Guide to the Human Genome
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Name: FAM181A Sequence: fasta or formatted (354aa) NCBI GI: 31543095
Description:

hypothetical protein LOC90050

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         24           2
 C cysteine            2.5          9           2
 D aspartate           3.1         11           1
 E glutamate           5.9         21           2
 F phenylalanine       2.3          8           1
 G glycine             9.3         33           5
 H histidine           2.3          8           1
 I isoleucine          1.1          4           1
 K lysine              7.1         25           2
 L leucine            10.7         38           3
 M methionine          1.7          6           1
 N asparagine          2.0          7           1
 P proline            12.7         45           3
 Q glutamine           4.5         16           2
 R arginine            7.9         28           2
 S serine              8.8         31           2
 T threonine           2.0          7           2
 V valine              5.6         20           2
 W tryptophan          1.1          4           1
 Y tyrosine            2.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC90050 
FAM181B               0.045   hypothetical protein LOC220382 
APC2                  0.022   adenomatosis polyposis coli 2 
PTPN23                0.021   protein tyrosine phosphatase, non-receptor type 23 [...
PRB1                  0.021   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.018   proline-rich protein BstNI subfamily 2 
FOXO6                 0.014   PREDICTED: forkhead box protein O6 
TESK1                 0.014   testis-specific protein kinase 1 
WNK2                  0.014   WNK lysine deficient protein kinase 2 
COL13A1               0.014   alpha 1 type XIII collagen isoform 18 
COL13A1               0.014   alpha 1 type XIII collagen isoform 14 
COL13A1               0.014   alpha 1 type XIII collagen isoform 10 
LMTK3                 0.013   lemur tyrosine kinase 3 
COL15A1               0.013   alpha 1 type XV collagen precursor 
LOC100131908          0.011   PREDICTED: similar to forkhead box O6 
C12orf51              0.011   chromosome 12 open reading frame 51 
LOC100291539          0.011   PREDICTED: hypothetical protein XP_002347367 
FGD5                  0.011   FYVE, RhoGEF and PH domain containing 5 
C1orf127              0.010   hypothetical protein LOC148345 
SRCAP                 0.010   Snf2-related CBP activator protein 
SOLH                  0.010   small optic lobes 
COL5A2                0.010   alpha 2 type V collagen preproprotein 
SH2D3C                0.010   SH2 domain containing 3C isoform a 
YAP1                  0.010   Yes-associated protein 1, 65kDa isoform 2 
YAP1                  0.010   Yes-associated protein 1, 65kDa isoform 1 
COL11A2               0.010   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.010   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.010   collagen, type XI, alpha 2 isoform 1 preproprotein ...
HES4                  0.010   hairy and enhancer of split 4 isoform 1 
HES4                  0.010   hairy and enhancer of split 4 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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