Guide to the Human Genome
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Name: FAM48B2 Sequence: fasta or formatted (817aa) NCBI GI: 210032463
Description:

family with sequence similarity 48, member B2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         83           4
 C cysteine            1.7         14           1
 D aspartate           3.4         28           2
 E glutamate           4.9         40           2
 F phenylalanine       1.8         15           2
 G glycine             7.5         61           2
 H histidine           1.2         10           1
 I isoleucine          2.2         18           1
 K lysine              4.7         38           2
 L leucine             9.4         77           4
 M methionine          1.1          9           1
 N asparagine          2.2         18           1
 P proline            12.2        100           4
 Q glutamine          10.5         86           3
 R arginine            5.3         43           3
 S serine              8.3         68           3
 T threonine           4.0         33           1
 V valine              6.6         54           1
 W tryptophan          1.2         10           1
 Y tyrosine            1.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 48, member B2 [Homo... 
LOC100294444          0.941   PREDICTED: similar to family with sequence similari...
FAM48B1               0.884   hypothetical protein LOC100130302 
FAM48A                0.432   family with sequence similarity 48, member A isoform...
FAM48A                0.415   family with sequence similarity 48, member A isoform ...
TAF4                  0.025   TBP-associated factor 4 
WNK2                  0.024   WNK lysine deficient protein kinase 2 
PCLO                  0.023   piccolo isoform 2 
PCLO                  0.023   piccolo isoform 1 
TSC22D2               0.023   TSC22 domain family, member 2 
RERE                  0.023   atrophin-1 like protein isoform b 
RERE                  0.023   atrophin-1 like protein isoform a 
RERE                  0.023   atrophin-1 like protein isoform a 
AAK1                  0.022   AP2 associated kinase 1 
CDKN1C                0.022   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.022   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.022   cyclin-dependent kinase inhibitor 1C isoform a 
CASKIN2               0.021   cask-interacting protein 2 isoform b 
CASKIN2               0.021   cask-interacting protein 2 isoform a 
SRCAP                 0.020   Snf2-related CBP activator protein 
SFPQ                  0.020   splicing factor proline/glutamine rich (polypyrimidin...
BCORL1                0.020   BCL6 co-repressor-like 1 
NACA                  0.019   nascent polypeptide-associated complex alpha subuni...
MLLT6                 0.018   myeloid/lymphoid or mixed-lineage leukemia (trithora...
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
ADNP2                 0.018   ADNP homeobox 2 
SH3BP1                0.018   SH3-domain binding protein 1 
CREBBP                0.018   CREB binding protein isoform b 
CREBBP                0.018   CREB binding protein isoform a 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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