Guide to the Human Genome
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Name: NKX2-4 Sequence: fasta or formatted (354aa) NCBI GI: 157426823
Description:

NK2 homeobox 4

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.1         64          16
 C cysteine            0.6          2           1
 D aspartate           2.3          8           1
 E glutamate           3.4         12           2
 F phenylalanine       2.0          7           1
 G glycine            11.9         42           3
 H histidine           2.8         10           1
 I isoleucine          1.7          6           1
 K lysine              4.0         14           2
 L leucine             7.1         25           2
 M methionine          3.4         12           1
 N asparagine          2.3          8           1
 P proline            12.4         44           7
 Q glutamine           4.8         17           2
 R arginine            4.5         16           2
 S serine              7.1         25           2
 T threonine           4.0         14           2
 V valine              3.7         13           1
 W tryptophan          0.8          3           1
 Y tyrosine            3.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NK2 homeobox 4 
NKX2-1                0.475   thyroid transcription factor 1 isoform 1 
NKX2-1                0.475   thyroid transcription factor 1 isoform 2 
NKX2-5                0.170   NK2 transcription factor related, locus 5 
NKX2-2                0.167   NK2 transcription factor related, locus 2 
NKX2-3                0.167   NK2 transcription factor related, locus 3 
NKX2-6                0.160   NK2 transcription factor related, locus 6 
NKX2-8                0.146   NK2 homeobox 8 
NKX3-2                0.119   NK3 homeobox 2 
HMX1                  0.102   homeo box (H6 family) 1 
NKX1-1                0.096   PREDICTED: HPX-153 homeobox 
NKX1-1                0.094   PREDICTED: NK1 homeobox 1 
MNX1                  0.089   homeo box HB9 
CDX2                  0.087   caudal type homeobox 2 
NKX3-1                0.087   NK3 homeobox 1 
NKX1-1                0.082   PREDICTED: NK1 homeobox 1 
HOXB3                 0.080   homeobox B3 
DLX2                  0.080   distal-less homeobox 2 
NKX6-1                0.080   NK6 transcription factor related, locus 1 
TLX1                  0.079   T-cell leukemia homeobox 1 
PDX1                  0.079   pancreatic and duodenal homeobox 1 
HMX3                  0.077   H6 family homeobox 3 
HOXD11                0.072   homeobox D11 
HOXD1                 0.072   homeobox D1 
MSX1                  0.072   msh homeobox 1 
TLX2                  0.072   T-cell leukemia homeobox 2 
EVX1                  0.070   even-skipped homeobox 1 
BSX                   0.070   brain specific homeobox 
HMX2                  0.069   H6 family homeobox 2 
HOXA3                 0.067   homeobox A3 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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