sbjct: 84 SAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLK 143
Query: 170 DSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRAR 225
++ PG AE GG G GG G+GG+GG G G P RAR
Sbjct: 144 NNS---PGTAEGCGGG----GGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRAR 192
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 47.8 bits (112), Expect = 2e-05
Identities = 83/321 (25%), Positives = 109/321 (33%), Gaps = 68/321 (21%)
Query: 107 LMGAAPPGPP-SPSAADTPAKRP--LAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSR 163
L G P P S A P +P L PS P + + P S + + +L
Sbjct: 376 LEGRGPQTPRRSRPRAPAPVPQPFSLPEPSQPILPSVLSLLGLPTPGPSHSDGSFNL--- 432
Query: 164 SLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLR 223
S H+P + G P + + G G ++ GA A P A K P+
Sbjct: 433 -----LGSDAHLPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASKAPV- 486
Query: 224 ARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYG---AGTEAAV 280
+P PS G G GP+ P L G EA F P+ G +G
Sbjct: 487 ---VPSPVLQSPSEGLGMGAGPACPLPPLA----GGEA---FPFPSPEQGLALSGAGFPG 536
Query: 281 LLAAEPLDVF---PAGASVLR------------------------GP-PELEPGLFEPPP 312
+L A PL + P + +L GP P L PG E P
Sbjct: 537 MLGALPLPLSLGQPPPSPLLNHSLFGVLTGGGGQPPPEPLLPPPGGPGPPLAPGEPEGPS 596
Query: 313 AVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADSPGGEDGRG---- 368
+V +LL P P S P P L PL L P A D G +G G
Sbjct: 597 LLVASLLPPPP------SDLLPPPSAPPSNLLASFLPLLALGPTAGDGEGSAEGAGGPSG 650
Query: 369 ----HLASFAP-FFPDCALPP 384
L +P FP + PP
Sbjct: 651 EPFSGLGDLSPLLFPPLSAPP 671
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 47.4 bits (111), Expect = 3e-05
Identities = 57/228 (25%), Positives = 82/228 (35%), Gaps = 15/228 (6%)
Query: 126 KRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGE 185
++P + S PT P +A + +AS AAA ASL S AA + +P G P
Sbjct: 426 RQPKSPGSTPTT--PTSSQAPQKLDASAAAAPASLPPSSPAAPIATFSLLPAGGAPTVFS 483
Query: 186 VAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGP 245
+ + TG +G + A PG P +PPS + P
Sbjct: 484 FGSSSLKSSATVTGEPPSYSSGSDSSKAAPGPG--PSTFSFVPPSKASLAPTPAASPVAP 541
Query: 246 SGPDVSLGD--LEKGAEAVEFFEL------LGPDYGAGTEAAVLLAAEPLDVFPAGASVL 297
S S G + E+ + + P + T A + +E V
Sbjct: 542 SAASFSFGSSGFKPTLESTPVPSVSAPNIAMKPSFPPSTSAVKVNLSEKFTAAATSTPVS 601
Query: 298 --RGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCS-PTKKSPLTAPRG 342
+ P + P PA G L +P P S P S P K S L +P G
Sbjct: 602 SSQSAPPMSPFSSASKPAASGPLSHPTPLSAPPSSVPLKSSVLPSPSG 649
Score = 30.0 bits (66), Expect = 4.2
Identities = 61/265 (23%), Positives = 91/265 (34%), Gaps = 49/265 (18%)
Query: 112 PPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRRE-ASQAAAAASLQSRSLAALFD 170
P G S A K +PS P A A AA RR+ ASQA A +L
Sbjct: 1062 PQGADSTMLATKTVKHGAPSPSHPISAPQAAAAAALRRQMASQAPAVNTLTE-------S 1114
Query: 171 SLRHVPG--GAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLP 228
+L++VP + A P+ +G + P P P+ A
Sbjct: 1115 TLKNVPQVVNVQELKNNPATPSTAMGS----------SVPYSTAKTPHPVLTPVAANQAK 1164
Query: 229 PSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLD 288
+ PSGP + G L G +A ++ T +A ++P
Sbjct: 1165 QGSLINSLK-------PSGPTPASGQLSSGDKASGTAKI--ETAVTSTPSASGQFSKPFS 1215
Query: 289 VFPAGASVLRGPPELEPGLFEPPP-----AVVGNLLYPEPWSVP-------GCSPTKKS- 335
P+G G+ P P A G + S P G P+ ++
Sbjct: 1216 FSPSGTG-------FNFGIITPTPSSNFTAAQGATPSTKESSQPDAFSSGGGSKPSYEAI 1268
Query: 336 PLTAPRGGLTLNEPLSPLYPAAADS 360
P ++P G+T +P PAA+ S
Sbjct: 1269 PESSPPSGITSASNTTPGEPAASSS 1293
Score = 30.0 bits (66), Expect = 4.2
Identities = 48/193 (24%), Positives = 58/193 (30%), Gaps = 26/193 (13%)
Query: 110 AAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALF 169
A PP S SA + APSA V AP Q + AS + +
Sbjct: 1646 AQPPAASSSSAFNQLTNNTATAPSATPVFGQVAASTAPSLFGQQTGSTASTAAATPQV-- 1703
Query: 170 DSLRHVPGGAEPAGGEVAAPAAG---LGGAGTGGAGGDVAGPAGATAIPGARKVPL---R 223
G + PA G A G G A G A + + PG VP
Sbjct: 1704 ----SSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAASVFSFSQPGFSSVPAFGQP 1759
Query: 224 ARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYG---------- 273
A + P S T S G S S G F + P +G
Sbjct: 1760 ASSTPTS--TSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPAFGQSPGFGQGGS 1817
Query: 274 --AGTEAAVLLAA 284
GT AA AA
Sbjct: 1818 VFGGTSAATTTAA 1830
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 47.4 bits (111), Expect = 3e-05
Identities = 65/248 (26%), Positives = 86/248 (34%), Gaps = 11/248 (4%)
Query: 99 KQIKRCSG-LMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAA 157
+Q+KR G PGPP P T A A +A AA A AA +++ Q
Sbjct: 55 RQLKRAHGCFQDGRSPGPPPPVGVKTVALSAKEAAAAAAAAAAA-AAAAQQQQQQQQQQQ 113
Query: 158 ASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGA 217
Q + L HV G ++PA V A +GL G A A A A
Sbjct: 114 QQQQQQQQQQQQQQLNHVDGSSKPA---VLAAPSGLERYGLSAAAAAAAAAAAAVEQRSR 170
Query: 218 RKVPLRARNLPPSFFTEPSRAGGGGCGPSG---PDVSLGDLEKGAEAVEFFELLGPDYGA 274
+ P +L S T +R G GP+G P G E ++
Sbjct: 171 FEYPPPPVSLGSSSHT--ARLPNGLGGPNGFPKPTPEEGPPELNRQSPNSSSAAASVASR 228
Query: 275 GTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKK 334
L+ P + G L PP L P PA L P P ++ P
Sbjct: 229 RGTHGGLVTGLP-NPGGGGGPQLTVPPNLLPQTLLNGPASAAVLPPPPPHALGSRGPPTP 287
Query: 335 SPLTAPRG 342
+P AP G
Sbjct: 288 APPGAPGG 295
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 47.0 bits (110), Expect = 3e-05
Identities = 62/189 (32%), Positives = 77/189 (40%), Gaps = 27/189 (14%)
Query: 97 LQKQIKRCSGLMGAAPPGPPSPSAADTPAKRPLAAPS--APTVAA--PAHGKAAPRREAS 152
+++ K+ SG M APPG +P A + P PS A TVA P+H A A+
Sbjct: 20 IEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAATVAGMQPSHAMAGHNAAAA 79
Query: 153 QAAAAASLQSRSLAALFDSLRHVPGGAE--PAGGEVAAPAAGLGGAGTGGAGGDVAGPAG 210
AAAAA AA + H+P G P G + GLG G A D
Sbjct: 80 AAAAAA-------AAAAAATYHMPPGVSQFPHGAMGSYCNGGLGNMGELPAYTDGMRGGA 132
Query: 211 ATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGP 270
AT GA P R S F PS AG G +G L A+A + LGP
Sbjct: 133 ATGWYGANPDP---RYSSISRFMGPS-AGVNVAG-------MGSLTGIADAA---KSLGP 178
Query: 271 DYGAGTEAA 279
+ A AA
Sbjct: 179 LHAAAAAAA 187
Score = 38.5 bits (88), Expect = 0.012
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 16/112 (14%)
Query: 92 NHRKYLQKQIK-------RCSGLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGK 144
NHR +++Q K + G +G PP PPSP P P + P G+
Sbjct: 239 NHRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRVAVPVLVKDGKPCQNGASTPTPGQ 298
Query: 145 AAPRREASQAAAAASLQSRSLAALFDSLRHVPGGA----EPAGGEVAAPAAG 192
A P+ A A S S AL H PGG + A GE + G
Sbjct: 299 AGPQPPAPTPAPELEELSPSPPAL-----HGPGGGLAALDAAAGEYSGGVLG 345
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 47.0 bits (110), Expect = 3e-05
Identities = 60/234 (25%), Positives = 77/234 (32%), Gaps = 20/234 (8%)
Query: 174 HVPGGAEPAGGEVA---APAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRA-RNLPP 229
++PG + A G + A AG GG G GG GG AG G PG+ V A R P
Sbjct: 9 YLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPS 68
Query: 230 SFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDV 289
S S G S L + A+ P A AA A E
Sbjct: 69 SVKMVQSDFMQGAMAASNGGHMLSHAHQWVTAL-------PHAAAAAAAAAAAAVEASSP 121
Query: 290 FPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGGLTLNEP 349
+ A + G P+ P PPP G P+ G RG L P
Sbjct: 122 WSGSAVGMAGSPQQPPQ--PPPPPPQG----PDVKGGAGRDDLHAGTALHHRGPPHLGPP 175
Query: 350 LSPL---YPAAADSPGGEDGRGHLASFAPFFPDCALPPPPPPHQVSYDYSAGYS 400
P +P + A+ A P A PPP + Y G++
Sbjct: 176 PPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFT 229
Score = 32.3 bits (72), Expect = 0.84
Identities = 28/94 (29%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 115 PPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRH 174
PP P P AA +A AA A P Q SL L
Sbjct: 175 PPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSL-----------LYS 223
Query: 175 VPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGP 208
PGG G A P G GG G GG + P
Sbjct: 224 QPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHP 257
Score = 30.8 bits (68), Expect = 2.4
Identities = 40/141 (28%), Positives = 52/141 (36%), Gaps = 25/141 (17%)
Query: 132 PSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFD----SLRHVPGGAEPAGGEVA 187
P P P AA A+ AAAAA+ S+A SL + G G ++
Sbjct: 176 PPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLS 235
Query: 188 APAAGLGGAGTGGAGGDVAGPAGATAIPGARK--VPLRARN------------LPPSFFT 233
AP G GG GG G A + PG + P A + P
Sbjct: 236 APP------GPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHPHHAQ 289
Query: 234 EPSRAGGGGCGPSGPDVSLGD 254
P GGGG G +GP ++ D
Sbjct: 290 GPPHHGGGG-GGAGPGLNSHD 309
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 46.6 bits (109), Expect = 4e-05
Identities = 81/340 (23%), Positives = 107/340 (31%), Gaps = 81/340 (23%)
Query: 83 KPGKSKRKVNHRKYLQKQIKRCSGLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAH 142
+PG + + + K+ +G AP P S + PA PLA SAP AAPA+
Sbjct: 296 RPG-DPQSAQDKARMDKEYLSLMAELGEAPV-PASVGSTSGPATTPLA--SAPRPAAPAN 351
Query: 143 GKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAG 202
P ++ + + S G + P G+ G G GG G
Sbjct: 352 NPPPPSLMSTTQSRPPWMNS--------------------GPSESRPYHGMHGGGPGGPG 391
Query: 203 GDVAGP-------AGATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSGP------D 249
G GP T G + PP + P G P G D
Sbjct: 392 G---GPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMD 448
Query: 250 VSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFE 309
LG G+ + G ++ P+ + P PP G +
Sbjct: 449 QYLGSTPVGSGVYRLHQGKG-----------MMPPPPMGMMPP-------PPPPPSG--Q 488
Query: 310 PPPAVVGNL-------LYPEPWSVPGCSPTKKSPL--------TAPRGGLTLNEPLSPLY 354
PPP G L P P P S +PL T G P
Sbjct: 489 PPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQ 548
Query: 355 PAAADSPGGEDGRGHLA------SFAPFFPDCALPPPPPP 388
AAA SPG +G+ P P A PPPPPP
Sbjct: 549 AAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPP 588
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 46.6 bits (109), Expect = 4e-05
Identities = 81/340 (23%), Positives = 107/340 (31%), Gaps = 81/340 (23%)
Query: 83 KPGKSKRKVNHRKYLQKQIKRCSGLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAH 142
+PG + + + K+ +G AP P S + PA PLA SAP AAPA+
Sbjct: 296 RPG-DPQSAQDKARMDKEYLSLMAELGEAPV-PASVGSTSGPATTPLA--SAPRPAAPAN 351
Query: 143 GKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAG 202
P ++ + + S G + P G+ G G GG G
Sbjct: 352 NPPPPSLMSTTQSRPPWMNS--------------------GPSESRPYHGMHGGGPGGPG 391
Query: 203 GDVAGP-------AGATAIPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSGP------D 249
G GP T G + PP + P G P G D
Sbjct: 392 G---GPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMD 448
Query: 250 VSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFE 309
LG G+ + G ++ P+ + P PP G +
Sbjct: 449 QYLGSTPVGSGVYRLHQGKG-----------MMPPPPMGMMPP-------PPPPPSG--Q 488
Query: 310 PPPAVVGNL-------LYPEPWSVPGCSPTKKSPL--------TAPRGGLTLNEPLSPLY 354
PPP G L P P P S +PL T G P
Sbjct: 489 PPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQ 548
Query: 355 PAAADSPGGEDGRGHLA------SFAPFFPDCALPPPPPP 388
AAA SPG +G+ P P A PPPPPP
Sbjct: 549 AAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPP 588
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 46.6 bits (109), Expect = 4e-05
Identities = 45/145 (31%), Positives = 56/145 (38%), Gaps = 22/145 (15%)
Query: 111 APPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFD 170
APP PP+P AA PA+ P AA +A T A P+ G A P A +AA A+ A
Sbjct: 132 APPPPPAPVAAAAPARAPRAAAAAAT-APPSPGPAQPGPRAQRAAPLAAPPPAPAAP--- 187
Query: 171 SLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPS 230
P A PAG A P A VA P P + + PP
Sbjct: 188 -----PAVAPPAGPRRAPPPA-------------VAAREPPLPPPPQPPAPPQQQQPPPP 229
Query: 231 FFTEPSRAGGGGCGPSGPDVSLGDL 255
P G G + VSL ++
Sbjct: 230 QPQPPPEGGAVRAGGAARPVSLREV 254
Score = 43.5 bits (101), Expect = 4e-04
Identities = 45/127 (35%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 109 GAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAAL 168
GA PP PP + P AP+A AAP A P A AAAA + R+ AA
Sbjct: 105 GATPPAPP---------RAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAA 155
Query: 169 FDSLRHVPGGAEPA-GGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIP----GARKVPLR 223
+ PG A+P + AAP A A A VA PAG P AR+ PL
Sbjct: 156 -ATAPPSPGPAQPGPRAQRAAPLAAPPPA--PAAPPAVAPPAGPRRAPPPAVAAREPPLP 212
Query: 224 ARNLPPS 230
PP+
Sbjct: 213 PPPQPPA 219
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 46.2 bits (108), Expect = 6e-05
Identities = 83/344 (24%), Positives = 117/344 (34%), Gaps = 62/344 (18%)
Query: 111 APPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFD 170
+P P P A A PL AP +P + P A P +A A A LQ+
Sbjct: 612 SPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQA-------- 663
Query: 171 SLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRAR---NL 227
P + P + PA + P +A P ++ P A +
Sbjct: 664 --PFSPPPSPPVQAPFSPPA---------------SPPVSPSATPPSQAPPSLAAPPLQV 706
Query: 228 PPSFFTEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPL 287
PPS P + P P + + + P LLAA PL
Sbjct: 707 PPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPL 766
Query: 288 DVFPAGASVL------RGPPELEPGLFEPP----PAVVGNLLYPEPWS-------VPGCS 330
V P+ + L + PP+ P L PP P+ + P+S P +
Sbjct: 767 QVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLAT 826
Query: 331 PTKKSP--LTAPRGGLTLNEPLSPLY--PAAADSPGGE---DGRGHLASFAPFFPDCALP 383
P ++P L AP + + P SP P +PG + G + AP P
Sbjct: 827 PPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPG------P 880
Query: 384 PPPPPHQVSYDYS----AGYSRTAYSSLWRSDGVWEGAPGEEGA 423
PPPP S S AG+S +A S+ G G G A
Sbjct: 881 PPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAA 924
Score = 44.7 bits (104), Expect = 2e-04
Identities = 92/369 (24%), Positives = 119/369 (32%), Gaps = 102/369 (27%)
Query: 103 RCSGLMGAAPPGPPSPSAADTPA------------KRPLAAPSAPTVAAPAHGKAAPRRE 150
R GL+ PPG P P TPA ++PL A A + ++APR
Sbjct: 20 RAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPL-AERAGGIGGATIPESAPRAG 78
Query: 151 ASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLG---------------- 194
+++A +S S P + G V++P G
Sbjct: 79 PTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISA 138
Query: 195 ---------------GAGTGGAGGDVAGPAGATAIP-------------GARKVPLRARN 226
A + GA D +GP T P G + AR
Sbjct: 139 EETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARP 198
Query: 227 LPPS-------------FFTEPS-------RAGGGGCGPSGPDVSLGDLEKGAEAVEFFE 266
PP+ TEPS AGGG P+ +S + A
Sbjct: 199 RPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARS--- 255
Query: 267 LLGPDYGAGTEAAVLLAAEPLDVFPAGASVLRGPPELEPGLFEPPPAVVGNLLYPEPWSV 326
GP GT A A P P G LR PP++ P + PA+ L P +
Sbjct: 256 --GPS-ARGTPRA---PAHPSQPKPKGLQALR-PPQVTPPRKDAAPAL--GPLSSSPLAT 306
Query: 327 PGCSPTKKSPLTAPRGGLT-LNEPLSPLYPAAADSPGGEDGRGHLASFAPFFPDC--ALP 383
P S TK P+ P T L L P P A P LA +P P LP
Sbjct: 307 PSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLP--------LAPPSPSAPPSLQTLP 358
Query: 384 PPP--PPHQ 390
PP PP Q
Sbjct: 359 SPPATPPSQ 367
Score = 37.0 bits (84), Expect = 0.034
Identities = 47/167 (28%), Positives = 60/167 (35%), Gaps = 28/167 (16%)
Query: 108 MGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAH-----------GKAAPRREASQAAA 156
+ PP PPS S + T + LA S+ + P A+P +A AA
Sbjct: 876 LAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAAC 935
Query: 157 AASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPG 216
+ SR A + R PG P PA G G A + GP AT PG
Sbjct: 936 HPAAWSRGPAPPL-AFRGAPGAPLP-----WPPATGPGSADGLCTIYETEGPESATPAPG 989
Query: 217 ARKVPLRARNLPPSFFTEPSR----AGGGGCGPSGPDVSLGDLEKGA 259
A + PS T + AG G S LG+L GA
Sbjct: 990 -------ALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGA 1029
Score = 34.7 bits (78), Expect = 0.17
Identities = 37/122 (30%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 106 GLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKA----APRREASQAAAAASLQ 161
G GA P PP+ + P A PA G +P +AAA A
Sbjct: 952 GAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAG 1011
Query: 162 SRSLAALFDSLRHVPGGAEPAGG-----------EVAAPAAGLGGAGTGGA-GGDVAGPA 209
+ S + L +P GA A A AAG G G GGA GG V G A
Sbjct: 1012 ASSRSPKQARLGELPLGALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGAEGGGVTGGA 1071
Query: 210 GA 211
A
Sbjct: 1072 RA 1073
Score = 30.4 bits (67), Expect = 3.2
Identities = 72/304 (23%), Positives = 97/304 (31%), Gaps = 65/304 (21%)
Query: 110 AAPPGPPSPSAADTPAKRPL--------AAPSAPTVAAPAHGKAAPRREASQAAAAASLQ 161
A+PP S S A +P PL ++ ++ + AP P E + A SLQ
Sbjct: 465 ASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQ 524
Query: 162 SRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVP 221
+ + L ++P A P +AP + P T P P
Sbjct: 525 TPPASLTTPPLENLPSLAPPPLQTASAP---------------LTTPHLETP-PCPAPCP 568
Query: 222 LRARNLPPSFFTEPSRAGGGGCG---PSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEA 278
L+A PPS T P P P +G + L P +A
Sbjct: 569 LQA---PPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPP----PQA 621
Query: 279 AVLLAAEPLDVFPA-----GASVLRGPPELEPGL---------FEPPPAVVGNLLYPEPW 324
LA PL P+ S L P P F PPP+ + P
Sbjct: 622 PPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPA 681
Query: 325 SVPGCSPTKKSPLTAPRGGLTLNEPLSPLYPAAADSPGGEDGRGHLASFAPFFPDCALPP 384
S P SP+ P AP +L P + P+ SP P P PP
Sbjct: 682 S-PPVSPSATPPSQAPP---SLAAPPLQVPPSPPASP-------------PMSPSATPPP 724
Query: 385 PPPP 388
PP
Sbjct: 725 QAPP 728
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 46.2 bits (108), Expect = 6e-05
Identities = 101/390 (25%), Positives = 123/390 (31%), Gaps = 82/390 (21%)
Query: 15 PFGFGGSPDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEG--GDVREATRDLLSFIDS 72
P G G P G G G D G TG P G +G G E LL ++S
Sbjct: 138 PIGLDGKP-GHPGPKG--DMGL------TGPPGQPGPQGQKGEKGQCGEYPHRLLPLLNS 188
Query: 73 ASSNIKLALDKPGKSKRKVNHRKYLQKQIKRCSGLMGAAPPGPPSPSAADTPAKR----- 127
+ L P KR+ + Q I+ PPGPP P P
Sbjct: 189 ------VRLAPPPVIKRRTFQGEQSQASIQ--------GPPGPPGPPGPSGPLGHPGLPG 234
Query: 128 PLAAPSAPTVAAPA--------HGKAAPRREASQAAAAASLQSRSLA-ALFDSLRHVPGG 178
P+ P P P HG+ R + + +A A +PG
Sbjct: 235 PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGT 294
Query: 179 AEPAGGEVAAPAAGL-------GGAGTG-GAGGDVAGPAGATAIPGAR-KVPLRARNLPP 229
G E + GL G AG G G GP G PG + + + + PP
Sbjct: 295 KGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPP 354
Query: 230 SFFTEPSRAGGGG-CGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLD 288
+ G G GP GP S G+ KG DY A+
Sbjct: 355 GQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMV---------DYNGNINEALQ------- 398
Query: 289 VFPAGASVLRGPPELEPGLFEPP-----PAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGG 343
L GPP L PG PP P G + P P PG K PRG
Sbjct: 399 --EIRTLALMGPPGL-PGQIGPPGAPGIPGQKGEIGLPGP---PGHDGEK-----GPRGK 447
Query: 344 LTLNEPLSPLYPAAADSPGGEDG-RGHLAS 372
P P P D P G G GH S
Sbjct: 448 PGDMGPPGPQGPPGKDGPPGVKGENGHPGS 477
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 46.2 bits (108), Expect = 6e-05
Identities = 101/390 (25%), Positives = 123/390 (31%), Gaps = 82/390 (21%)
Query: 15 PFGFGGSPDGLGGAFGALDKGCCFEDDETGAPAGALLSGAEG--GDVREATRDLLSFIDS 72
P G G P G G G D G TG P G +G G E LL ++S
Sbjct: 176 PIGLDGKP-GHPGPKG--DMGL------TGPPGQPGPQGQKGEKGQCGEYPHRLLPLLNS 226
Query: 73 ASSNIKLALDKPGKSKRKVNHRKYLQKQIKRCSGLMGAAPPGPPSPSAADTPAKR----- 127
+ L P KR+ + Q I+ PPGPP P P
Sbjct: 227 ------VRLAPPPVIKRRTFQGEQSQASIQ--------GPPGPPGPPGPSGPLGHPGLPG 272
Query: 128 PLAAPSAPTVAAPA--------HGKAAPRREASQAAAAASLQSRSLA-ALFDSLRHVPGG 178
P+ P P P HG+ R + + +A A +PG
Sbjct: 273 PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGT 332
Query: 179 AEPAGGEVAAPAAGL-------GGAGTG-GAGGDVAGPAGATAIPGAR-KVPLRARNLPP 229
G E + GL G AG G G GP G PG + + + + PP
Sbjct: 333 KGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPP 392
Query: 230 SFFTEPSRAGGGG-CGPSGPDVSLGDLEKGAEAVEFFELLGPDYGAGTEAAVLLAAEPLD 288
+ G G GP GP S G+ KG DY A+
Sbjct: 393 GQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMV---------DYNGNINEALQ------- 436
Query: 289 VFPAGASVLRGPPELEPGLFEPP-----PAVVGNLLYPEPWSVPGCSPTKKSPLTAPRGG 343
L GPP L PG PP P G + P P PG K PRG
Sbjct: 437 --EIRTLALMGPPGL-PGQIGPPGAPGIPGQKGEIGLPGP---PGHDGEK-----GPRGK 485
Query: 344 LTLNEPLSPLYPAAADSPGGEDG-RGHLAS 372
P P P D P G G GH S
Sbjct: 486 PGDMGPPGPQGPPGKDGPPGVKGENGHPGS 515
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,449,750
Number of Sequences: 37866
Number of extensions: 1573304
Number of successful extensions: 17802
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 1138
Number of HSP's that attempted gapping in prelim test: 11128
Number of HSP's gapped (non-prelim): 5604
length of query: 426
length of database: 18,247,518
effective HSP length: 105
effective length of query: 321
effective length of database: 14,271,588
effective search space: 4581179748
effective search space used: 4581179748
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.