Guide to the Human Genome
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Search of human proteins with 54607110

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
sapiens]
         (894 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo s...  1856   0.0  
gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo s...  1842   0.0  
gi|31543543 retinoic acid induced 17 [Homo sapiens]                  1054   0.0  
gi|27532984 protein inhibitor of activated STAT X isoform alpha ...    92   2e-18
gi|56699458 protein inhibitor of activated STAT X isoform beta [...    92   2e-18
gi|24850133 protein inhibitor of activated STAT, 4 [Homo sapiens]      88   4e-17
gi|7706637 protein inhibitor of activated STAT, 1 [Homo sapiens]       87   9e-17
gi|115298686 protein inhibitor of activated STAT, 3 [Homo sapiens]     81   4e-15
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]             65   3e-10
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    65   4e-10
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    65   4e-10
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    65   4e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      63   1e-09
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     63   1e-09
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     63   1e-09
gi|153792074 proline rich 12 [Homo sapiens]                            63   1e-09
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      59   2e-08
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       59   2e-08
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    59   3e-08
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    59   3e-08
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    59   3e-08
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    58   3e-08
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         58   4e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni...    57   6e-08
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           57   8e-08
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 57   8e-08
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]         56   1e-07
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ...    56   1e-07
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    56   1e-07
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...    56   1e-07

>gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
           sapiens]
          Length = 894

 Score = 1856 bits (4808), Expect = 0.0
 Identities = 894/894 (100%), Positives = 894/894 (100%)

Query: 1   MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
           MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP
Sbjct: 1   MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60

Query: 61  MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
           MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF
Sbjct: 61  MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120

Query: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
           TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS
Sbjct: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180

Query: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
           QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL
Sbjct: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240

Query: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
           YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA
Sbjct: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300

Query: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPY 360
           PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPY
Sbjct: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPY 360

Query: 361 MSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQHNLAVSN 420
           MSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQHNLAVSN
Sbjct: 361 MSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQHNLAVSN 420

Query: 421 HVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTS 480
           HVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTS
Sbjct: 421 HVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTS 480

Query: 481 HKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCIT 540
           HKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCIT
Sbjct: 481 HKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCIT 540

Query: 541 KIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLES 600
           KIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLES
Sbjct: 541 KIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLES 600

Query: 601 YLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVK 660
           YLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVK
Sbjct: 601 YLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVK 660

Query: 661 PDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPG 720
           PDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPG
Sbjct: 661 PDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPG 720

Query: 721 QGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMA 780
           QGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMA
Sbjct: 721 QGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMA 780

Query: 781 PAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATG 840
           PAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATG
Sbjct: 781 PAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATG 840

Query: 841 VMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNNDDLLSLFENN 894
           VMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNNDDLLSLFENN
Sbjct: 841 VMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNNDDLLSLFENN 894


>gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
           sapiens]
          Length = 920

 Score = 1842 bits (4771), Expect = 0.0
 Identities = 894/920 (97%), Positives = 894/920 (97%), Gaps = 26/920 (2%)

Query: 1   MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
           MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP
Sbjct: 1   MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60

Query: 61  MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
           MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF
Sbjct: 61  MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120

Query: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
           TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS
Sbjct: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180

Query: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
           QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL
Sbjct: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240

Query: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
           YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA
Sbjct: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300

Query: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT--------------------------R 334
           PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT                          R
Sbjct: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTR 360

Query: 335 SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE 394
           SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE
Sbjct: 361 SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE 420

Query: 395 LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN 454
           LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN
Sbjct: 421 LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN 480

Query: 455 TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL 514
           TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL
Sbjct: 481 TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL 540

Query: 515 VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC 574
           VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC
Sbjct: 541 VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC 600

Query: 575 PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI 634
           PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI
Sbjct: 601 PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI 660

Query: 635 LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI 694
           LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI
Sbjct: 661 LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI 720

Query: 695 AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP 754
           AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP
Sbjct: 721 AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP 780

Query: 755 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 814
           ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP
Sbjct: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840

Query: 815 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL 874
           PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL
Sbjct: 841 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL 900

Query: 875 GPPDLPTNNNDDLLSLFENN 894
           GPPDLPTNNNDDLLSLFENN
Sbjct: 901 GPPDLPTNNNDDLLSLFENN 920


>gi|31543543 retinoic acid induced 17 [Homo sapiens]
          Length = 1067

 Score = 1054 bits (2726), Expect = 0.0
 Identities = 567/956 (59%), Positives = 669/956 (69%), Gaps = 79/956 (8%)

Query: 1    MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
            ++SM+ MKP L    H DGSF Y+SVPWQQ+  QP GSLSVVTTVWGV N +QSQVLGNP
Sbjct: 129  LSSMSSMKPTLS---HSDGSFPYDSVPWQQNTNQPPGSLSVVTTVWGVTNTSQSQVLGNP 185

Query: 61   MGPAGSP---SGSSMMPGVAGGSSALTSPQCLGQQA--FAEGGANKGYVQQGVYSRGGYP 115
            M  A +P    G+ M  G+   +  L SPQ  GQQ    A+ G  + Y+QQ +Y R  YP
Sbjct: 186  MANANNPMNPGGNPMASGMTTSNPGLNSPQFAGQQQQFSAKAGPAQPYIQQSMYGRPNYP 245

Query: 116  GAPGFTTGYAGGPG---GLGLPSHAARPSTDFTQ---AAAAAAVAAAAATATATATATVA 169
            G+ GF   Y GGP    G+G+P H  RP  DFTQ   AAAAAAVAAAAATATATATATVA
Sbjct: 246  GSGGFGASYPGGPNAPAGMGIPPHT-RPPADFTQPAAAAAAAAVAAAAATATATATATVA 304

Query: 170  ALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAG-MNPTGIGGVMGPSGLS--P 226
            ALQE Q+++++QYG MG  Q++NSQF+   GPRGP+   G MNP  +   M PSG+S  P
Sbjct: 305  ALQETQNKDINQYGPMGPTQAYNSQFMNQPGPRGPASMGGSMNPASMAAGMTPSGMSGPP 364

Query: 227  LAMNPTRAAGMTPLYA-GQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYA 285
            + MN  R  G++P    GQR+PQ  YPGP + Q LP Q +KR Y    PG+      QY 
Sbjct: 365  MGMNQPRPPGISPFGTHGQRMPQQTYPGP-RPQSLPIQNIKRPY----PGEPNYGNQQYG 419

Query: 286  PSTAQFAPSPGQPPAP-------SPSYPGHRLPLQQGMTQSLSVPGPT---GLHYKPT-- 333
            P++ QF   PGQ PAP       SP+YPG R+P Q    Q    P PT   G +YKP   
Sbjct: 420  PNS-QFPTQPGQYPAPNPPRPLTSPNYPGQRMPSQPSSGQ---YPPPTVNMGQYYKPEQF 475

Query: 334  ------------------------RSIP--GYPSSPLPGNPTPPMTPSSSVP-YMSPNQE 366
                                    R +P   YP SP+PGNPTPPMTP SS+P Y+SP+Q+
Sbjct: 476  NGQNNTFSGSSYSNYSQGNVNRPPRPVPVANYPHSPVPGNPTPPMTPGSSIPPYLSPSQD 535

Query: 367  VKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLR 426
            VK PF PD+KPN+++L   P+     DELRLTFPVRDGVVLEPFRL+HNLAVSNHVF LR
Sbjct: 536  VKPPFPPDIKPNMSALPPPPANHN--DELRLTFPVRDGVVLEPFRLEHNLAVSNHVFHLR 593

Query: 427  DSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTSHKPLYL 486
             +V++TL+ R DLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTSHKPL+L
Sbjct: 594  PTVHQTLMWRSDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTSHKPLHL 653

Query: 487  KHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNF 546
            KHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNF
Sbjct: 654  KHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNF 713

Query: 547  SS-GTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLN 605
            SS     G    NGEDGVEQTAIKVSLKCPITFRRIQLPARGHDC+H+QCFDLESYLQLN
Sbjct: 714  SSVAASSGNTTLNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCKHVQCFDLESYLQLN 773

Query: 606  CERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVKPDMHI 665
            CERGTWRCPVCNKTALLEGLEVDQYM GIL  IQ+S++EE+TIDPTCSW+PVP+K D+HI
Sbjct: 774  CERGTWRCPVCNKTALLEGLEVDQYMWGILNAIQHSEFEEVTIDPTCSWRPVPIKSDLHI 833

Query: 666  KEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPGQGSSF 725
            K++PDG   KR +T+SP+ ++MP+VMEMIAALGPG +P+    PP     +DY  QG+++
Sbjct: 834  KDDPDGIPSKRFKTMSPSQMIMPNVMEMIAALGPGPSPYPLPPPPGGTNSNDYSSQGNNY 893

Query: 726  LGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTA-CLPSQMAPAGH 784
             G G F   FP   P   ++ +F  GPP +S+  D+P+++   EK  +  +   M  AG 
Sbjct: 894  QGHGNF--DFPHGNPGGTSMNDFMHGPPQLSHPPDMPNNMAALEKPLSHPMQETMPHAGS 951

Query: 785  LDPTHNPGTPGLHTSNLGAPPGPQLHHSN-PPPASRQSLGQ-----ASLGPTGELAFSPA 838
             D  H     GLH  +  +  GP LHHS  PPP   Q   Q      S  P  +L F+P+
Sbjct: 952  SDQPHPSIQQGLHVPHPSSQSGPPLHHSGAPPPPPSQPPRQPPQAAPSSHPHSDLTFNPS 1011

Query: 839  TGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNNDDLLSLFENN 894
            + + G     GA + PEP+LDLLPELTNPDELLSYL PPDLP+N+NDDLLSLFENN
Sbjct: 1012 SALEGQAGAQGASDMPEPSLDLLPELTNPDELLSYLDPPDLPSNSNDDLLSLFENN 1067


>gi|27532984 protein inhibitor of activated STAT X isoform alpha
           [Homo sapiens]
          Length = 572

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 93/349 (26%), Positives = 148/349 (42%), Gaps = 46/349 (13%)

Query: 354 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRL-TFPVRD--GVVLEPF 410
           PS+SV   SP+  V S  L D KP       SP       +++L   P  D   V+++P 
Sbjct: 105 PSTSVTPHSPSSPVGSVLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPT 164

Query: 411 RLQHN----LAVSNHVFQLRDSVYKTLIMRPD----------LELQFK-CYHHEDRQMNT 455
            L  +          +F L     + + +  D          +++Q + C          
Sbjct: 165 SLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQED 224

Query: 456 NWPASVQVSVNA--------TPLTIERGDNKTSHKPLYLKHVCQPGR---NTIQIT-VTA 503
           N+P S+ + VN          P      + K   +PL +  + +      N I I+  + 
Sbjct: 225 NYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASE 284

Query: 504 CCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGV 563
              ++   + LV + +   +LQ L  K +   +H    IK          T  P+ E  +
Sbjct: 285 IGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEKL-------TADPDSE--I 335

Query: 564 EQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLE 623
             T+++VSL CP+   R+ +P R   C H+QCFD   YLQ+N ++ TW CPVC+K A  E
Sbjct: 336 ATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 395

Query: 624 GLEVDQYMLGILIYIQN--SDYEEITIDPTCSWKPV-PVKPDMHIKEEP 669
            L +D    G+ + I N  SD +EI      SW P+ P K  M +  +P
Sbjct: 396 SLILD----GLFMEILNDCSDVDEIKFQEDGSWCPMRPKKEAMKVSSQP 440


>gi|56699458 protein inhibitor of activated STAT X isoform beta
           [Homo sapiens]
          Length = 621

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 93/349 (26%), Positives = 148/349 (42%), Gaps = 46/349 (13%)

Query: 354 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRL-TFPVRD--GVVLEPF 410
           PS+SV   SP+  V S  L D KP       SP       +++L   P  D   V+++P 
Sbjct: 105 PSTSVTPHSPSSPVGSVLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPT 164

Query: 411 RLQHN----LAVSNHVFQLRDSVYKTLIMRPD----------LELQFK-CYHHEDRQMNT 455
            L  +          +F L     + + +  D          +++Q + C          
Sbjct: 165 SLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQED 224

Query: 456 NWPASVQVSVNA--------TPLTIERGDNKTSHKPLYLKHVCQPGR---NTIQIT-VTA 503
           N+P S+ + VN          P      + K   +PL +  + +      N I I+  + 
Sbjct: 225 NYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASE 284

Query: 504 CCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGV 563
              ++   + LV + +   +LQ L  K +   +H    IK          T  P+ E  +
Sbjct: 285 IGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEKL-------TADPDSE--I 335

Query: 564 EQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLE 623
             T+++VSL CP+   R+ +P R   C H+QCFD   YLQ+N ++ TW CPVC+K A  E
Sbjct: 336 ATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 395

Query: 624 GLEVDQYMLGILIYIQN--SDYEEITIDPTCSWKPV-PVKPDMHIKEEP 669
            L +D    G+ + I N  SD +EI      SW P+ P K  M +  +P
Sbjct: 396 SLILD----GLFMEILNDCSDVDEIKFQEDGSWCPMRPKKEAMKVSSQP 440


>gi|24850133 protein inhibitor of activated STAT, 4 [Homo sapiens]
          Length = 510

 Score = 87.8 bits (216), Expect = 4e-17
 Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 21/223 (9%)

Query: 445 CYHHEDRQMNTNWPASVQVSVNAT--------PLTIERGDNKTSHKPLYLKHVCQPGRNT 496
           CY          +P ++ V VN +        P      + K   +P+ L H+      T
Sbjct: 196 CYSDTSCPQEDQYPPNIAVKVNHSYCSVPGYYPSNKPGVEPKRPCRPINLTHLMYLSSAT 255

Query: 497 IQITVT--ACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGT 554
            +ITVT      S+   L LV + +   +LQ L    +   E C   +K           
Sbjct: 256 NRITVTWGNYGKSYSVALYLVRQLTSSELLQRLKTIGVKHPELCKALVKEKLRLD----- 310

Query: 555 PGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCP 614
             P+ E  +  T ++VSL CP+   R+ +P R   C H+QCFD   YLQ+N ++ TW CP
Sbjct: 311 --PDSE--IATTGVRVSLICPLVKMRLSVPCRAETCAHLQCFDAVFYLQMNEKKPTWMCP 366

Query: 615 VCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPV 657
           VC+K A  + L +D  +  IL   +++D  E  +D   SW P+
Sbjct: 367 VCDKPAPYDQLIIDGLLSKILSECEDADEIEYLVDG--SWCPI 407


>gi|7706637 protein inhibitor of activated STAT, 1 [Homo sapiens]
          Length = 651

 Score = 86.7 bits (213), Expect = 9e-17
 Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 24/237 (10%)

Query: 439 LELQFKCYHHEDRQMNTNWPASVQVSVNATPLTI-------ERG-DNKTSHKPLYLKHVC 490
           ++L+F C          ++P ++ V VN  P ++       + G + K   +P+ +  + 
Sbjct: 198 VQLRF-CLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRPINITSLV 256

Query: 491 QPGR---NTIQITVTA-CCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNF 546
           +      NTI ++ TA    ++   + LV + S   +LQ L  K +   +H    IK   
Sbjct: 257 RLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLLQRLRAKGIRNPDHSRALIKEKL 316

Query: 547 SSGTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNC 606
                  T  P+ E  +  T+++VSL CP+   R+ +P R   C H+QCFD   Y+Q+N 
Sbjct: 317 -------TADPDSE--IATTSLRVSLLCPLGKMRLTIPCRALTCSHLQCFDATLYIQMNE 367

Query: 607 ERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVKPDM 663
           ++ TW CPVC+K A  E L +D   + IL Y   +D +EI      +W P+  K ++
Sbjct: 368 KKPTWVCPVCDKKAPYEHLIIDGLFMEILKYC--TDCDEIQFKEDGTWAPMRSKKEV 422


>gi|115298686 protein inhibitor of activated STAT, 3 [Homo sapiens]
          Length = 628

 Score = 81.3 bits (199), Expect = 4e-15
 Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 11/161 (6%)

Query: 514 LVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLK 573
           LV + +  ++LQ L  K +   +H    IK          T  P+ E  V  T+++VSL 
Sbjct: 276 LVRQLTAGTLLQKLRAKGIRNPDHSRALIKEKL-------TADPDSE--VATTSLRVSLM 326

Query: 574 CPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLG 633
           CP+   R+ +P R   C H+Q FD   YLQ+N ++ TW CPVC+K A  E L +D   + 
Sbjct: 327 CPLGKMRLTVPCRALTCAHLQSFDAALYLQMNEKKPTWTCPVCDKKAPYESLIIDGLFME 386

Query: 634 ILIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPAL 674
           IL     SD +EI      SW P+  K +      P G  L
Sbjct: 387 IL--SSCSDCDEIQFMEDGSWCPMKPKKEASEVCPPPGYGL 425


>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
          Length = 1970

 Score = 65.1 bits (157), Expect = 3e-10
 Identities = 60/196 (30%), Positives = 80/196 (40%), Gaps = 23/196 (11%)

Query: 200  GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQ- 258
            G   PSV +GM P       G +G SP A +   A+G +P Y+    P  G PG P    
Sbjct: 1529 GAWSPSVGSGMTP-------GAAGFSPSAASD--ASGFSPGYSPAWSPTPGSPGSPGPSS 1579

Query: 259  ---PLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQG 315
               P P   +  +YS   P  +    G Y P +  ++P+       SPSY     P    
Sbjct: 1580 PYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYS----PTSPN 1635

Query: 316  MTQSLSVPGPTGLHYKPTRSIPGY-PSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPD 374
             + +     PT   Y PT   P Y P+SP     +P  +P+S  P  SP     SP  P 
Sbjct: 1636 YSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPS 1691

Query: 375  LKPNLNSLH-SSPSGS 389
              P   S   +SPS S
Sbjct: 1692 YSPTSPSYSPTSPSYS 1707



 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 96/386 (24%), Positives = 133/386 (34%), Gaps = 48/386 (12%)

Query: 31   SATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPS-GSSMMPGVAGGSSALTSPQCL 89
            SA  P G +S   T W  G          P   A SPS GS M PG AG S +  S    
Sbjct: 1505 SAPSPMGGISPAMTPWNQG--------ATPAYGAWSPSVGSGMTPGAAGFSPSAASDA-- 1554

Query: 90   GQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAA 149
                    G + GY      + G  PG+PG ++ Y   PGG   PS++        ++  
Sbjct: 1555 -------SGFSPGYSPAWSPTPGS-PGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 150  AAAVAAAAATATATATATVAALQEKQSQELS----QYGAMGAGQSFNSQFLQHGGPRGPS 205
                 + + + T+ + +  +      S   S     Y       S  S       P    
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666

Query: 206  VPAGMNPTGIGGVMGPSGLSPL--AMNPTRA--AGMTPLYAGQRLPQHGYPGPPQAQPLP 261
                 +PT           SP   + +PT    +  +P Y+    P +    P  +   P
Sbjct: 1667 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSP 1725

Query: 262  RQG-VKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSL 320
                   +YS   P         Y+P++  + P+       SPSY     P     T + 
Sbjct: 1726 SYSPTSPSYSPTSPSYS-PTSPNYSPTSPNYTPTSPSYSPTSPSYS----PTSPNYTPTS 1780

Query: 321  SVPGPTGLHYKPTR-----SIPGY-PSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPD 374
                PT   Y PT      + P Y PSSP     +P  TPSS  P  SP+    SP  P 
Sbjct: 1781 PNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSS--PSYSPSSPSYSPTSPK 1838

Query: 375  LKPNLNSLHSSPSGSGPCDELRLTFP 400
              P      +SPS S    E   T P
Sbjct: 1839 YTP------TSPSYSPSSPEYTPTSP 1858



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 15/173 (8%)

Query: 688  PSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPGQGSSF--LGPGTFPESFPPTTPSTPTL 745
            PS      +  P +  + P  P   P    Y     S+    P   P S P  TP +PT 
Sbjct: 1760 PSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSS-PRYTPQSPT- 1817

Query: 746  AEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPP 805
              +TP  P  SY    PS   TS K T   PS    +    PT    +P   TS   +P 
Sbjct: 1818 --YTPSSP--SYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP---TSPKYSPT 1870

Query: 806  GPQLHHSNP---PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPE 855
             P+   ++P   P   + S    +  PT  + ++P +    P S + +  +P+
Sbjct: 1871 SPKYSPTSPTYSPTTPKYSPTSPTYSPTSPV-YTPTSPKYSPTSPTYSPTSPK 1922



 Score = 40.8 bits (94), Expect = 0.006
 Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 284  YAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGY-PSS 342
            Y+PS+  ++P+  +    SPSY     P     T +     PT   Y PT   P Y P+S
Sbjct: 1825 YSPSSPSYSPTSPKYTPTSPSYS----PSSPEYTPTSPKYSPTSPKYSPTS--PKYSPTS 1878

Query: 343  PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKP 377
            P     TP  +P+S  P  SP   V +P  P   P
Sbjct: 1879 PTYSPTTPKYSPTS--PTYSPTSPVYTPTSPKYSP 1911



 Score = 38.1 bits (87), Expect = 0.037
 Identities = 46/186 (24%), Positives = 70/186 (37%), Gaps = 20/186 (10%)

Query: 688  PSVMEMIAALGPGAAPF------APLQP----PSVPAPSDYPGQGSSFLGPGTFPESFPP 737
            PS     +   PG +P       +P  P    P +P+P        S   P   P S   
Sbjct: 1548 PSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGG 1607

Query: 738  TTPSTPTLAEFTP--GPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPT---HNPG 792
             TP +P+ +  +P   P   SY    P+   TS   +   PS    +    PT   ++P 
Sbjct: 1608 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1667

Query: 793  TPGLH-TSNLGAPPGPQLHHSNP---PPASRQSLGQASLGPTGELAFSPATGVMGPPSMS 848
            +P    TS   +P  P    ++P   P +   S    S  PT   ++SP +    P S S
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPS 1726

Query: 849  GAGEAP 854
             +  +P
Sbjct: 1727 YSPTSP 1732



 Score = 37.7 bits (86), Expect = 0.048
 Identities = 86/393 (21%), Positives = 125/393 (31%), Gaps = 44/393 (11%)

Query: 14   APHGDGSFAYESVPWQQSATQPAGSLS------VVTTVWGVGNATQSQVLGNPMG--PAG 65
            AP   G  +    PW Q AT   G+ S      +     G   +  S   G   G  PA 
Sbjct: 1506 APSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAW 1565

Query: 66   SPS---------GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPG 116
            SP+          S  +P   G  S   SP     +  + GG           S    P 
Sbjct: 1566 SPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPT 1625

Query: 117  APGFTT---GYAGGPGGLGLPSHAARP-STDFTQAAAAAAVAAAAATATATATATVAALQ 172
            +P ++     Y+         S +  P S  ++  + + +  + + + T+ + +  +   
Sbjct: 1626 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685

Query: 173  EKQSQELS----QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLA 228
               S   S     Y       S  S       P         +PT           SP +
Sbjct: 1686 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1745

Query: 229  MN--PTRAAGMTPLYAGQRLPQHGY-PGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYA 285
             N  PT +   TP           Y P  P   P         YS   P         Y+
Sbjct: 1746 PNYSPT-SPNYTPTSPSYSPTSPSYSPTSPNYTP-----TSPNYSPTSPSYSPTSPS-YS 1798

Query: 286  PSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGY-PSSPL 344
            P++  ++PS  +    SP+Y     P     + S     PT   Y PT   P Y PSSP 
Sbjct: 1799 PTSPSYSPSSPRYTPQSPTY----TPSSPSYSPSSPSYSPTSPKYTPTS--PSYSPSSPE 1852

Query: 345  PGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKP 377
                +P  +P+S  P  SP     SP  P   P
Sbjct: 1853 YTPTSPKYSPTS--PKYSPTSPKYSPTSPTYSP 1883



 Score = 32.0 bits (71), Expect = 2.6
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 699  PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPS-TPTLAEFTPGPPPISY 757
            P +  ++P  P   P    Y     ++  P T    + PT+P+ +PT   +TP  P   Y
Sbjct: 1855 PTSPKYSPTSPKYSPTSPKYSPTSPTY-SPTT--PKYSPTSPTYSPTSPVYTPTSP--KY 1909

Query: 758  QSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPG 795
                P+   TS K +   P+  +P      T++P +PG
Sbjct: 1910 SPTSPTYSPTSPKYSPTSPT-YSPTSPKGSTYSPTSPG 1946


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 100/374 (26%), Positives = 126/374 (33%), Gaps = 57/374 (15%)

Query: 4    MNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGP 63
            + PM P  PP P G              A  P G    V +V GVG   +    GNP  P
Sbjct: 1227 VGPMGPPGPPGPRGPQG--------PNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1278

Query: 64   ----AGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
                 G P G     G AG   A   P   G         N G V  G     G PG PG
Sbjct: 1279 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPG 1336

Query: 120  --FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
                 G  G  G  G P     P          +  A              A  + +Q +
Sbjct: 1337 PAGQDGVGGDKGEDGDPGQPGPP--------GPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1388

Query: 178  ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGM-NPTGIGGVMGPSGLSPLAMNPTRAAG 236
            + ++  A   G    +      GP GP  PAG   P G+ G+ GP G   L         
Sbjct: 1389 KGAKGEAGAEGPPGKT------GPVGPQGPAGKPGPEGLRGIPGPVGEQGL--------- 1433

Query: 237  MTPLYAGQRLP--QHGYPGPPQAQPLPRQGVKRTYSEVY-----PGQQYLQGGQYAPSTA 289
              P  AGQ  P    G PG P  +  P    ++ +  +      PG+Q  +G +  P T 
Sbjct: 1434 --PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQ 1491

Query: 290  QFAPSPGQPPAPSPSYP-----GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP- 343
                + G    P P+ P        LP  QG   +    GP G   K    +PG P SP 
Sbjct: 1492 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAG--QKGDSGLPGPPGSPG 1549

Query: 344  LPGNPTPPMTPSSS 357
             PG    P+   SS
Sbjct: 1550 PPGEVIQPLPILSS 1563



 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 92/345 (26%), Positives = 110/345 (31%), Gaps = 81/345 (23%)

Query: 6    PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
            P K  LP  P   G   +      Q  T P G   VV      G        G+P GP G
Sbjct: 951  PGKDGLPGHPGQRGETGF------QGKTGPPGPGGVVGPQGPTGETGPIGERGHP-GPPG 1003

Query: 66   SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYA 125
             P G   +PG AG   A   P   G Q  +      G   +G     G PGA G   G  
Sbjct: 1004 PP-GEQGLPGAAGKEGAKGDP---GPQGISGKDGPAGL--RGFPGERGLPGAQG-APGLK 1056

Query: 126  GGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAM 185
            GG G  G P     P               +A TA                      G +
Sbjct: 1057 GGEGPQGPPGPVGSPGE-----------RGSAGTA----------------------GPI 1083

Query: 186  GAGQSFNSQFLQHGGPRGPSVPAG----------MNPTGIGGVMGPSGLSPLAMNPTRAA 235
            G             GP+GP  PAG            P G  GV GP GL P    P  + 
Sbjct: 1084 GLPG--------RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL-PGPAGPAGSP 1134

Query: 236  GM--------TPLYAGQR--LPQHGYPGPPQAQ-PLPRQGVKRTYSEVYPGQQYLQGGQY 284
            G          P   G +    ++G PGPP  Q P+   G+     E  P  Q    GQ 
Sbjct: 1135 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK 1194

Query: 285  APSTAQFAPSPGQPPAPS--PSYPGHRLPLQQGMTQSLSVPGPTG 327
                A+  P P  P      P  PG +   + G    +  PGP G
Sbjct: 1195 GDEGARGFPGPPGPIGLQGLPGPPGEK--GENGDVGPMGPPGPPG 1237



 Score = 50.4 bits (119), Expect = 7e-06
 Identities = 86/320 (26%), Positives = 107/320 (33%), Gaps = 49/320 (15%)

Query: 57  LGNPMGPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGG-ANKG----------- 102
           L  P GP G P   G    PG+ G       P  +    F  GG  +KG           
Sbjct: 470 LQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 529

Query: 103 -YVQQGVYSRGGYPGAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAAT 159
             +QQ   +  G PG  G T   G  GGPG  G    +  P     +             
Sbjct: 530 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 589

Query: 160 ATATATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAG--------- 209
                 A        +       G  G  G   +       GP+GP  P G         
Sbjct: 590 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 649

Query: 210 -MNPTGIGGVMGPSGL-----SPLAMNPTRAAGMT--PLYAGQRLPQHGYPGPPQAQPLP 261
            + P G+ G  GP GL     +P A      AG+   P   G   PQ G PGPP  Q  P
Sbjct: 650 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNP 708

Query: 262 -RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGH-RLPLQQGMTQS 319
             QG+      + P  +  +G Q  P  A      G P A  P  PGH     Q G   +
Sbjct: 709 GPQGLPGPQGPIGPPGE--KGPQGKPGLA------GLPGADGP--PGHPGKEGQSGEKGA 758

Query: 320 LSVPGPTG-LHYKPTRSIPG 338
           L  PGP G + Y   R + G
Sbjct: 759 LGPPGPQGPIGYPGPRGVKG 778



 Score = 48.5 bits (114), Expect = 3e-05
 Identities = 87/322 (27%), Positives = 107/322 (33%), Gaps = 67/322 (20%)

Query: 60   PMGPAG--SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
            P GP G   P+G     G AG    L  P   G              +QG     G+PG 
Sbjct: 824  PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG-----------RQGPKGSTGFPGF 872

Query: 118  PGFTTGYAGGPGGLGLPSHAAR--PSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
            PG   G  G  G  G P    +  P+       A           T+          E+ 
Sbjct: 873  PG-ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 931

Query: 176  SQELSQYGAMG-------AGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPL 227
             Q     G +G        G         H G RG +   G   P G GGV+GP G    
Sbjct: 932  PQ--GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG---- 985

Query: 228  AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP----RQGVKRTYS------------- 270
               PT   G  P+  G+R    G PGPP  Q LP    ++G K                 
Sbjct: 986  ---PTGETG--PI--GER-GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGL 1037

Query: 271  EVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHY 330
              +PG++ L G Q AP   +    P  PP P  S PG R         S    GP GL  
Sbjct: 1038 RGFPGERGLPGAQGAPG-LKGGEGPQGPPGPVGS-PGER--------GSAGTAGPIGLPG 1087

Query: 331  KPTRSIPGYPSSP--LPGNPTP 350
            +P    P  P+     PG   P
Sbjct: 1088 RPGPQGPPGPAGEKGAPGEKGP 1109



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 89/345 (25%), Positives = 113/345 (32%), Gaps = 79/345 (22%)

Query: 60  PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEG----GANKGYVQQGVYSRGGYP 115
           P GP G P G    PG  GG      P   G + F +G      +KG+  +G     G P
Sbjct: 581 PPGPTGKP-GKRGRPGADGGRGMPGEPGAKGDRGF-DGLPGLPGDKGH--RGERGPQGPP 636

Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
           G PG     G  G  G  GLP  A               +     T  A     +A +  
Sbjct: 637 GPPGDDGMRGEDGEIGPRGLPGEAG-----------PRGLLGPRGTPGAPGQPGMAGVDG 685

Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
               +    G MG  Q       Q G P    +P    P G  G  GP G   LA  P  
Sbjct: 686 PPGPK----GNMGP-QGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLP-- 738

Query: 234 AAGMTPLYAGQ--RLPQHGYPGPPQAQ-----PLPR--------QGVKRTYSEV------ 272
            A   P + G+  +  + G  GPP  Q     P PR        +G+K +  E       
Sbjct: 739 GADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 798

Query: 273 -YPGQQYLQG-----------GQYAPSTAQFAPSPGQPPAPS--------------PSYP 306
            + G   L+G           G+  P   +    P   P PS              P YP
Sbjct: 799 GFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 858

Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPP 351
           G + P  +G T     PG  G   K  R + G P       PT P
Sbjct: 859 GRQGP--KGSTGFPGFPGANG--EKGARGVAGKPGPRGQRGPTGP 899



 Score = 38.9 bits (89), Expect = 0.022
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 775 LPSQMAPAGHLDPTHNPGTPGL-HTSNLGAPPGPQLH---HSNP-PPASRQSLGQASL-G 828
           LP +  P G L P   PG PG    + +  PPGP+ +      P PP  + + G   L G
Sbjct: 656 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 715

Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEP 856
           P G +      G  G P ++G   A  P
Sbjct: 716 PQGPIGPPGEKGPQGKPGLAGLPGADGP 743



 Score = 37.7 bits (86), Expect = 0.048
 Identities = 54/214 (25%), Positives = 61/214 (28%), Gaps = 47/214 (21%)

Query: 698  GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP---- 753
            GP   P  P  PP  P P+   G G      G   +  PP     P+     PGPP    
Sbjct: 1321 GPVGFPGDP-GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG----PSGEAGPPGPPGKRG 1375

Query: 754  ---PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH------------- 797
                   +          E      P +  P G   P   PG  GL              
Sbjct: 1376 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1435

Query: 798  TSNLGAPPGPQLHHSNP----PPASRQSLGQASL-------GPTGELAFSPATGVMGPPS 846
             +    PPGP      P     P S+   G   L       G  GE       G  G P 
Sbjct: 1436 AAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPG 1495

Query: 847  MSGAGEAPEPALDLLPELTNPDELLSYLGPPDLP 880
              G G  P PA  L P            GPP LP
Sbjct: 1496 AKGDGGIPGPAGPLGPP-----------GPPGLP 1518



 Score = 35.4 bits (80), Expect = 0.24
 Identities = 44/175 (25%), Positives = 60/175 (34%), Gaps = 47/175 (26%)

Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE 769
           P VPA +D     +S  G G + E      P+         GPP  +  + I        
Sbjct: 415 PGVPAETDITE--TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI-------- 464

Query: 770 KSTACLPSQMAPAGHLDPTHNPGTPGLH----------TSNLGAPPGPQL---------H 810
                    M P G   PT  PG PG               L  PPG  L          
Sbjct: 465 ---------MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG 515

Query: 811 HSNPPPASRQSLGQASL--------GPTGELAFSPATGVMGPPSMSGA-GEAPEP 856
              P  +++++  QA L        GP G +  +   G +G P  SGA GE+ +P
Sbjct: 516 SKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 570



 Score = 35.4 bits (80), Expect = 0.24
 Identities = 48/165 (29%), Positives = 54/165 (32%), Gaps = 48/165 (29%)

Query: 699  PGAA----PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPGP 752
            PGAA    P  P+ PP +P     PG       PG      PP             T G 
Sbjct: 1434 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1493

Query: 753  PPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHS 812
            P       IP                  PAG L P   PG PGL        PGPQ    
Sbjct: 1494 PGAKGDGGIPG-----------------PAGPLGP---PGPPGL--------PGPQGPKG 1525

Query: 813  NPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEP 856
            N          + S GP G+   S   G+ GPP   G  GE  +P
Sbjct: 1526 N----------KGSTGPAGQKGDS---GLPGPPGSPGPPGEVIQP 1557



 Score = 35.0 bits (79), Expect = 0.31
 Identities = 76/305 (24%), Positives = 92/305 (30%), Gaps = 40/305 (13%)

Query: 60   PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQA----FAEGGANKGYVQQGVYSRGGYP 115
            P GP G P GS    G AG +  +  P   G Q       E GA      QG   R G  
Sbjct: 1061 PQGPPG-PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1119

Query: 116  GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
            G  G     G AG PG  G       P    ++                   A   A  +
Sbjct: 1120 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGD 1179

Query: 174  KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
             +     Q G  G          Q G       P    P G+ G+ GP G          
Sbjct: 1180 GEPGPRGQQGMFG----------QKGDEGARGFPGPPGPIGLQGLPGPPG------EKGE 1223

Query: 234  AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYS-EVYPGQQYLQGGQYAPSTAQFA 292
               + P+         G PGPP   P   QG       +  PG     GG         A
Sbjct: 1224 NGDVGPM---------GPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEA 1272

Query: 293  PSPGQPPAPSPSYP-GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPL--PGNPT 349
             +PG P       P G R   ++G        GP G    P    P     P+  PG+P 
Sbjct: 1273 GNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG 1330

Query: 350  PPMTP 354
            PP  P
Sbjct: 1331 PPGEP 1335



 Score = 34.3 bits (77), Expect = 0.53
 Identities = 45/172 (26%), Positives = 54/172 (31%), Gaps = 31/172 (18%)

Query: 694  IAALGPGA--APFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPG 751
            +  +GP     P  P  P     P   PG   S  G G   E      P  P   E   G
Sbjct: 1227 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP--GEAGVG 1284

Query: 752  PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP--PGPQL 809
             P               EK  A  P    P G   P  + G  G +   +G P  PGP  
Sbjct: 1285 GPKGE----------RGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPP- 1332

Query: 810  HHSNPPPASRQSLG-----------QASLGPTGELAFSPATGVMGPPSMSGA 850
                P PA +  +G               GP+GE       G  GPP  +GA
Sbjct: 1333 --GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1382



 Score = 32.3 bits (72), Expect = 2.0
 Identities = 41/148 (27%), Positives = 52/148 (35%), Gaps = 25/148 (16%)

Query: 706  PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSS 764
            P  PP +  P   PG       PG   +              F PGPP PI  Q  +P  
Sbjct: 1160 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGF-PGPPGPIGLQG-LPGP 1217

Query: 765  LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLG 823
                       P +    G + P   PG PG        P GPQ  + ++ P     S+G
Sbjct: 1218 -----------PGEKGENGDVGPMGPPGPPG--------PRGPQGPNGADGPQGPPGSVG 1258

Query: 824  QASLGPTGELAFSPATGVMGPPSMSGAG 851
              S+G  GE       G  GPP  +G G
Sbjct: 1259 --SVGGVGEKGEPGEAGNPGPPGEAGVG 1284



 Score = 32.0 bits (71), Expect = 2.6
 Identities = 56/217 (25%), Positives = 74/217 (34%), Gaps = 48/217 (22%)

Query: 179 LSQYGAMGA-GQSFNSQFLQHG----GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
           ++ +GA G  GQ      ++ G    GP GP+ PAG        +MGP GL      PT 
Sbjct: 428 INGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAG--------IMGPPGL----QGPTG 475

Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
             G      G R P  G PG P A  LP            PG   +   +Y    +    
Sbjct: 476 PPG----DPGDRGPP-GRPGLPGADGLPGP----------PGTMLMLPFRYGGDGS---- 516

Query: 294 SPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMT 353
              + P  S      +  LQQ        PGP GL  +P          P+ G  +    
Sbjct: 517 ---KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP---------GPVGGPGSSGAK 564

Query: 354 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSG 390
             S  P     + V+ P  P  KP       +  G G
Sbjct: 565 GESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRG 601


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 100/374 (26%), Positives = 126/374 (33%), Gaps = 57/374 (15%)

Query: 4    MNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGP 63
            + PM P  PP P G              A  P G    V +V GVG   +    GNP  P
Sbjct: 1176 VGPMGPPGPPGPRGPQG--------PNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1227

Query: 64   ----AGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
                 G P G     G AG   A   P   G         N G V  G     G PG PG
Sbjct: 1228 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPG 1285

Query: 120  --FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
                 G  G  G  G P     P          +  A              A  + +Q +
Sbjct: 1286 PAGQDGVGGDKGEDGDPGQPGPP--------GPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1337

Query: 178  ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGM-NPTGIGGVMGPSGLSPLAMNPTRAAG 236
            + ++  A   G    +      GP GP  PAG   P G+ G+ GP G   L         
Sbjct: 1338 KGAKGEAGAEGPPGKT------GPVGPQGPAGKPGPEGLRGIPGPVGEQGL--------- 1382

Query: 237  MTPLYAGQRLP--QHGYPGPPQAQPLPRQGVKRTYSEVY-----PGQQYLQGGQYAPSTA 289
              P  AGQ  P    G PG P  +  P    ++ +  +      PG+Q  +G +  P T 
Sbjct: 1383 --PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQ 1440

Query: 290  QFAPSPGQPPAPSPSYP-----GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP- 343
                + G    P P+ P        LP  QG   +    GP G   K    +PG P SP 
Sbjct: 1441 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAG--QKGDSGLPGPPGSPG 1498

Query: 344  LPGNPTPPMTPSSS 357
             PG    P+   SS
Sbjct: 1499 PPGEVIQPLPILSS 1512



 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 92/345 (26%), Positives = 110/345 (31%), Gaps = 81/345 (23%)

Query: 6    PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
            P K  LP  P   G   +      Q  T P G   VV      G        G+P GP G
Sbjct: 900  PGKDGLPGHPGQRGETGF------QGKTGPPGPGGVVGPQGPTGETGPIGERGHP-GPPG 952

Query: 66   SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYA 125
             P G   +PG AG   A   P   G Q  +      G   +G     G PGA G   G  
Sbjct: 953  PP-GEQGLPGAAGKEGAKGDP---GPQGISGKDGPAGL--RGFPGERGLPGAQG-APGLK 1005

Query: 126  GGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAM 185
            GG G  G P     P               +A TA                      G +
Sbjct: 1006 GGEGPQGPPGPVGSPGE-----------RGSAGTA----------------------GPI 1032

Query: 186  GAGQSFNSQFLQHGGPRGPSVPAG----------MNPTGIGGVMGPSGLSPLAMNPTRAA 235
            G             GP+GP  PAG            P G  GV GP GL P    P  + 
Sbjct: 1033 GLPG--------RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL-PGPAGPAGSP 1083

Query: 236  GM--------TPLYAGQR--LPQHGYPGPPQAQ-PLPRQGVKRTYSEVYPGQQYLQGGQY 284
            G          P   G +    ++G PGPP  Q P+   G+     E  P  Q    GQ 
Sbjct: 1084 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK 1143

Query: 285  APSTAQFAPSPGQPPAPS--PSYPGHRLPLQQGMTQSLSVPGPTG 327
                A+  P P  P      P  PG +   + G    +  PGP G
Sbjct: 1144 GDEGARGFPGPPGPIGLQGLPGPPGEK--GENGDVGPMGPPGPPG 1186



 Score = 50.4 bits (119), Expect = 7e-06
 Identities = 86/320 (26%), Positives = 107/320 (33%), Gaps = 49/320 (15%)

Query: 57  LGNPMGPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGG-ANKG----------- 102
           L  P GP G P   G    PG+ G       P  +    F  GG  +KG           
Sbjct: 419 LQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 478

Query: 103 -YVQQGVYSRGGYPGAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAAT 159
             +QQ   +  G PG  G T   G  GGPG  G    +  P     +             
Sbjct: 479 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 538

Query: 160 ATATATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAG--------- 209
                 A        +       G  G  G   +       GP+GP  P G         
Sbjct: 539 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 598

Query: 210 -MNPTGIGGVMGPSGL-----SPLAMNPTRAAGMT--PLYAGQRLPQHGYPGPPQAQPLP 261
            + P G+ G  GP GL     +P A      AG+   P   G   PQ G PGPP  Q  P
Sbjct: 599 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNP 657

Query: 262 -RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGH-RLPLQQGMTQS 319
             QG+      + P  +  +G Q  P  A      G P A  P  PGH     Q G   +
Sbjct: 658 GPQGLPGPQGPIGPPGE--KGPQGKPGLA------GLPGADGP--PGHPGKEGQSGEKGA 707

Query: 320 LSVPGPTG-LHYKPTRSIPG 338
           L  PGP G + Y   R + G
Sbjct: 708 LGPPGPQGPIGYPGPRGVKG 727



 Score = 48.5 bits (114), Expect = 3e-05
 Identities = 87/322 (27%), Positives = 107/322 (33%), Gaps = 67/322 (20%)

Query: 60   PMGPAG--SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
            P GP G   P+G     G AG    L  P   G              +QG     G+PG 
Sbjct: 773  PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG-----------RQGPKGSTGFPGF 821

Query: 118  PGFTTGYAGGPGGLGLPSHAAR--PSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
            PG   G  G  G  G P    +  P+       A           T+          E+ 
Sbjct: 822  PG-ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 880

Query: 176  SQELSQYGAMG-------AGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPL 227
             Q     G +G        G         H G RG +   G   P G GGV+GP G    
Sbjct: 881  PQ--GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG---- 934

Query: 228  AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP----RQGVKRTYS------------- 270
               PT   G  P+  G+R    G PGPP  Q LP    ++G K                 
Sbjct: 935  ---PTGETG--PI--GER-GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGL 986

Query: 271  EVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHY 330
              +PG++ L G Q AP   +    P  PP P  S PG R         S    GP GL  
Sbjct: 987  RGFPGERGLPGAQGAPG-LKGGEGPQGPPGPVGS-PGER--------GSAGTAGPIGLPG 1036

Query: 331  KPTRSIPGYPSSP--LPGNPTP 350
            +P    P  P+     PG   P
Sbjct: 1037 RPGPQGPPGPAGEKGAPGEKGP 1058



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 89/345 (25%), Positives = 113/345 (32%), Gaps = 79/345 (22%)

Query: 60  PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEG----GANKGYVQQGVYSRGGYP 115
           P GP G P G    PG  GG      P   G + F +G      +KG+  +G     G P
Sbjct: 530 PPGPTGKP-GKRGRPGADGGRGMPGEPGAKGDRGF-DGLPGLPGDKGH--RGERGPQGPP 585

Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
           G PG     G  G  G  GLP  A               +     T  A     +A +  
Sbjct: 586 GPPGDDGMRGEDGEIGPRGLPGEAG-----------PRGLLGPRGTPGAPGQPGMAGVDG 634

Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
               +    G MG  Q       Q G P    +P    P G  G  GP G   LA  P  
Sbjct: 635 PPGPK----GNMGP-QGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLP-- 687

Query: 234 AAGMTPLYAGQ--RLPQHGYPGPPQAQ-----PLPR--------QGVKRTYSEV------ 272
            A   P + G+  +  + G  GPP  Q     P PR        +G+K +  E       
Sbjct: 688 GADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 747

Query: 273 -YPGQQYLQG-----------GQYAPSTAQFAPSPGQPPAPS--------------PSYP 306
            + G   L+G           G+  P   +    P   P PS              P YP
Sbjct: 748 GFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 807

Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPP 351
           G + P  +G T     PG  G   K  R + G P       PT P
Sbjct: 808 GRQGP--KGSTGFPGFPGANG--EKGARGVAGKPGPRGQRGPTGP 848



 Score = 38.9 bits (89), Expect = 0.022
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 775 LPSQMAPAGHLDPTHNPGTPGL-HTSNLGAPPGPQLH---HSNP-PPASRQSLGQASL-G 828
           LP +  P G L P   PG PG    + +  PPGP+ +      P PP  + + G   L G
Sbjct: 605 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 664

Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEP 856
           P G +      G  G P ++G   A  P
Sbjct: 665 PQGPIGPPGEKGPQGKPGLAGLPGADGP 692



 Score = 37.7 bits (86), Expect = 0.048
 Identities = 54/214 (25%), Positives = 61/214 (28%), Gaps = 47/214 (21%)

Query: 698  GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP---- 753
            GP   P  P  PP  P P+   G G      G   +  PP     P+     PGPP    
Sbjct: 1270 GPVGFPGDP-GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG----PSGEAGPPGPPGKRG 1324

Query: 754  ---PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH------------- 797
                   +          E      P +  P G   P   PG  GL              
Sbjct: 1325 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1384

Query: 798  TSNLGAPPGPQLHHSNP----PPASRQSLGQASL-------GPTGELAFSPATGVMGPPS 846
             +    PPGP      P     P S+   G   L       G  GE       G  G P 
Sbjct: 1385 AAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPG 1444

Query: 847  MSGAGEAPEPALDLLPELTNPDELLSYLGPPDLP 880
              G G  P PA  L P            GPP LP
Sbjct: 1445 AKGDGGIPGPAGPLGPP-----------GPPGLP 1467



 Score = 35.4 bits (80), Expect = 0.24
 Identities = 44/175 (25%), Positives = 60/175 (34%), Gaps = 47/175 (26%)

Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE 769
           P VPA +D     +S  G G + E      P+         GPP  +  + I        
Sbjct: 364 PGVPAETDITE--TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI-------- 413

Query: 770 KSTACLPSQMAPAGHLDPTHNPGTPGLH----------TSNLGAPPGPQL---------H 810
                    M P G   PT  PG PG               L  PPG  L          
Sbjct: 414 ---------MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG 464

Query: 811 HSNPPPASRQSLGQASL--------GPTGELAFSPATGVMGPPSMSGA-GEAPEP 856
              P  +++++  QA L        GP G +  +   G +G P  SGA GE+ +P
Sbjct: 465 SKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 519



 Score = 35.4 bits (80), Expect = 0.24
 Identities = 48/165 (29%), Positives = 54/165 (32%), Gaps = 48/165 (29%)

Query: 699  PGAA----PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPGP 752
            PGAA    P  P+ PP +P     PG       PG      PP             T G 
Sbjct: 1383 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1442

Query: 753  PPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHS 812
            P       IP                  PAG L P   PG PGL        PGPQ    
Sbjct: 1443 PGAKGDGGIPG-----------------PAGPLGP---PGPPGL--------PGPQGPKG 1474

Query: 813  NPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEP 856
            N          + S GP G+   S   G+ GPP   G  GE  +P
Sbjct: 1475 N----------KGSTGPAGQKGDS---GLPGPPGSPGPPGEVIQP 1506



 Score = 35.0 bits (79), Expect = 0.31
 Identities = 76/305 (24%), Positives = 92/305 (30%), Gaps = 40/305 (13%)

Query: 60   PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQA----FAEGGANKGYVQQGVYSRGGYP 115
            P GP G P GS    G AG +  +  P   G Q       E GA      QG   R G  
Sbjct: 1010 PQGPPG-PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1068

Query: 116  GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
            G  G     G AG PG  G       P    ++                   A   A  +
Sbjct: 1069 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGD 1128

Query: 174  KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
             +     Q G  G          Q G       P    P G+ G+ GP G          
Sbjct: 1129 GEPGPRGQQGMFG----------QKGDEGARGFPGPPGPIGLQGLPGPPG------EKGE 1172

Query: 234  AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYS-EVYPGQQYLQGGQYAPSTAQFA 292
               + P+         G PGPP   P   QG       +  PG     GG         A
Sbjct: 1173 NGDVGPM---------GPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEA 1221

Query: 293  PSPGQPPAPSPSYP-GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPL--PGNPT 349
             +PG P       P G R   ++G        GP G    P    P     P+  PG+P 
Sbjct: 1222 GNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG 1279

Query: 350  PPMTP 354
            PP  P
Sbjct: 1280 PPGEP 1284



 Score = 34.3 bits (77), Expect = 0.53
 Identities = 45/172 (26%), Positives = 54/172 (31%), Gaps = 31/172 (18%)

Query: 694  IAALGPGA--APFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPG 751
            +  +GP     P  P  P     P   PG   S  G G   E      P  P   E   G
Sbjct: 1176 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP--GEAGVG 1233

Query: 752  PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP--PGPQL 809
             P               EK  A  P    P G   P  + G  G +   +G P  PGP  
Sbjct: 1234 GPKGE----------RGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPP- 1281

Query: 810  HHSNPPPASRQSLG-----------QASLGPTGELAFSPATGVMGPPSMSGA 850
                P PA +  +G               GP+GE       G  GPP  +GA
Sbjct: 1282 --GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1331



 Score = 32.3 bits (72), Expect = 2.0
 Identities = 41/148 (27%), Positives = 52/148 (35%), Gaps = 25/148 (16%)

Query: 706  PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSS 764
            P  PP +  P   PG       PG   +              F PGPP PI  Q  +P  
Sbjct: 1109 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGF-PGPPGPIGLQG-LPGP 1166

Query: 765  LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLG 823
                       P +    G + P   PG PG        P GPQ  + ++ P     S+G
Sbjct: 1167 -----------PGEKGENGDVGPMGPPGPPG--------PRGPQGPNGADGPQGPPGSVG 1207

Query: 824  QASLGPTGELAFSPATGVMGPPSMSGAG 851
              S+G  GE       G  GPP  +G G
Sbjct: 1208 --SVGGVGEKGEPGEAGNPGPPGEAGVG 1233



 Score = 32.0 bits (71), Expect = 2.6
 Identities = 56/217 (25%), Positives = 74/217 (34%), Gaps = 48/217 (22%)

Query: 179 LSQYGAMGA-GQSFNSQFLQHG----GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
           ++ +GA G  GQ      ++ G    GP GP+ PAG        +MGP GL      PT 
Sbjct: 377 INGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAG--------IMGPPGL----QGPTG 424

Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
             G      G R P  G PG P A  LP            PG   +   +Y    +    
Sbjct: 425 PPG----DPGDRGPP-GRPGLPGADGLPGP----------PGTMLMLPFRYGGDGS---- 465

Query: 294 SPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMT 353
              + P  S      +  LQQ        PGP GL  +P          P+ G  +    
Sbjct: 466 ---KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP---------GPVGGPGSSGAK 513

Query: 354 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSG 390
             S  P     + V+ P  P  KP       +  G G
Sbjct: 514 GESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRG 550


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 100/374 (26%), Positives = 126/374 (33%), Gaps = 57/374 (15%)

Query: 4    MNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGP 63
            + PM P  PP P G              A  P G    V +V GVG   +    GNP  P
Sbjct: 1215 VGPMGPPGPPGPRGPQG--------PNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1266

Query: 64   ----AGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
                 G P G     G AG   A   P   G         N G V  G     G PG PG
Sbjct: 1267 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPG 1324

Query: 120  --FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
                 G  G  G  G P     P          +  A              A  + +Q +
Sbjct: 1325 PAGQDGVGGDKGEDGDPGQPGPP--------GPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1376

Query: 178  ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGM-NPTGIGGVMGPSGLSPLAMNPTRAAG 236
            + ++  A   G    +      GP GP  PAG   P G+ G+ GP G   L         
Sbjct: 1377 KGAKGEAGAEGPPGKT------GPVGPQGPAGKPGPEGLRGIPGPVGEQGL--------- 1421

Query: 237  MTPLYAGQRLP--QHGYPGPPQAQPLPRQGVKRTYSEVY-----PGQQYLQGGQYAPSTA 289
              P  AGQ  P    G PG P  +  P    ++ +  +      PG+Q  +G +  P T 
Sbjct: 1422 --PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQ 1479

Query: 290  QFAPSPGQPPAPSPSYP-----GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP- 343
                + G    P P+ P        LP  QG   +    GP G   K    +PG P SP 
Sbjct: 1480 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAG--QKGDSGLPGPPGSPG 1537

Query: 344  LPGNPTPPMTPSSS 357
             PG    P+   SS
Sbjct: 1538 PPGEVIQPLPILSS 1551



 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 92/345 (26%), Positives = 110/345 (31%), Gaps = 81/345 (23%)

Query: 6    PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
            P K  LP  P   G   +      Q  T P G   VV      G        G+P GP G
Sbjct: 939  PGKDGLPGHPGQRGETGF------QGKTGPPGPGGVVGPQGPTGETGPIGERGHP-GPPG 991

Query: 66   SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYA 125
             P G   +PG AG   A   P   G Q  +      G   +G     G PGA G   G  
Sbjct: 992  PP-GEQGLPGAAGKEGAKGDP---GPQGISGKDGPAGL--RGFPGERGLPGAQG-APGLK 1044

Query: 126  GGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAM 185
            GG G  G P     P               +A TA                      G +
Sbjct: 1045 GGEGPQGPPGPVGSPGE-----------RGSAGTA----------------------GPI 1071

Query: 186  GAGQSFNSQFLQHGGPRGPSVPAG----------MNPTGIGGVMGPSGLSPLAMNPTRAA 235
            G             GP+GP  PAG            P G  GV GP GL P    P  + 
Sbjct: 1072 GLPG--------RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL-PGPAGPAGSP 1122

Query: 236  GM--------TPLYAGQR--LPQHGYPGPPQAQ-PLPRQGVKRTYSEVYPGQQYLQGGQY 284
            G          P   G +    ++G PGPP  Q P+   G+     E  P  Q    GQ 
Sbjct: 1123 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK 1182

Query: 285  APSTAQFAPSPGQPPAPS--PSYPGHRLPLQQGMTQSLSVPGPTG 327
                A+  P P  P      P  PG +   + G    +  PGP G
Sbjct: 1183 GDEGARGFPGPPGPIGLQGLPGPPGEK--GENGDVGPMGPPGPPG 1225



 Score = 50.4 bits (119), Expect = 7e-06
 Identities = 86/320 (26%), Positives = 107/320 (33%), Gaps = 49/320 (15%)

Query: 57  LGNPMGPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGG-ANKG----------- 102
           L  P GP G P   G    PG+ G       P  +    F  GG  +KG           
Sbjct: 458 LQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 517

Query: 103 -YVQQGVYSRGGYPGAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAAT 159
             +QQ   +  G PG  G T   G  GGPG  G    +  P     +             
Sbjct: 518 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 577

Query: 160 ATATATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAG--------- 209
                 A        +       G  G  G   +       GP+GP  P G         
Sbjct: 578 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 637

Query: 210 -MNPTGIGGVMGPSGL-----SPLAMNPTRAAGMT--PLYAGQRLPQHGYPGPPQAQPLP 261
            + P G+ G  GP GL     +P A      AG+   P   G   PQ G PGPP  Q  P
Sbjct: 638 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNP 696

Query: 262 -RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGH-RLPLQQGMTQS 319
             QG+      + P  +  +G Q  P  A      G P A  P  PGH     Q G   +
Sbjct: 697 GPQGLPGPQGPIGPPGE--KGPQGKPGLA------GLPGADGP--PGHPGKEGQSGEKGA 746

Query: 320 LSVPGPTG-LHYKPTRSIPG 338
           L  PGP G + Y   R + G
Sbjct: 747 LGPPGPQGPIGYPGPRGVKG 766



 Score = 48.5 bits (114), Expect = 3e-05
 Identities = 87/322 (27%), Positives = 107/322 (33%), Gaps = 67/322 (20%)

Query: 60   PMGPAG--SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
            P GP G   P+G     G AG    L  P   G              +QG     G+PG 
Sbjct: 812  PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG-----------RQGPKGSTGFPGF 860

Query: 118  PGFTTGYAGGPGGLGLPSHAAR--PSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
            PG   G  G  G  G P    +  P+       A           T+          E+ 
Sbjct: 861  PG-ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 919

Query: 176  SQELSQYGAMG-------AGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPL 227
             Q     G +G        G         H G RG +   G   P G GGV+GP G    
Sbjct: 920  PQ--GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG---- 973

Query: 228  AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP----RQGVKRTYS------------- 270
               PT   G  P+  G+R    G PGPP  Q LP    ++G K                 
Sbjct: 974  ---PTGETG--PI--GER-GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGL 1025

Query: 271  EVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHY 330
              +PG++ L G Q AP   +    P  PP P  S PG R         S    GP GL  
Sbjct: 1026 RGFPGERGLPGAQGAPG-LKGGEGPQGPPGPVGS-PGER--------GSAGTAGPIGLPG 1075

Query: 331  KPTRSIPGYPSSP--LPGNPTP 350
            +P    P  P+     PG   P
Sbjct: 1076 RPGPQGPPGPAGEKGAPGEKGP 1097



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 89/345 (25%), Positives = 113/345 (32%), Gaps = 79/345 (22%)

Query: 60  PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEG----GANKGYVQQGVYSRGGYP 115
           P GP G P G    PG  GG      P   G + F +G      +KG+  +G     G P
Sbjct: 569 PPGPTGKP-GKRGRPGADGGRGMPGEPGAKGDRGF-DGLPGLPGDKGH--RGERGPQGPP 624

Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
           G PG     G  G  G  GLP  A               +     T  A     +A +  
Sbjct: 625 GPPGDDGMRGEDGEIGPRGLPGEAG-----------PRGLLGPRGTPGAPGQPGMAGVDG 673

Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
               +    G MG  Q       Q G P    +P    P G  G  GP G   LA  P  
Sbjct: 674 PPGPK----GNMGP-QGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLP-- 726

Query: 234 AAGMTPLYAGQ--RLPQHGYPGPPQAQ-----PLPR--------QGVKRTYSEV------ 272
            A   P + G+  +  + G  GPP  Q     P PR        +G+K +  E       
Sbjct: 727 GADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 786

Query: 273 -YPGQQYLQG-----------GQYAPSTAQFAPSPGQPPAPS--------------PSYP 306
            + G   L+G           G+  P   +    P   P PS              P YP
Sbjct: 787 GFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 846

Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPP 351
           G + P  +G T     PG  G   K  R + G P       PT P
Sbjct: 847 GRQGP--KGSTGFPGFPGANG--EKGARGVAGKPGPRGQRGPTGP 887



 Score = 38.9 bits (89), Expect = 0.022
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 775 LPSQMAPAGHLDPTHNPGTPGL-HTSNLGAPPGPQLH---HSNP-PPASRQSLGQASL-G 828
           LP +  P G L P   PG PG    + +  PPGP+ +      P PP  + + G   L G
Sbjct: 644 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 703

Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEP 856
           P G +      G  G P ++G   A  P
Sbjct: 704 PQGPIGPPGEKGPQGKPGLAGLPGADGP 731



 Score = 37.7 bits (86), Expect = 0.048
 Identities = 54/214 (25%), Positives = 61/214 (28%), Gaps = 47/214 (21%)

Query: 698  GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP---- 753
            GP   P  P  PP  P P+   G G      G   +  PP     P+     PGPP    
Sbjct: 1309 GPVGFPGDP-GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG----PSGEAGPPGPPGKRG 1363

Query: 754  ---PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH------------- 797
                   +          E      P +  P G   P   PG  GL              
Sbjct: 1364 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1423

Query: 798  TSNLGAPPGPQLHHSNP----PPASRQSLGQASL-------GPTGELAFSPATGVMGPPS 846
             +    PPGP      P     P S+   G   L       G  GE       G  G P 
Sbjct: 1424 AAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPG 1483

Query: 847  MSGAGEAPEPALDLLPELTNPDELLSYLGPPDLP 880
              G G  P PA  L P            GPP LP
Sbjct: 1484 AKGDGGIPGPAGPLGPP-----------GPPGLP 1506



 Score = 35.4 bits (80), Expect = 0.24
 Identities = 44/175 (25%), Positives = 60/175 (34%), Gaps = 47/175 (26%)

Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE 769
           P VPA +D     +S  G G + E      P+         GPP  +  + I        
Sbjct: 403 PGVPAETDITE--TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI-------- 452

Query: 770 KSTACLPSQMAPAGHLDPTHNPGTPGLH----------TSNLGAPPGPQL---------H 810
                    M P G   PT  PG PG               L  PPG  L          
Sbjct: 453 ---------MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG 503

Query: 811 HSNPPPASRQSLGQASL--------GPTGELAFSPATGVMGPPSMSGA-GEAPEP 856
              P  +++++  QA L        GP G +  +   G +G P  SGA GE+ +P
Sbjct: 504 SKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 558



 Score = 35.4 bits (80), Expect = 0.24
 Identities = 48/165 (29%), Positives = 54/165 (32%), Gaps = 48/165 (29%)

Query: 699  PGAA----PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPGP 752
            PGAA    P  P+ PP +P     PG       PG      PP             T G 
Sbjct: 1422 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1481

Query: 753  PPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHS 812
            P       IP                  PAG L P   PG PGL        PGPQ    
Sbjct: 1482 PGAKGDGGIPG-----------------PAGPLGP---PGPPGL--------PGPQGPKG 1513

Query: 813  NPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEP 856
            N          + S GP G+   S   G+ GPP   G  GE  +P
Sbjct: 1514 N----------KGSTGPAGQKGDS---GLPGPPGSPGPPGEVIQP 1545



 Score = 35.0 bits (79), Expect = 0.31
 Identities = 76/305 (24%), Positives = 92/305 (30%), Gaps = 40/305 (13%)

Query: 60   PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQA----FAEGGANKGYVQQGVYSRGGYP 115
            P GP G P GS    G AG +  +  P   G Q       E GA      QG   R G  
Sbjct: 1049 PQGPPG-PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1107

Query: 116  GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
            G  G     G AG PG  G       P    ++                   A   A  +
Sbjct: 1108 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGD 1167

Query: 174  KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
             +     Q G  G          Q G       P    P G+ G+ GP G          
Sbjct: 1168 GEPGPRGQQGMFG----------QKGDEGARGFPGPPGPIGLQGLPGPPG------EKGE 1211

Query: 234  AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYS-EVYPGQQYLQGGQYAPSTAQFA 292
               + P+         G PGPP   P   QG       +  PG     GG         A
Sbjct: 1212 NGDVGPM---------GPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEA 1260

Query: 293  PSPGQPPAPSPSYP-GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPL--PGNPT 349
             +PG P       P G R   ++G        GP G    P    P     P+  PG+P 
Sbjct: 1261 GNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG 1318

Query: 350  PPMTP 354
            PP  P
Sbjct: 1319 PPGEP 1323



 Score = 34.3 bits (77), Expect = 0.53
 Identities = 45/172 (26%), Positives = 54/172 (31%), Gaps = 31/172 (18%)

Query: 694  IAALGPGA--APFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPG 751
            +  +GP     P  P  P     P   PG   S  G G   E      P  P   E   G
Sbjct: 1215 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP--GEAGVG 1272

Query: 752  PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP--PGPQL 809
             P               EK  A  P    P G   P  + G  G +   +G P  PGP  
Sbjct: 1273 GPKGE----------RGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPP- 1320

Query: 810  HHSNPPPASRQSLG-----------QASLGPTGELAFSPATGVMGPPSMSGA 850
                P PA +  +G               GP+GE       G  GPP  +GA
Sbjct: 1321 --GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1370



 Score = 32.3 bits (72), Expect = 2.0
 Identities = 41/148 (27%), Positives = 52/148 (35%), Gaps = 25/148 (16%)

Query: 706  PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSS 764
            P  PP +  P   PG       PG   +              F PGPP PI  Q  +P  
Sbjct: 1148 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGF-PGPPGPIGLQG-LPGP 1205

Query: 765  LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLG 823
                       P +    G + P   PG PG        P GPQ  + ++ P     S+G
Sbjct: 1206 -----------PGEKGENGDVGPMGPPGPPG--------PRGPQGPNGADGPQGPPGSVG 1246

Query: 824  QASLGPTGELAFSPATGVMGPPSMSGAG 851
              S+G  GE       G  GPP  +G G
Sbjct: 1247 --SVGGVGEKGEPGEAGNPGPPGEAGVG 1272



 Score = 32.0 bits (71), Expect = 2.6
 Identities = 56/217 (25%), Positives = 74/217 (34%), Gaps = 48/217 (22%)

Query: 179 LSQYGAMGA-GQSFNSQFLQHG----GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
           ++ +GA G  GQ      ++ G    GP GP+ PAG        +MGP GL      PT 
Sbjct: 416 INGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAG--------IMGPPGL----QGPTG 463

Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
             G      G R P  G PG P A  LP            PG   +   +Y    +    
Sbjct: 464 PPG----DPGDRGPP-GRPGLPGADGLPGP----------PGTMLMLPFRYGGDGS---- 504

Query: 294 SPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMT 353
              + P  S      +  LQQ        PGP GL  +P          P+ G  +    
Sbjct: 505 ---KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP---------GPVGGPGSSGAK 552

Query: 354 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSG 390
             S  P     + V+ P  P  KP       +  G G
Sbjct: 553 GESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRG 589


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 63.2 bits (152), Expect = 1e-09
 Identities = 95/361 (26%), Positives = 118/361 (32%), Gaps = 65/361 (18%)

Query: 5   NPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA 64
           NP     P A   +G+      P    A  P+G                 Q  G P GP 
Sbjct: 387 NPGADGQPGAKGANGAPGIAGAPGFPGARGPSGP----------------QGPGGPPGPK 430

Query: 65  GSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGY 124
           G+ SG    PG  G + A   P  +G Q        +G  ++G     G  G PG   G 
Sbjct: 431 GN-SGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEG--KRGARGEPGPTGLPG-PPGE 486

Query: 125 AGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGA 184
            GGPG  G P              A     A    +   A    +  +  +  E    GA
Sbjct: 487 RGGPGSRGFPG---------ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 537

Query: 185 MGAGQSFNSQFL-----------QHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
            G   S  S              Q G P  P  P      G+ G  GP G          
Sbjct: 538 KGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKG---------- 587

Query: 234 AAGMTPLYAGQRLPQHGYPGPPQA-QPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFA 292
           AAG  P  AG+R    G PGPP A  P  + G         P     + G+  P     A
Sbjct: 588 AAG-EPGKAGER----GVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGP-----A 637

Query: 293 PSPGQPPAPSPSYPGHRL--PLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTP 350
            SPG    P P+ P      P +QG+   L  PGP+G   +  R  PG      P  P  
Sbjct: 638 GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGA--RGERGFPGERGVQGPPGPAG 695

Query: 351 P 351
           P
Sbjct: 696 P 696



 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 97/359 (27%), Positives = 119/359 (33%), Gaps = 67/359 (18%)

Query: 9   PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP--MGPAGS 66
           P  P AP   G       P +  A+ P G           G+  ++   G P   GP G 
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPG- 248

Query: 67  PSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAG 126
           P G+  +PG AG       P   G + F+     KG    G     G PG+PG   G  G
Sbjct: 249 PQGARGLPGTAG------LPGMKGHRGFSGLDGAKG--DAGPAGPKGEPGSPG-ENGAPG 299

Query: 127 GPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA-TATATVAALQEKQSQELSQYGAM 185
             G  GLP    RP       A     A  AA     T  A                GA+
Sbjct: 300 QMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP----------GAV 349

Query: 186 GAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQR 245
           GA      Q     GPRG   P G+   G  G  GP+G +  A NP              
Sbjct: 350 GAKGEAGPQ-----GPRGSEGPQGVR--GEPGPPGPAGAAGPAGNPGA------------ 390

Query: 246 LPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSY 305
               G PG   A   P  G+       +PG +   G Q           PG PP P  + 
Sbjct: 391 ---DGQPGAKGANGAP--GIAGAPG--FPGARGPSGPQ----------GPGGPPGPKGNS 433

Query: 306 PGHRLPLQQGMTQSLSVPGPTGLHYKP-------TRSIPGYPS-SPLPGNPTPPMTPSS 356
                P  +G T +   PGP G+   P        R   G P  + LPG P     P S
Sbjct: 434 GEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS 492



 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 98/353 (27%), Positives = 114/353 (32%), Gaps = 48/353 (13%)

Query: 13  PAPHG----DGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPS 68
           P P G     G      VP    A  PAG           G A  +   G   GPAGSP 
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGE-QGPAGSPG 641

Query: 69  -----GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYV-QQGVYSRGGYPGAPGFTT 122
                G +  PG AG       P  LG    +     +G+  ++GV      P  P    
Sbjct: 642 FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQG----PPGPAGPR 697

Query: 123 GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQY 182
           G  G PG  G    A  P    +Q A           A        A L   +       
Sbjct: 698 GANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGA--------AGLPGPKGDR-GDA 748

Query: 183 GAMGAGQSFNSQFLQH-GGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLY 241
           G  GA  S     ++   GP GP  PAG    G  G  GPSG +     PT A G     
Sbjct: 749 GPKGADGSPGKDGVRGLTGPIGPPGPAGA--PGDKGESGPSGPA----GPTGARGAP--- 799

Query: 242 AGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAP 301
            G R    G PGPP     P        ++  PG +   G   A   A   P P  P  P
Sbjct: 800 -GDR----GEPGPPG----PAGFAGPPGADGQPGAKGEPGDAGAKGDAG-PPGPAGPAGP 849

Query: 302 SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTP 354
                    P  +G   S   PG TG      R  P  PS    GN  PP  P
Sbjct: 850 PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS----GNAGPPGPP 898



 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 103/398 (25%), Positives = 128/398 (32%), Gaps = 61/398 (15%)

Query: 6   PMKPALPPAPHGD-GSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA 64
           P  P  PP P G+ G            A    G + V       G   +    G P GP 
Sbjct: 420 PQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP-GPT 478

Query: 65  G--SPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGAN-KGYV-QQGVYSRGGYPGAP 118
           G   P G    PG  G  G+  +  P+    +  + G A  KG   + G     G PGA 
Sbjct: 479 GLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAK 538

Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
           G T G  G PG  G          D          A   A          AA +  ++ E
Sbjct: 539 GLT-GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGE 597

Query: 179 LSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAG-------MNPTGIGGVMGPSGLSPLAMN 230
               G  GA G +         GP GP+ PAG           G  G+ GP+G    A  
Sbjct: 598 RGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGK 657

Query: 231 PTRAAGMTPLYA----GQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAP 286
           P        L A    G R  + G+PG    Q  P     R  +   PG    +G   AP
Sbjct: 658 PGEQGVPGDLGAPGPSGAR-GERGFPGERGVQGPPGPAGPRGANGA-PGNDGAKGDAGAP 715

Query: 287 ST--AQFAPS----PGQP-----PAP--------------SPSYPGHRLPLQQGMTQSLS 321
               +Q AP     PG+      P P              SP   G R     G+T  + 
Sbjct: 716 GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVR-----GLTGPIG 770

Query: 322 VPGPTGLHYKPTRSIPGYPSSPL--------PGNPTPP 351
            PGP G       S P  P+ P          G P PP
Sbjct: 771 PPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPP 808



 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 81/305 (26%), Positives = 98/305 (32%), Gaps = 42/305 (13%)

Query: 9    PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP--MGPAG- 65
            P  PP P G+             A  PAG+     T    G A Q  V+G P   G  G 
Sbjct: 924  PPGPPGPAGEKG--------SPGADGPAGAPG---TPGPQGIAGQRGVVGLPGQRGERGF 972

Query: 66   ----SPSGSSMMPGVAGGSSALTSPQCLGQQAFA----EGGANKGYVQQGVYSRGGYPGA 117
                 PSG     G +G S     P  +G    A    E G       +G   R G PGA
Sbjct: 973  PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGA 1032

Query: 118  PGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
             G    TG AG PG  G P                    A  A       A   A  +  
Sbjct: 1033 KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP 1092

Query: 176  SQELSQYGAMG-AGQSFNSQFLQHGGPRGP-SVPAGMNPTGIGGVMGPSGLS-------- 225
              +  + G  G  G   +  F    GP GP   P    P+G  G  GP G          
Sbjct: 1093 RGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGK 1152

Query: 226  ------PLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYL 279
                  P  + P    G T   AG   P  G PGPP     P  G   ++    P ++  
Sbjct: 1153 DGLNGLPGPIGPPGPRGRTG-DAGPVGPP-GPPGPPGPPGPPSAGFDFSFLPQPPQEKAH 1210

Query: 280  QGGQY 284
             GG+Y
Sbjct: 1211 DGGRY 1215



 Score = 40.0 bits (92), Expect = 0.010
 Identities = 50/175 (28%), Positives = 59/175 (33%), Gaps = 23/175 (13%)

Query: 706 PLQPPS-VPAPSDYPGQGSSFLGPGTFPESFPPTT--PSTPTLAEFTPGPPPISYQSDIP 762
           P+ PP    AP D    G S     T     P     P  P  A F  GPP    Q    
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFA-GPPGADGQPGAK 826

Query: 763 SSLLTS-EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGA----------------PP 805
                +  K  A  P    PAG   P  N G PG   +   A                PP
Sbjct: 827 GEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPP 886

Query: 806 GPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEPALD 859
           GP   ++ PP     +  +   GP GE   +   G +GPP   G AGE   P  D
Sbjct: 887 GPS-GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGAD 940



 Score = 38.9 bits (89), Expect = 0.022
 Identities = 49/186 (26%), Positives = 61/186 (32%), Gaps = 26/186 (13%)

Query: 709 PPSVPAPSDYPGQGSSFLGPGTFPESFPPT------TPSTPTLAEFTPGPP----PISYQ 758
           PP  P P   PG G +F    ++      T       P  P+     PGPP    P  +Q
Sbjct: 143 PPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQ 202

Query: 759 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH--TSNLGAPPGPQLHHSNPPP 816
              P             P +   +G + P   PG PG +      G P  P       P 
Sbjct: 203 GP-PGE-----------PGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQ 250

Query: 817 ASRQSLGQASL-GPTGELAFSPATGVMGPPSMSG-AGEAPEPALDLLPELTNPDELLSYL 874
            +R   G A L G  G   FS   G  G    +G  GE   P  +  P    P  L    
Sbjct: 251 GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGER 310

Query: 875 GPPDLP 880
           G P  P
Sbjct: 311 GRPGAP 316



 Score = 37.7 bits (86), Expect = 0.048
 Identities = 47/168 (27%), Positives = 56/168 (33%), Gaps = 56/168 (33%)

Query: 201 PRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPL 260
           P G   P     TG+ G  G +G                          G  GP  A P 
Sbjct: 96  PDGSESPTDQETTGVEGPKGDTG------------------------PRGPRGP--AGPP 129

Query: 261 PRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLP-----LQQG 315
            R G+        PGQ  L G           P P  PP P P   G+  P       + 
Sbjct: 130 GRDGI--------PGQPGLPG----------PPGPPGPPGP-PGLGGNFAPQLSYGYDEK 170

Query: 316 MTQSLSVPGPTGLHYKPTRSIPGYPSSPLP----GNPTPPMTPSSSVP 359
            T  +SVPGP G      R +PG P +P P    G P  P  P +S P
Sbjct: 171 STGGISVPGPMG--PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGP 216



 Score = 37.7 bits (86), Expect = 0.048
 Identities = 52/170 (30%), Positives = 56/170 (32%), Gaps = 55/170 (32%)

Query: 200 GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGY-------- 251
           GPRGP  PAG  P G  G+ G  GL P    P    G  P   G   PQ  Y        
Sbjct: 118 GPRGPRGPAG--PPGRDGIPGQPGL-PGPPGPPGPPG-PPGLGGNFAPQLSYGYDEKSTG 173

Query: 252 ----PGP-----PQAQPLPRQGVKRTYSEVYPGQQYLQG--GQYAPSTAQFAPSPGQPPA 300
               PGP     P+  P P            PG Q  QG  G+     A     P  PP 
Sbjct: 174 GISVPGPMGPSGPRGLPGPPGA---------PGPQGFQGPPGEPGEPGASGPMGPRGPPG 224

Query: 301 P-----------SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKP-TRSIPG 338
           P            P  PG R P           PGP G    P T  +PG
Sbjct: 225 PPGKNGDDGEAGKPGRPGERGP-----------PGPQGARGLPGTAGLPG 263



 Score = 37.4 bits (85), Expect = 0.063
 Identities = 46/159 (28%), Positives = 58/159 (36%), Gaps = 29/159 (18%)

Query: 699 PGAA-PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISY 757
           PGA+ P  P  PP  P  +   G+      PG   E  PP     P  A   PG      
Sbjct: 211 PGASGPMGPRGPPGPPGKNGDDGEAGK---PGRPGERGPPG----PQGARGLPGT----- 258

Query: 758 QSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPP--GPQLHHSNPP 815
            + +P   +   +  + L      AG   P   PG+PG +    GAP   GP+       
Sbjct: 259 -AGLPG--MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN----GAPGQMGPR-----GL 306

Query: 816 PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAP 854
           P  R   G    GP G      ATG  GPP  +G    P
Sbjct: 307 PGERGRPGAP--GPAGARGNDGATGAAGPPGPTGPAGPP 343



 Score = 36.6 bits (83), Expect = 0.11
 Identities = 43/161 (26%), Positives = 53/161 (32%), Gaps = 20/161 (12%)

Query: 706  PLQPPSVPAPSDYPGQGSSFLGPGTFPESFP--PTTPSTPTLAEFTPGPPPISYQSDIPS 763
            P  PP  P     PG        G   E+ P  P  P  P  A    GP     Q     
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGP-----QGPRGD 1095

Query: 764  SLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH-TSNLGAPPGPQLHHSNPPPASRQSL 822
               T E+    +      +G   P   PG+PG    S    P GP+      PP S  + 
Sbjct: 1096 KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR-----GPPGSAGAP 1150

Query: 823  GQASL-------GPTGELAFSPATGVMGPPSMSGAGEAPEP 856
            G+  L       GP G    +   G +GPP   G    P P
Sbjct: 1151 GKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGP 1191



 Score = 36.2 bits (82), Expect = 0.14
 Identities = 49/182 (26%), Positives = 62/182 (34%), Gaps = 26/182 (14%)

Query: 699  PGAA-------PFAPLQPPSVPAPSDYPG----QGSSFLGPGTFPESFPPTTPSTPTLAE 747
            PGAA       P     PP  P P+   G    +G +  GP   P    P  P  P   +
Sbjct: 877  PGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGET--GPAGRPGEVGPPGPPGPAGEK 934

Query: 748  FTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLD---PTHNPGTPGLH-TSNLG 802
             +PG    +     P    +  ++    LP Q    G      P+  PG  G    S   
Sbjct: 935  GSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGER 994

Query: 803  APPGPQLHH--SNPPPASRQSLGQASLGPTGELAFSPA------TGVMGPPSMSGAGEAP 854
             PPGP      + PP  S +     + G  G      A      TG  GPP   GA  AP
Sbjct: 995  GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAP 1054

Query: 855  EP 856
             P
Sbjct: 1055 GP 1056



 Score = 35.0 bits (79), Expect = 0.31
 Identities = 42/149 (28%), Positives = 51/149 (34%), Gaps = 35/149 (23%)

Query: 710  PSVPAPSDYPG-QGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTS 768
            P +P PS  PG QG S    G   E  PP     P LA    GPP  S +   P +  + 
Sbjct: 973  PGLPGPSGEPGKQGPS----GASGERGPPGPMGPPGLA----GPPGESGREGAPGAEGSP 1024

Query: 769  EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 828
             +  +  P      G   P   PG PG   +     PGP                   +G
Sbjct: 1025 GRDGS--PGAKGDRGETGPAGPPGAPGAPGA-----PGP-------------------VG 1058

Query: 829  PTGELAFSPATGVMGPPSMSGAGEAPEPA 857
            P G+      TG  GP    G   A  PA
Sbjct: 1059 PAGKSGDRGETGPAGPAGPVGPVGARGPA 1087



 Score = 33.5 bits (75), Expect = 0.91
 Identities = 55/208 (26%), Positives = 66/208 (31%), Gaps = 52/208 (25%)

Query: 701 AAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFP-ESFPPTTPSTP--------TLAEFTPG 751
           A P  P   P  P  +  PGQ    +GP   P E   P  P           T A   PG
Sbjct: 280 AGPAGPKGEPGSPGENGAPGQ----MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG 335

Query: 752 PPPISYQSDIPSSL-------------LTSEKSTACLPSQMAPAGHLDPTHNPGT---PG 795
           P   +     P ++                 +     P    PAG   P  NPG    PG
Sbjct: 336 PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPG 395

Query: 796 LHTSN-----LGA--------PPGPQLHHSNPPPASRQSLGQ----ASLGPTGELAFSPA 838
              +N      GA        P GPQ      PP  + + G+     S G TG       
Sbjct: 396 AKGANGAPGIAGAPGFPGARGPSGPQ--GPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGP 453

Query: 839 TGVMGPPSMSG----AGEAPEPALDLLP 862
            GV GPP  +G     G   EP    LP
Sbjct: 454 VGVQGPPGPAGEEGKRGARGEPGPTGLP 481



 Score = 33.5 bits (75), Expect = 0.91
 Identities = 47/162 (29%), Positives = 57/162 (35%), Gaps = 25/162 (15%)

Query: 696 ALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 755
           A GP   P A  QP +  A +  PG   +   PG FP +  P+ P  P      PGP   
Sbjct: 381 AAGPAGNPGADGQPGAKGA-NGAPGIAGA---PG-FPGARGPSGPQGPG---GPPGPKGN 432

Query: 756 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPP 815
           S +   P S     K       +  P G   P    G  G   +     PGP       P
Sbjct: 433 SGEPGAPGS-----KGDTGAKGEPGPVGVQGPPGPAGEEGKRGAR--GEPGPT--GLPGP 483

Query: 816 PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPA 857
           P  R        G  G   F  A GV GP   +G   +P PA
Sbjct: 484 PGER--------GGPGSRGFPGADGVAGPKGPAGERGSPGPA 517



 Score = 31.2 bits (69), Expect = 4.5
 Identities = 41/157 (26%), Positives = 50/157 (31%), Gaps = 28/157 (17%)

Query: 713 PAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTSEKS 771
           P  +  PG       PG+ P     T P  P   +  PGPP P   +           K 
Sbjct: 529 PGEAGLPGAKGLTGSPGS-PGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKG 587

Query: 772 TACLPSQMA------PAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQA 825
            A  P +        P G + P    G  G        PPGP        PA  +     
Sbjct: 588 AAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQ-----GPPGPA------GPAGERG---- 632

Query: 826 SLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 862
             GP G   F    G  GPP     GEA +P    +P
Sbjct: 633 EQGPAGSPGFQGLPGPAGPP-----GEAGKPGEQGVP 664


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 108/404 (26%), Positives = 140/404 (34%), Gaps = 96/404 (23%)

Query: 16  HGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSSMMPG 75
           HG  +  Y S    +SA  P      +++  G          G P   A + +GS   P 
Sbjct: 205 HGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG----------GTPGSGAAAAAGSKPPP- 253

Query: 76  VAGGSSALTSPQCLGQQAF-AEGGANKGYVQQGV----------------YSRGGYPGAP 118
            +  +SA +S     QQ F A GG        G                  S  GY G P
Sbjct: 254 -SSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYP 312

Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
           G    Y+GGP   G     A  ++    AAAAAA AAAA+                 +Q+
Sbjct: 313 G--GDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGG---------------AQQ 355

Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP---SGLSPLAMNPTRAA 235
            S +  M  G S        GG      P   +P    G M P    G +P +      +
Sbjct: 356 RSHHAPMSPGSSGG------GGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPS 409

Query: 236 GMTPLYAGQRLPQ--HGYPG------PPQAQPLPRQGVKR------TYSEVYP--GQQ-- 277
           G          PQ  HGYPG       PQ  P+  QG  +      +Y++  P  GQQ  
Sbjct: 410 G----------PQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGP 459

Query: 278 --YLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLH-----Y 330
             Y Q GQ  P   Q +P P Q   P    P  + P  Q   Q      P  L      Y
Sbjct: 460 SGYGQQGQ-TPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPY 518

Query: 331 KPTRSIPGYPSSPLP---GNPTPPMTPSSSVPYMSPNQEVKSPF 371
               S P +  SP P      T    P S  PY  P  + +SP+
Sbjct: 519 SQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQP--QAQSPY 560



 Score = 39.7 bits (91), Expect = 0.013
 Identities = 83/346 (23%), Positives = 124/346 (35%), Gaps = 68/346 (19%)

Query: 85  SPQCLGQQAFAEGGANKGYVQQGVYSRGGYP---------------GAPGFTTGYAGGPG 129
           +P  L QQA A         QQ  YS+  +P                AP  T+   GG  
Sbjct: 569 APSTLSQQA-AYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSS-KGGQE 626

Query: 130 GLGLPSHAARPST--DFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGA 187
            + L S  +RPS+  D + +     +    A +   +T+ +++ Q +QS          A
Sbjct: 627 DMNL-SLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNP--------A 677

Query: 188 GQSFNSQFLQH-GGPRGPSV-PAG------------MNPTGIGGVM----GPSGLSPLAM 229
              F+     H  G RGPS  P G            ++P  + G       PSG S   M
Sbjct: 678 QSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIM 737

Query: 230 NPTR-----AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQY 284
           +P+      A     +    ++PQ+  P P  A   PRQ             Q    G Y
Sbjct: 738 HPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALS-PRQPSGGQIHTGMGSYQQNSMGSY 796

Query: 285 APSTAQFAPSPGQPPAPS-PSYPGHRLPLQQGMTQSLSVPGPTG-LHYKPTRSIPGYPSS 342
            P   Q+ P  G P  P+  + P    P   GM   ++  G  G +H +P   IP Y + 
Sbjct: 797 GPQGGQYGPQGGYPRQPNYNALPNANYP-SAGMAGGINPMGAGGQMHGQP--GIPPYGTL 853

Query: 343 PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSG 388
           P PG           + + S       P + ++ P + S    P G
Sbjct: 854 P-PGR----------MSHASMGNRPYGPNMANMPPQVGSGMCPPPG 888



 Score = 35.0 bits (79), Expect = 0.31
 Identities = 48/188 (25%), Positives = 66/188 (35%), Gaps = 17/188 (9%)

Query: 706 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPP-TTPSTPTLAE----FTPGPPPISYQSD 760
           P QPP   +P+ YP Q S+       P+S PP + P   +  +      P P  +S Q+ 
Sbjct: 522 PSQPPHQQSPAPYPSQQST---TQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAA 578

Query: 761 IPSSLLTSEKSTACLPSQMAPAGHLDP----THNPGTPGLHTSNLGAPPGPQLHHSNPPP 816
            P       + TA    +  P   L      +     P + TS+ G      L   + P 
Sbjct: 579 YPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSM-TSSKGGQEDMNLSLQSRPS 637

Query: 817 ASRQSLGQASLGPTG-ELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLG 875
           +     G     P G E A SP     G    S  GE   PA       T+P  L    G
Sbjct: 638 SLPDLSGSIDDLPMGTEGALSPGVSTSG--ISSSQGEQSNPAQSPFSPHTSP-HLPGIRG 694

Query: 876 PPDLPTNN 883
           P   P  +
Sbjct: 695 PSPSPVGS 702



 Score = 31.2 bits (69), Expect = 4.5
 Identities = 38/128 (29%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 751 GPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLH 810
           GP   S+    P+    S           APA  L      GTPG   S   A  G    
Sbjct: 197 GPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG-GTPG---SGAAAAAG---- 248

Query: 811 HSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPEL-TNPDE 869
            S PPP+S  S   +S     +  F    G  G PS +G G     A   L +L T+P  
Sbjct: 249 -SKPPPSSSASASSSS-SSFAQQRFGAMGG--GGPSAAGGGTPQPTATPTLNQLLTSPSS 304

Query: 870 LLSYLGPP 877
              Y G P
Sbjct: 305 ARGYQGYP 312



 Score = 30.8 bits (68), Expect = 5.9
 Identities = 56/273 (20%), Positives = 80/273 (29%), Gaps = 54/273 (19%)

Query: 90   GQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYA-----GGPGGLGLPSHAARPSTDF 144
            G   F   G          YSR   PG      G       GGP           P  + 
Sbjct: 1241 GSDPFMSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNM 1300

Query: 145  TQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGP 204
            +  A    +  +   +   + +     Q++Q Q+           S+ +QF   G P G 
Sbjct: 1301 STGAPQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHD--------SYGNQFSTQGTPSGS 1352

Query: 205  SVPAGMNPT----------GIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGY--P 252
              P+                + G  GP      A          P   GQ  PQ     P
Sbjct: 1353 PFPSQQTTMYQQQQQNYKRPMDGTYGPP-----AKRHEGEMYSVPYSTGQGQPQQQQLPP 1407

Query: 253  GPPQ-------AQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSY 305
              PQ       AQP P+Q V   Y   YP          A +  +  P+ G         
Sbjct: 1408 AQPQPASQQQAAQPSPQQDVYNQYGNAYPAT--------ATAATERRPAGG--------- 1450

Query: 306  PGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPG 338
            P ++ P Q G  +  + PG       P + + G
Sbjct: 1451 PQNQFPFQFGRDRVSAPPGTNAQQNMPPQMMGG 1483


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 108/404 (26%), Positives = 140/404 (34%), Gaps = 96/404 (23%)

Query: 16  HGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSSMMPG 75
           HG  +  Y S    +SA  P      +++  G          G P   A + +GS   P 
Sbjct: 205 HGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG----------GTPGSGAAAAAGSKPPP- 253

Query: 76  VAGGSSALTSPQCLGQQAF-AEGGANKGYVQQGV----------------YSRGGYPGAP 118
            +  +SA +S     QQ F A GG        G                  S  GY G P
Sbjct: 254 -SSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYP 312

Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
           G    Y+GGP   G     A  ++    AAAAAA AAAA+                 +Q+
Sbjct: 313 G--GDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGG---------------AQQ 355

Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP---SGLSPLAMNPTRAA 235
            S +  M  G S        GG      P   +P    G M P    G +P +      +
Sbjct: 356 RSHHAPMSPGSSGG------GGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPS 409

Query: 236 GMTPLYAGQRLPQ--HGYPG------PPQAQPLPRQGVKR------TYSEVYP--GQQ-- 277
           G          PQ  HGYPG       PQ  P+  QG  +      +Y++  P  GQQ  
Sbjct: 410 G----------PQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGP 459

Query: 278 --YLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLH-----Y 330
             Y Q GQ  P   Q +P P Q   P    P  + P  Q   Q      P  L      Y
Sbjct: 460 SGYGQQGQ-TPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPY 518

Query: 331 KPTRSIPGYPSSPLP---GNPTPPMTPSSSVPYMSPNQEVKSPF 371
               S P +  SP P      T    P S  PY  P  + +SP+
Sbjct: 519 SQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQP--QAQSPY 560



 Score = 39.7 bits (91), Expect = 0.013
 Identities = 83/346 (23%), Positives = 124/346 (35%), Gaps = 68/346 (19%)

Query: 85  SPQCLGQQAFAEGGANKGYVQQGVYSRGGYP---------------GAPGFTTGYAGGPG 129
           +P  L QQA A         QQ  YS+  +P                AP  T+   GG  
Sbjct: 569 APSTLSQQA-AYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSS-KGGQE 626

Query: 130 GLGLPSHAARPST--DFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGA 187
            + L S  +RPS+  D + +     +    A +   +T+ +++ Q +QS          A
Sbjct: 627 DMNL-SLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNP--------A 677

Query: 188 GQSFNSQFLQH-GGPRGPSV-PAG------------MNPTGIGGVM----GPSGLSPLAM 229
              F+     H  G RGPS  P G            ++P  + G       PSG S   M
Sbjct: 678 QSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIM 737

Query: 230 NPTR-----AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQY 284
           +P+      A     +    ++PQ+  P P  A   PRQ             Q    G Y
Sbjct: 738 HPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALS-PRQPSGGQIHTGMGSYQQNSMGSY 796

Query: 285 APSTAQFAPSPGQPPAPS-PSYPGHRLPLQQGMTQSLSVPGPTG-LHYKPTRSIPGYPSS 342
            P   Q+ P  G P  P+  + P    P   GM   ++  G  G +H +P   IP Y + 
Sbjct: 797 GPQGGQYGPQGGYPRQPNYNALPNANYP-SAGMAGGINPMGAGGQMHGQP--GIPPYGTL 853

Query: 343 PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSG 388
           P PG           + + S       P + ++ P + S    P G
Sbjct: 854 P-PGR----------MSHASMGNRPYGPNMANMPPQVGSGMCPPPG 888



 Score = 35.0 bits (79), Expect = 0.31
 Identities = 48/188 (25%), Positives = 66/188 (35%), Gaps = 17/188 (9%)

Query: 706 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPP-TTPSTPTLAE----FTPGPPPISYQSD 760
           P QPP   +P+ YP Q S+       P+S PP + P   +  +      P P  +S Q+ 
Sbjct: 522 PSQPPHQQSPAPYPSQQST---TQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAA 578

Query: 761 IPSSLLTSEKSTACLPSQMAPAGHLDP----THNPGTPGLHTSNLGAPPGPQLHHSNPPP 816
            P       + TA    +  P   L      +     P + TS+ G      L   + P 
Sbjct: 579 YPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSM-TSSKGGQEDMNLSLQSRPS 637

Query: 817 ASRQSLGQASLGPTG-ELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLG 875
           +     G     P G E A SP     G    S  GE   PA       T+P  L    G
Sbjct: 638 SLPDLSGSIDDLPMGTEGALSPGVSTSG--ISSSQGEQSNPAQSPFSPHTSP-HLPGIRG 694

Query: 876 PPDLPTNN 883
           P   P  +
Sbjct: 695 PSPSPVGS 702



 Score = 31.2 bits (69), Expect = 4.5
 Identities = 38/128 (29%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 751 GPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLH 810
           GP   S+    P+    S           APA  L      GTPG   S   A  G    
Sbjct: 197 GPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG-GTPG---SGAAAAAG---- 248

Query: 811 HSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPEL-TNPDE 869
            S PPP+S  S   +S     +  F    G  G PS +G G     A   L +L T+P  
Sbjct: 249 -SKPPPSSSASASSSS-SSFAQQRFGAMGG--GGPSAAGGGTPQPTATPTLNQLLTSPSS 304

Query: 870 LLSYLGPP 877
              Y G P
Sbjct: 305 ARGYQGYP 312


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 79/290 (27%), Positives = 100/290 (34%), Gaps = 45/290 (15%)

Query: 58  GNPMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
           G P   AG PS +      AG S   T P+  G      GG   GY  + +    GY   
Sbjct: 337 GEPSPGAGEPSKAGPSGATAGASGRATGPEAAG--GGGAGGGGGGY--RPIIQSPGYKTG 392

Query: 118 PGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
            G   GY    GG   P      +T   Q+    A A A   A+    A   A    Q Q
Sbjct: 393 KG---GYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQ 449

Query: 178 ELSQYGAMGAG------QSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
            L    A G G      Q  +      GGP  P  P+G  P G+            + +P
Sbjct: 450 GLLGPQAYGQGFGGGQAQDLSKAPSYSGGP--PQPPSGPPPPGLATCQ--------SYSP 499

Query: 232 TRAAGMTPLYAGQRLPQHGYPGP-PQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPST-- 288
            +  G   LY  Q  P   YPGP   +Q LP      +YS  +       GG + PS+  
Sbjct: 500 DQLQGQ--LYGVQGEP---YPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLG 554

Query: 289 -------------AQFAPSPGQPP-APSPSYPGHRLPLQQGMTQSLSVPG 324
                         Q  P+ G+PP   SP  PG  L         L+ PG
Sbjct: 555 GGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPG 604



 Score = 42.0 bits (97), Expect = 0.003
 Identities = 54/201 (26%), Positives = 71/201 (35%), Gaps = 55/201 (27%)

Query: 200  GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQP 259
            GP+  S P G                PLA                  P    PGPP   P
Sbjct: 1412 GPKDTSTPDG---------------PPLA------------------PAAAVPGPP---P 1435

Query: 260  LPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQS 319
            LP  G+    S   P    L+  +  P T   AP+P   P P P  P   LP        
Sbjct: 1436 LP--GLPSANSNGTPEPPLLE--EKPPPTPPPAPTPQPQPPPPPPPPQPALP----SPPP 1487

Query: 320  LSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQE-----VKSPFLPD 374
            L  P P+     P   +P  P   +P  P PP  P ++ P  +P +E      + P LPD
Sbjct: 1488 LVAPTPSS---PPPPPLPPPPPPAMPSPPPPP--PPAAAPLAAPPEEPAAPSPEDPELPD 1542

Query: 375  LKP-NLNSLHSSPSGSGPCDE 394
             +P +L     + +  G  DE
Sbjct: 1543 TRPLHLAKKQETAAVCGETDE 1563



 Score = 38.9 bits (89), Expect = 0.022
 Identities = 38/122 (31%), Positives = 45/122 (36%), Gaps = 28/122 (22%)

Query: 699  PGAAPFAPLQPPSVPAPSDYPGQGSSFLG----PGTFPESFPPTTPSTPTLAEFTPGPPP 754
            P   P AP    +VP P   PG  S+       P    E  PPT P  PT  +  P PPP
Sbjct: 1419 PDGPPLAPAA--AVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPT-PQPQPPPPP 1475

Query: 755  ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 814
               Q  +PS            P  +AP     P+  P  P      L  PP P +    P
Sbjct: 1476 PPPQPALPSP-----------PPLVAPT----PSSPPPPP------LPPPPPPAMPSPPP 1514

Query: 815  PP 816
            PP
Sbjct: 1515 PP 1516



 Score = 38.5 bits (88), Expect = 0.028
 Identities = 43/156 (27%), Positives = 53/156 (33%), Gaps = 50/156 (32%)

Query: 202 RGPSVPA--GMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQP 259
           + P+VP+  G      GGV+GP+GL P    P R                  PGPP   P
Sbjct: 195 QAPTVPSSLGFERLAGGGVLGPAGLGPAQTPPYR------------------PGPPDPPP 236

Query: 260 LPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG----QPPAPSPSYPGHRLPLQQG 315
            PR           P Q  L     A + A    SP        AP P  P   LP Q  
Sbjct: 237 PPRH---------LPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAPGPPPPERALPRQDT 287

Query: 316 MTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPP 351
           + +          HY+        P+S  P  P PP
Sbjct: 288 VIK----------HYQ-------RPASAQPPPPPPP 306



 Score = 35.8 bits (81), Expect = 0.18
 Identities = 77/326 (23%), Positives = 100/326 (30%), Gaps = 47/326 (14%)

Query: 62  GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
           G  G   GS ++ G  G  +  T  +    Q   +  +       G     G  GA   +
Sbjct: 614 GYKGKGDGSELLAGPGGPPAERTEDEEFLIQHLLQAPSPPR--TSGADGLVGEDGAADAS 671

Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATV----AALQEKQSQ 177
            G  G  G  G P      + +  Q     +V   +A+    ATA +      L+EK+  
Sbjct: 672 KGLGGSGGAGGPPGTPYELAKEDPQRYHLQSVIRTSASLDEGATAALELGLGRLKEKKKG 731

Query: 178 E----------LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPL 227
                       +     GAG      FLQ   P  P       PT       P GL   
Sbjct: 732 PERGGETPEGLATSVVHYGAGAKELGAFLQKSPPPPPPTAQSTQPT-------PHGLLLE 784

Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPS 287
           A  P              LP    P PPQ  P     V        P    +      P+
Sbjct: 785 AGGPD-------------LPLVLPPPPPQLLP----SVLSHAPSPSPSASKVGVHLLEPA 827

Query: 288 TAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSI--PGYPSSPLP 345
           T   AP P  PP P P  P   L L+  +      P       +P  S+  PG     L 
Sbjct: 828 TRDGAPQPPPPPPPPP--PPMPLQLEAHLRSHGLEPAAPSPRLRPEESLDPPGAMQELLG 885

Query: 346 G-NPTPPMTPSSSVPYMSPNQEVKSP 370
              P PP    + V    PN E K P
Sbjct: 886 ALEPLPPAPGDTGVG--PPNSEGKDP 909



 Score = 33.9 bits (76), Expect = 0.69
 Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 23/142 (16%)

Query: 237  MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP-SP 295
            M  ++ G     +G  GPP+ +  P+ G         PG          P+   + P  P
Sbjct: 950  MEEMFGGGAADDYGKAGPPEDEGDPKAGAGPP-----PGP---------PAYDPYGPYCP 995

Query: 296  GQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPS 355
            G+     P  PG       G+  +     P+ ++ +P   I   P    P  P PP  P 
Sbjct: 996  GRASGAGPETPG------LGLDPNKPPELPSTVNAEPLGLIQSGPHQAAP--PPPPPPPP 1047

Query: 356  SSVPYMSPNQEVKSPFLPDLKP 377
               P   P   + SP     KP
Sbjct: 1048 PPAPASEPKGGLTSPIFCSTKP 1069



 Score = 33.9 bits (76), Expect = 0.69
 Identities = 38/127 (29%), Positives = 44/127 (34%), Gaps = 16/127 (12%)

Query: 286  PSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPS-SPL 344
            P  A  A  PG PP P        LP       S   P P  L  KP  + P  P+  P 
Sbjct: 1422 PPLAPAAAVPGPPPLPG-------LP----SANSNGTPEPPLLEEKPPPTPPPAPTPQPQ 1470

Query: 345  PGNPTPPMTPS--SSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVR 402
            P  P PP  P+  S  P ++P     SP  P L P       SP    P     L  P  
Sbjct: 1471 PPPPPPPPQPALPSPPPLVAPTP--SSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPE 1528

Query: 403  DGVVLEP 409
            +     P
Sbjct: 1529 EPAAPSP 1535



 Score = 33.5 bits (75), Expect = 0.91
 Identities = 46/222 (20%), Positives = 75/222 (33%), Gaps = 31/222 (13%)

Query: 655 KPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI-----------------AAL 697
           +P PV   + +++ P  P      +      L PS    +                 A L
Sbjct: 160 RPFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPSQAPTVPSSLGFERLAGGGVLGPAGL 219

Query: 698 GPGAAP-FAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPIS 756
           GP   P + P  P   P P   P Q +          +   ++P     +   PGPPP  
Sbjct: 220 GPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAPGPPPPE 279

Query: 757 YQSDIPSSLLTS-EKSTACLPSQMAPAGHLDPTH---NPGTPGL-HTSNLGAPPGPQLHH 811
                  +++   ++  +  P    P  H    +       P + H +NL   P   L  
Sbjct: 280 RALPRQDTVIKHYQRPASAQPPPPPPPAHALQHYLSCGGSYPSMGHRANLACSP---LGG 336

Query: 812 SNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEA 853
             P P + +    +  GP+G  A + A+G    P  +G G A
Sbjct: 337 GEPSPGAGE---PSKAGPSG--ATAGASGRATGPEAAGGGGA 373



 Score = 32.7 bits (73), Expect = 1.5
 Identities = 37/136 (27%), Positives = 44/136 (32%), Gaps = 22/136 (16%)

Query: 719 PGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQ 778
           PGQ    LGP  + + F        + A    G PP       P  L T +  +   P Q
Sbjct: 445 PGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGPPQPPSGPPPPGLATCQSYS---PDQ 501

Query: 779 MAPAGHLDPTHNPGTPGLHTSNLGAP-PGPQLHHSNPPPASRQSLGQASLGPTGELAFSP 837
           +               G      G P PGP  H    P AS          P    A S 
Sbjct: 502 L--------------QGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSP----ALSG 543

Query: 838 ATGVMGPPSMSGAGEA 853
             G  GP S+ G GEA
Sbjct: 544 HGGGWGPSSLGGGGEA 559



 Score = 31.2 bits (69), Expect = 4.5
 Identities = 48/166 (28%), Positives = 60/166 (36%), Gaps = 36/166 (21%)

Query: 706 PLQPPSVPAPSD----------------YPGQGSSFLGPGTFPESFPPTTPSTPTLAEFT 749
           P QPPS P P                  Y  QG  + GP    +  P  +PS   L+  T
Sbjct: 479 PPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGLPTASPS---LSYST 535

Query: 750 PGPPPISYQSD--IPSSL---LTSEKSTACLPSQMAPA-GHLDPTHNPGTPGLHTSNLGA 803
              P +S       PSSL     +  S    P Q  PA G      +PG PG + S++ A
Sbjct: 536 GHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLA 595

Query: 804 PPGPQLHHSNPPPASRQSLGQASL---GPTGELAFSPATGVMGPPS 846
              P L    PP A   + G       G   EL   P     GPP+
Sbjct: 596 -SAPFL---APPGAGSYAAGAGGYKGKGDGSELLAGPG----GPPA 633


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 89/309 (28%), Positives = 102/309 (33%), Gaps = 37/309 (11%)

Query: 60  PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEG--GANKGYVQQGVYSRGGYPGA 117
           P GP G P+G    PG   G +    PQ L       G  G N    + G     G PGA
Sbjct: 616 PQGPPG-PTG----PGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGA 670

Query: 118 PGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
           PG   G AG PG  G P  A  P       A           A        A     Q  
Sbjct: 671 PG-GKGDAGAPGERGPPGLAGAPG--LRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGM 727

Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGM 237
              + G    G   +    + GGP    VP    P G  G +GP G  P      +  G 
Sbjct: 728 PGERGGLGSPGPKGDKG--EPGGPGADGVPGKDGPRGPTGPIGPPG--PAGQPGDKGEGG 783

Query: 238 TPLYAGQRLP-----QHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGG---QYAPSTA 289
            P   G   P     + G  GPP     P            PGQ    GG   + AP   
Sbjct: 784 APGLPGIAGPRGSPGERGETGPPGPAGFPGA----------PGQNGEPGGKGERGAPGEK 833

Query: 290 QFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVP-GPTGLHYKPTRSIPGYPSSPLPGNP 348
                PG    P  S P    P  QG+      P GP    +   R +PG P S   GNP
Sbjct: 834 GEGGPPGVAGPPGGSGPAGP-PGPQGVKGERGSPGGPGAAGFPGARGLPGPPGS--NGNP 890

Query: 349 TPPMTPSSS 357
            PP  PS S
Sbjct: 891 GPP-GPSGS 898



 Score = 54.3 bits (129), Expect = 5e-07
 Identities = 99/401 (24%), Positives = 124/401 (30%), Gaps = 75/401 (18%)

Query: 13   PAPHGD----GSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP--MGPAGS 66
            P P GD    G    + VP +     P G +         G+  +    G P   GP GS
Sbjct: 737  PGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGS 796

Query: 67   PS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT--T 122
            P   G +  PG AG       P   GQ     G   +G    G    GG PG  G    +
Sbjct: 797  PGERGETGPPGPAG------FPGAPGQNGEPGGKGERG--APGEKGEGGPPGVAGPPGGS 848

Query: 123  GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQY 182
            G AG PG  G+      P          A        +         +    +       
Sbjct: 849  GPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPA 908

Query: 183  GAMGAGQSFN--------SQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLS--PLAMNPT 232
            G  GA  S           Q  + G P     P    P GI G+ G  GL+  P    P 
Sbjct: 909  GNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPR 968

Query: 233  RAAGMTPLYAGQRLP----QHGYPGPPQAQPLPRQGVKRTYSEV----YPGQQYLQGGQY 284
             + G   +      P      G  GPP  Q LP  G+  T  E      PG   L G   
Sbjct: 969  GSPGPQGVKGESGKPGANGLSGERGPPGPQGLP--GLAGTAGEPGRDGNPGSDGLPGRDG 1026

Query: 285  APSTAQFAPSPGQPPAP-SPSYPGHRLPL----------QQGMTQSLSVPGPTGLHYKPT 333
            +P         G P AP +P +PG   P+          + G       PGP G     +
Sbjct: 1027 SPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAG-----S 1081

Query: 334  RSIPGYPSSP--------------------LPGNPTPPMTP 354
            R  PG P  P                     PGNP  P +P
Sbjct: 1082 RGAPG-PQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSP 1121



 Score = 53.9 bits (128), Expect = 6e-07
 Identities = 89/349 (25%), Positives = 112/349 (32%), Gaps = 59/349 (16%)

Query: 60  PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
           PMGP G+P G    PG+ G + A                 N G   +G   + G PG PG
Sbjct: 298 PMGPRGAP-GERGRPGLPGAAGAR---------------GNDG--ARGSDGQPGPPGPPG 339

Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
            T G+ G PG  G    A  P ++              A A                 E+
Sbjct: 340 -TAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEM 398

Query: 180 SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPLAMNP----TRA 234
              G  GA            G RGP  PAG N   G+ G  G  G +     P     R 
Sbjct: 399 GPAGIPGAPGLM--------GARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERG 450

Query: 235 AGMTPLYAGQRLP--QHGYPGPPQAQPLPRQGVKR--------TYSEVYPGQQYLQGGQY 284
               P   G +    + G PG P A  LP    +R              PG++   G + 
Sbjct: 451 EAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERG 510

Query: 285 APSTAQFAPSPGQPPAPS-PSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSS 342
           AP  A    + G+P     P  PG R +P   G   S   PGP G          G    
Sbjct: 511 APGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQ--------GESGR 562

Query: 343 PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGP 391
           P P  P+ P      + +  P          D  P  N     P G GP
Sbjct: 563 PGPPGPSGPRGQPGVMGFPGPKGN-------DGAPGKNGERGGPGGPGP 604



 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 105/434 (24%), Positives = 129/434 (29%), Gaps = 90/434 (20%)

Query: 6   PMKPALPPAPHGDGSFAYESVPWQ------QSATQPAGSLSVVTTVWGVGNATQSQVLGN 59
           P  P +  +P G G      +P        +    PAG+        G G   ++   G 
Sbjct: 383 PGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGE 442

Query: 60  PMGPAGSPSGSSMMPGVAGGSS------------ALTSPQCLGQQAF----AEGGANKGY 103
           P GP G   G + +PGV G               A   P   G++         G N   
Sbjct: 443 P-GPRGE-RGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIP 500

Query: 104 VQQGVYSRGGYPGAPG--------FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAA 155
            ++G     G PG  G           G  GGPG  G+P     P +D       +   +
Sbjct: 501 GEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGES 560

Query: 156 AAATATATATATVAALQEKQSQELSQYGAMG-AGQSFNSQFLQHGGPRG-PSVPAGMNPT 213
                               S    Q G MG  G   N       G RG P  P    P 
Sbjct: 561 GRPGPPGP------------SGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPP 608

Query: 214 GIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQG--VKRTYSE 271
           G  G  GP G  P    P    G T           G PGP   Q LP  G         
Sbjct: 609 GKNGETGPQG-PPGPTGPGGDKGDT-----------GPPGPQGLQGLPGTGGPPGENGKP 656

Query: 272 VYPGQQYLQGGQYAPSTAQFAPSPGQ-----------------PPAPS--------PSYP 306
             PG +   G   AP     A +PG+                 PP P         P  P
Sbjct: 657 GEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPP 716

Query: 307 GHR-LPLQQGM---TQSLSVPGPTGLHYKP-TRSIPGYPSSPLPGNPTPPMTPSSSVPYM 361
           G    P  QGM      L  PGP G   +P      G P    P  PT P+ P       
Sbjct: 717 GAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQP 776

Query: 362 SPNQEVKSPFLPDL 375
               E  +P LP +
Sbjct: 777 GDKGEGGAPGLPGI 790



 Score = 47.0 bits (110), Expect = 8e-05
 Identities = 95/356 (26%), Positives = 114/356 (32%), Gaps = 54/356 (15%)

Query: 12   PPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSS 71
            PP P G     +   P Q    +P G         G   A   +  G P G AG P GS 
Sbjct: 805  PPGPAG-----FPGAPGQNG--EPGGK--------GERGAPGEKGEGGPPGVAGPPGGSG 849

Query: 72   MM--PGVAGGSSALTSPQCLGQQAF--AEG-----GANKGYVQQGVYSRGGYPGAPG--F 120
                PG  G      SP   G   F  A G     G+N      G     G  G PG   
Sbjct: 850  PAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAG 909

Query: 121  TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
             TG  G PG  G    A +P    +  A     A           A   A          
Sbjct: 910  NTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRG 969

Query: 181  QYGAMGA-GQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP----TRAA 235
              G  G  G+S         G RGP  P G+   G+ G  G  G      NP        
Sbjct: 970  SPGPQGVKGESGKPGANGLSGERGPPGPQGL--PGLAGTAGEPGRDG---NPGSDGLPGR 1024

Query: 236  GMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSP 295
              +P   G R  ++G PG P A   P          V P  +    G+  P+    AP P
Sbjct: 1025 DGSPGGKGDR-GENGSPGAPGAPGHPGPP-----GPVGPAGKSGDRGESGPAGPAGAPGP 1078

Query: 296  -GQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTP 350
             G   AP P  P       +G        G  G+  K  R  PG P +  PG+P P
Sbjct: 1079 AGSRGAPGPQGP-------RGDKGETGERGAAGI--KGHRGFPGNPGA--PGSPGP 1123



 Score = 41.6 bits (96), Expect = 0.003
 Identities = 47/178 (26%), Positives = 57/178 (32%), Gaps = 30/178 (16%)

Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTP--TLAEFTPGPPPIS 756
           PG A F     P  P  +  PG       PG   E  PP     P  +     PGP  + 
Sbjct: 806 PGPAGF-----PGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVK 860

Query: 757 YQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTS-NLGAPPGPQLHHSNP- 814
            +   P          A  P      G      NPG PG   S     PPGP  +   P 
Sbjct: 861 GERGSPGG-----PGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPG 915

Query: 815 ------------PPASRQSLGQ----ASLGPTGELAFSPATGVMGPPSMSGAGEAPEP 856
                        P  + S G      + GP G    + A G+ GPP M G   +P P
Sbjct: 916 SPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGP 973



 Score = 40.8 bits (94), Expect = 0.006
 Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 772 TACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHS-----NPPPASRQSLGQAS 826
           TA  P      G + P  +PG+ G         PGPQ H        PP  +    G+  
Sbjct: 340 TAGFPGSPGAKGEVGPAGSPGSNGAPGQR--GEPGPQGHAGAQGPPGPPGINGSPGGKGE 397

Query: 827 LGPTGELAFSPATGVMGPPSMSGAGEAP 854
           +GP G        G  GPP  +GA  AP
Sbjct: 398 MGPAGIPGAPGLMGARGPPGPAGANGAP 425



 Score = 38.5 bits (88), Expect = 0.028
 Identities = 46/170 (27%), Positives = 56/170 (32%), Gaps = 26/170 (15%)

Query: 694 IAALGPGAAPFAPLQPPSVPAPSDYPGQGSS--FLGPGTFPESFPPTTPSTPTLAEFTPG 751
           +  L     P  P  PP  P  S +PG   S  + GP   P    P+ P  P  A    G
Sbjct: 166 VGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSG 225

Query: 752 PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGL--------HTSNLGA 803
           P     +S  P      E+     P    PAG       PG PG+             G 
Sbjct: 226 PAGKDGESGRPGR--PGERGLPGPPGIKGPAG------IPGFPGMKGHRGFDGRNGEKGE 277

Query: 804 PPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEA 853
              P L   N  P    + G   +GP G      A G  G P + GA  A
Sbjct: 278 TGAPGLKGENGLPGENGAPG--PMGPRG------APGERGRPGLPGAAGA 319



 Score = 36.6 bits (83), Expect = 0.11
 Identities = 50/175 (28%), Positives = 61/175 (34%), Gaps = 14/175 (8%)

Query: 199 GGPRGPSVPAGMNPTGIGGVMGPSGL--SPLAMNPTRAAGMTPLYAGQRLP-QHGYPGPP 255
           G P  P  P    P G  G  GPSG    P A+ P+  AG          P + G PGPP
Sbjct: 189 GHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPP 248

Query: 256 QAQ-PLPRQGVKRTYS-EVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQ 313
             + P    G         + G+   +G   AP        PG+  AP P  P    P +
Sbjct: 249 GIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGP-RGAPGE 307

Query: 314 QGMTQSLSVPGPTGLHYKP-TRSIPGYPSSPLP----GNPTPPMTPSSSVPYMSP 363
           +G      +PG  G       R   G P  P P    G P  P       P  SP
Sbjct: 308 RGRP---GLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 359



 Score = 35.4 bits (80), Expect = 0.24
 Identities = 44/168 (26%), Positives = 54/168 (32%), Gaps = 27/168 (16%)

Query: 698 GPGA-------APFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTP 750
           GPGA        P  P  P   P P+  PG       PG    + P  +P          
Sbjct: 748 GPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGE----RGET 803

Query: 751 GPP-PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQL 809
           GPP P  +      +     K     P +    G   P    G PG   S    PPGPQ 
Sbjct: 804 GPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGG---PPGVAGPPG--GSGPAGPPGPQG 858

Query: 810 HHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPA 857
                         + S G  G   F  A G+ GPP  +G    P P+
Sbjct: 859 VKGE----------RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPS 896



 Score = 34.7 bits (78), Expect = 0.41
 Identities = 46/175 (26%), Positives = 58/175 (33%), Gaps = 51/175 (29%)

Query: 200 GPRGPSVPAGMNPTGIGGVMGPSGL-----SPLAMNPTRAAGMTPLYAGQRLPQH----- 249
           GP+GP    G  P GI G  G  G+     SP +  P       P       PQ+     
Sbjct: 103 GPQGPKGDPG--PPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDV 160

Query: 250 ----------GYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPP 299
                     GYPGP    P P            PG     G   +P +  +   PG+P 
Sbjct: 161 KSGVAVGGLAGYPGPA-GPPGP------------PGPPGTSGHPGSPGSPGYQGPPGEPG 207

Query: 300 APSPSYP-------GHRLPL-------QQGMTQSLSVPGPTGLHYKPTRSIPGYP 340
              PS P       G   P        + G      +PGP G+  K    IPG+P
Sbjct: 208 QAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGI--KGPAGIPGFP 260



 Score = 34.7 bits (78), Expect = 0.41
 Identities = 48/189 (25%), Positives = 60/189 (31%), Gaps = 38/189 (20%)

Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE 769
           P  P P   PG+        T P+   P  P+ P   +   GPP       +P       
Sbjct: 599 PGGPGPQGPPGKNGE-----TGPQG--PPGPTGPGGDKGDTGPPGPQGLQGLPG------ 645

Query: 770 KSTACLPSQMAPAGHLDPTHNPGTPGLH--TSNLGAP-----PG----PQLHHSNPPPAS 818
             T   P +    G   P  + G PG      + GAP     PG    P L     PP  
Sbjct: 646 --TGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGP 703

Query: 819 RQSLGQASLGPTGELAFSPATGVMGPPSMSGA----------GEAPEPALDLLPELTNPD 868
               G A  GP G    +   G+ G P   G           GE   P  D +P    P 
Sbjct: 704 EGGKGAA--GPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPR 761

Query: 869 ELLSYLGPP 877
                +GPP
Sbjct: 762 GPTGPIGPP 770



 Score = 33.9 bits (76), Expect = 0.69
 Identities = 50/177 (28%), Positives = 61/177 (34%), Gaps = 31/177 (17%)

Query: 698 GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISY 757
           GP     AP  P      +  PG+     GPG       P +P  P  ++  PGPP    
Sbjct: 504 GPAGERGAP-GPAGPRGAAGEPGRDGVPGGPGM---RGMPGSPGGPG-SDGKPGPPGSQG 558

Query: 758 QSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLG-APPGPQLHHSNPPP 816
           +S  P     S         Q    G   P  N G PG +    G   PGPQ     PP 
Sbjct: 559 ESGRPGPPGPSGPR-----GQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQ----GPPG 609

Query: 817 ASRQSLGQASLGPTGE--------------LAFSPATGVMGPPSMSGAGEAPEPALD 859
            + ++  Q   GPTG               L   P TG  GPP  +G    P P  D
Sbjct: 610 KNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTG--GPPGENGKPGEPGPKGD 664



 Score = 33.5 bits (75), Expect = 0.91
 Identities = 40/156 (25%), Positives = 48/156 (30%), Gaps = 24/156 (15%)

Query: 713  PAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP----PISYQSDIPSSL--- 765
            P     PG+  S  G G   E+  P  P  P      PGPP    P     D   S    
Sbjct: 1016 PGSDGLPGRDGSPGGKGDRGENGSPGAPGAPG----HPGPPGPVGPAGKSGDRGESGPAG 1071

Query: 766  ---LTSEKSTACLPSQMAPAGHLDPTHNPGTPGL--HTSNLGAPPGPQLHHSNPPPASRQ 820
                     +   P    P G    T   G  G+  H    G P  P     +P PA +Q
Sbjct: 1072 PAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAP----GSPGPAGQQ 1127

Query: 821  SLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEP 856
                 ++G  G        G  GPP   G    P P
Sbjct: 1128 G----AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGP 1159


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 108/393 (27%), Positives = 133/393 (33%), Gaps = 66/393 (16%)

Query: 6   PMKPALPPAPHG-DGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA 64
           P KP  P  P G  GS  +   P  +    P G+          G   Q    G P GP 
Sbjct: 362 PGKPG-PMGPLGIPGSSGFPGNPGMKGEAGPTGARGPE------GPQGQRGETGPP-GPV 413

Query: 65  GSPS--GSSMMPGVAGGSSALTSPQCLGQQAFA----EGGANKGYVQQGVYSRGGYPGAP 118
           GSP   G+    G  G      SP   G    A      G       QG+  + G PG P
Sbjct: 414 GSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVP 473

Query: 119 GFTTGYAG-----GPGGL----GLPSHAAR--PSTDFTQAAAAAAVAAAAATATATATAT 167
           GF  G AG     GP G+    G P    +  P  D         V    A        +
Sbjct: 474 GFK-GEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGS 532

Query: 168 VAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPL 227
                 K +Q   + G +G+     SQ    G P  P +P     TG  GV GP G    
Sbjct: 533 DGLPGPKGAQ--GERGPVGSSGPKGSQG-DPGRPGEPGLPGARGLTGNPGVQGPEG---- 585

Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPS 287
            + P  A G           + G PGPP +  +  Q      S   PG +   G    P 
Sbjct: 586 KLGPLGAPG-----------EDGRPGPPGSIGIRGQ----PGSMGLPGPKGSSGDPGKPG 630

Query: 288 TAQFAPSPGQPPAP------SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPS 341
            A  A  PGQ  AP       PS P    P   G       PGPTG      + +PG P 
Sbjct: 631 EAGNAGVPGQRGAPGKDGEVGPSGPVGP-PGLAGERGEQGPPGPTGF-----QGLPGPPG 684

Query: 342 SP----LPGNPTPPMTPSSSVPYMSPNQEVKSP 370
            P     PG+   P  P +  P + P  E  +P
Sbjct: 685 PPGEGGKPGDQGVPGDPGAVGP-LGPRGERGNP 716



 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 98/386 (25%), Positives = 124/386 (32%), Gaps = 57/386 (14%)

Query: 33  TQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQ 92
           T P     V +   G GN    +      G  G P    ++ G+ G       P   G +
Sbjct: 87  TPPGECCPVCSQTPGGGNTNFGR---GRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPR 143

Query: 93  AFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTD-----FTQA 147
              E G       +G     G PG PG        PG  G P H + P  D     F+  
Sbjct: 144 G--ERGPKGRPGPRGPQGIDGEPGVPG-------QPGAPGPPGHPSHPGPDGLSRPFSAQ 194

Query: 148 AAAAAVAAAAATATATATATVAALQEKQSQEL-SQYGAMGAGQSFNSQFLQHGGPRGPSV 206
            A     +   +       +V  +  +  Q L  Q G  GAG +        G P  P  
Sbjct: 195 MAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQG--GAGPT--------GPPGEPGD 244

Query: 207 PAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVK 266
           P  M P G  G  GP G       P R      +         G+PG P    LP  G+K
Sbjct: 245 PGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAP---GLP--GLK 299

Query: 267 RTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPT 326
                 + G +  +G   AP +   A   G   A  P  P   +P ++G       PG  
Sbjct: 300 G--HRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP-RGMPGERGRLGPQGAPGQR 356

Query: 327 GLHYKPTRSIPGYP-----SSPLPGNP-----------TPPMTPSSSVPYMSPNQEVKSP 370
           G H  P +  P  P     SS  PGNP             P  P        P   V SP
Sbjct: 357 GAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSP 416

Query: 371 FLP-----DLKPNLNSLHSSPSGSGP 391
            LP     D  P       SP  SGP
Sbjct: 417 GLPGAIGTDGTPGAKGPTGSPGTSGP 442



 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 102/414 (24%), Positives = 131/414 (31%), Gaps = 95/414 (22%)

Query: 9    PALPPAPHGD-GSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSP 67
            PA PP   GD G    +  P       PAG+      V   G   +  + G P GPAG+P
Sbjct: 958  PAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLP-GPAGTP 1016

Query: 68   SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT-----T 122
                   G  G +     P  +G       G+N    + G     G  G PG        
Sbjct: 1017 G----KVGPTGATGDKGPPGPVGPP-----GSNGPVGEPGPEGPAGNDGTPGRDGAVGER 1067

Query: 123  GYAGGPGGLGLPSHAARPSTDFTQAAAAAA----VAAAAATATATATATVAALQEKQSQ- 177
            G  G PG  GLP     P T     A   A       +         A    L   Q   
Sbjct: 1068 GDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPR 1127

Query: 178  -ELSQYGAMG-AGQSFNSQFLQHGGPRGPSVPAG-MNPTGIGGVMGPSGLSPLAMNPTRA 234
             +   +G  G  GQ  +  F    G  GP  P G     GI G  GP G  P  + P+  
Sbjct: 1128 GDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRG-PPGPVGPS-- 1184

Query: 235  AGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPS 294
                         + G PGP    P+   GV+ +  E  P                    
Sbjct: 1185 ------------GKEGNPGP--LGPIGPPGVRGSVGEAGP-----------------EGP 1213

Query: 295  PGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTP 354
            PG+P  P P                   PGP G        I G+    +P +P P  T 
Sbjct: 1214 PGEPGPPGP-------------------PGPPGHLTAALGDIMGHYDESMP-DPLPEFTE 1253

Query: 355  SSSVPYMSPNQEVKSPFLPDLKPNLNSLHS------SPSGS-----GPCDELRL 397
              + P      + K+   P +   L SL S      SP GS       CD+L+L
Sbjct: 1254 DQAAP------DDKNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKL 1301



 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 98/403 (24%), Positives = 127/403 (31%), Gaps = 69/403 (17%)

Query: 6   PMKPALP--------PAPHG-DGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQV 56
           P +P LP        P   G +G       P +     P GS+       G+     S  
Sbjct: 563 PGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSI-------GIRGQPGSMG 615

Query: 57  LGNPMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPG 116
           L  P G +G P      PG AG +         G+    E G +      G+    G  G
Sbjct: 616 LPGPKGSSGDPG----KPGEAGNAGVPGQRGAPGKDG--EVGPSGPVGPPGLAGERGEQG 669

Query: 117 APGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQS 176
            PG  TG+ G PG  G P    +P              A                 E   
Sbjct: 670 PPG-PTGFQGLPGPPGPPGEGGKPGDQ----GVPGDPGAVGPLGPRGERGNPGERGEPGI 724

Query: 177 QELSQYGAMGAGQSFNSQFLQHG--GPRGPSVPAGM----NPTGIGGVMGPSGLSPL--- 227
             L     M  G         HG  GP+G   P+G      P G+ G+ G  G++     
Sbjct: 725 TGLPGEKGMAGG---------HGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGP 775

Query: 228 -----AMNPTRAAGMTPLYAGQRLP-QHGYPGP-----PQAQPLPRQGVKRTYSEVYPGQ 276
                 +    A G       + LP   G PGP      + +P PR  V    S   PG 
Sbjct: 776 KGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGS 835

Query: 277 QYLQGGQYAPSTAQFAPSPGQPPAP-SPSYPGHR----LPLQQGMTQSLSVPGPTGL-HY 330
           +   G   A   A      GQP     P  PG +     P  QG+  S    GP G+   
Sbjct: 836 RGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGL 895

Query: 331 KPTRSIPGYP-------SSPLPGNPTPPMTPSSSVPYMSPNQE 366
           K  R   G P       S+   G P P   P  + P   P +E
Sbjct: 896 KGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKE 938



 Score = 38.9 bits (89), Expect = 0.022
 Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 18/142 (12%)

Query: 727 GPGTFPESFPPTTPSTPTLAEFTPGP-----PPISYQSDIPSSLLTSEKSTAC-LPSQMA 780
           G    P    P  P+ PT  +  PGP     PP S  +  P S   +  + A        
Sbjct: 795 GARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGN--PGSRGENGPTGAVGFAGPQG 852

Query: 781 PAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSL-----GQASLGPTGELAF 835
           P G       PG PG    + G+P GPQ    +P P     +     G+ + GP G   F
Sbjct: 853 PDGQPGVKGEPGEPG-QKGDAGSP-GPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGF 910

Query: 836 SPATGVMGPPSMSGAGEAPEPA 857
             + G +GPP  +G   AP PA
Sbjct: 911 PGSAGRVGPPGPAG---APGPA 929



 Score = 38.5 bits (88), Expect = 0.028
 Identities = 49/188 (26%), Positives = 62/188 (32%), Gaps = 9/188 (4%)

Query: 669 PDGPALKRCRTVSPAHVLMPSVMEMIA------ALGPGAAPFAPLQPPSVPAPSDYPGQG 722
           P+GP  +R  T  P  V  P +   I       A GP  +P     PP    P   PG  
Sbjct: 397 PEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSP-GTSGPPGSAGPPGSPGPQ 455

Query: 723 SSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPA 782
            S    G   +   P  P     A     P P   Q  I       ++     P  + P 
Sbjct: 456 GSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPP 515

Query: 783 GHLDPTHNPGTPGLHTSN-LGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGV 841
           G +     PG  G   S+ L  P G Q     P  +S     Q   G  GE     A G+
Sbjct: 516 GPVGERGAPGNRGFPGSDGLPGPKGAQ-GERGPVGSSGPKGSQGDPGRPGEPGLPGARGL 574

Query: 842 MGPPSMSG 849
            G P + G
Sbjct: 575 TGNPGVQG 582



 Score = 30.4 bits (67), Expect = 7.7
 Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 10/101 (9%)

Query: 750 PGPP-PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ 808
           PGPP  I  +    S  L   K ++  P +   AG+       G PG     +G P GP 
Sbjct: 599 PGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPG-KDGEVG-PSGPV 656

Query: 809 LHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG 849
                PP  + +   Q   GPTG   F    G  GPP   G
Sbjct: 657 ----GPPGLAGERGEQGPPGPTG---FQGLPGPPGPPGEGG 690


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 1691

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 77/315 (24%), Positives = 94/315 (29%), Gaps = 62/315 (19%)

Query: 62  GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
           GP G P     +PG+ G   +L  P   G++            Q G     G PG PG  
Sbjct: 491 GPPGQPG----LPGLPGPPGSLGFPGQKGEKG-----------QAGATGPKGLPGIPG-- 533

Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
                 PG  G P     P    T            +              +     L  
Sbjct: 534 -----APGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG 588

Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAG---MNPTGIG--GVMGPSGLSPLAMNPTRAAG 236
                 G +F  +    G P  P +P     M P G G  G +G  G+  +A NP     
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNP----- 643

Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
                        G PG P  +  P Q + +      PG     G    P        PG
Sbjct: 644 -------------GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690

Query: 297 QPPAPS----PSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTR----SIPGYPSSP----- 343
            P  P     P  PG  LP   G      +PGP G    P R      PG P  P     
Sbjct: 691 LPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGE 750

Query: 344 ----LPGNPTPPMTP 354
               LPG P PP  P
Sbjct: 751 PGFALPGPPGPPGLP 765



 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 85/332 (25%), Positives = 112/332 (33%), Gaps = 62/332 (18%)

Query: 57  LGNPMGPAGS---PSGSSMMPGVAGGSSALTSPQCLGQQAFA--EGGANKGYVQQGVYSR 111
           L  P GPAG    PS     PG  G   +       G+Q     +G      +  G+   
Sbjct: 433 LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGP 492

Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
            G PG PG      G PG LG P             A A           A         
Sbjct: 493 PGQPGLPGLP----GPPGSLGFPGQKGEKGQ-----AGATGPKGLPGIPGAPGAPGFPGS 543

Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
           + +    L+  G  G      S     G P  P +P      G+ G+ GP G        
Sbjct: 544 KGEPGDILTFPGMKGDKGELGSP----GAPGLPGLPGTPGQDGLPGLPGPKG-------- 591

Query: 232 TRAAGMTPLYAGQRLP--QHGYPG-PPQAQPLPRQGVKRTYSEVYP-GQQYLQGGQYAPS 287
               G+T  + G+R P    G PG P    P+   G    +    P G++ +QG      
Sbjct: 592 -EPGGIT--FKGERGPPGNPGLPGLPGNIGPMGPPG----FGPPGPVGEKGIQG------ 638

Query: 288 TAQFAPSPGQPPAPSP--------SYPGH-RLPLQQGMTQSLSVPGPTGLHYKP------ 332
               A +PGQP  P P        + PG   LP   G    + +PG  GL  +P      
Sbjct: 639 ---VAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIP 695

Query: 333 -TRSIPGYPSSPLPGNPTPPMTPSSSVPYMSP 363
            ++  PG P   LPG P P   P    P  +P
Sbjct: 696 GSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAP 727



 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 81/335 (24%), Positives = 104/335 (31%), Gaps = 50/335 (14%)

Query: 62   GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYV-QQGVYSRGGYPGAPGF 120
            G  G P G S  PG+ G      +P   GQ         KG +   G     G  G PG 
Sbjct: 988  GDPGQP-GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG- 1045

Query: 121  TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
             +G  G PG  GLP            +     +                 ++      + 
Sbjct: 1046 PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGS----VG 1101

Query: 181  QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
              G  G   +  ++    G P  P  P    P G  G+ GP G      NP       P+
Sbjct: 1102 DPGLPGLPGTPGAK----GQPGLPGFPGTPGPPGPKGISGPPG------NPGLPGEPGPV 1151

Query: 241  YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
              G      G+PG    QP P            PG++   G    P  A     PGQP  
Sbjct: 1152 GGG------GHPG----QPGP------------PGEKGKPGQDGIPGPAGQKGEPGQPGF 1189

Query: 301  PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP----LPGNPTPPMTPSS 356
             +P  PG  LP   G      +PG  G        +PG    P     PG   PP  P S
Sbjct: 1190 GNPGPPG--LPGLSGQKGDGGLPGIPG-----NPGLPGPKGEPGFHGFPGVQGPPGPPGS 1242

Query: 357  SVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGP 391
              P +   +    P  P  +P        P   GP
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGP 1277



 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 54/206 (26%), Positives = 69/206 (33%), Gaps = 52/206 (25%)

Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQ 758
           PG     P  PP +P P   PG       PG   +  PP            PGPP     
Sbjct: 816 PGIGVQGPPGPPGIPGPIGQPGLHGI---PGEKGDPGPPGLD--------VPGPP----- 859

Query: 759 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN----------LGAPPGPQ 808
                     E+ +  +P    P G   P  +PG PG   ++          +  PPGP 
Sbjct: 860 ---------GERGSPGIPGAPGPIG---PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907

Query: 809 LHHSNPPPASRQSL-------GQASL-GPTGELAFSPATGVMGPPS------MSGAGEAP 854
                P  +    L       GQ  L GPTGE       G+ GPP       +   GE  
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967

Query: 855 EPALDLLPELTNPDELLSYLGPPDLP 880
           EP L  +P ++ P       G P  P
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQP 993



 Score = 47.4 bits (111), Expect = 6e-05
 Identities = 100/410 (24%), Positives = 123/410 (30%), Gaps = 76/410 (18%)

Query: 6   PMKPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
           P +P LP  P   GS  +   +    Q  AT P G       + G+  A  +   G P G
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKG-------LPGIPGAPGAP--GFP-G 542

Query: 63  PAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTT 122
             G P      PG+ G    L SP   G              Q G+    G  G PG  T
Sbjct: 543 SKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPG-----QDGLPGLPGPKGEPGGIT 597

Query: 123 -----GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
                G  G PG  GLP +                       A       +   +    Q
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQ 657

Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAM-NPTRAAG 236
            ++Q G  G   +        G P  P +P      GI G  G  G+  + +  P    G
Sbjct: 658 TITQPGKPGLPGNPGRDG-DVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKG 716

Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
                        G PGPP A   P     R   E  PG     G +  P  A   P PG
Sbjct: 717 FP-----------GIPGPPGAPGTPG----RIGLEGPPGPPGFPGPKGEPGFALPGP-PG 760

Query: 297 QPPAPS----------------PSYPGHR----LPLQQGMTQSLSVPGPTGLHYKPTRSI 336
            P  P                 P  PG      LP  +G       PGP G    P   +
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGV 820

Query: 337 PGYPSSP-------------LPGNPTPPMTPSSSVPYMSPNQEVKSPFLP 373
            G P  P             +PG    P  P   VP   P  E  SP +P
Sbjct: 821 QGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVP--GPPGERGSPGIP 868



 Score = 47.4 bits (111), Expect = 6e-05
 Identities = 99/369 (26%), Positives = 122/369 (33%), Gaps = 63/369 (17%)

Query: 6    PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
            P  P LP  P   G   +   P         G   +       G   Q    GNP GP G
Sbjct: 1139 PGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG-FGNP-GPPG 1196

Query: 66   SPS-----GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG- 119
             P      G   +PG+ G +  L  P+  G+  F       G+   GV    G PG+PG 
Sbjct: 1197 LPGLSGQKGDGGLPGIPG-NPGLPGPK--GEPGF------HGF--PGVQGPPGPPGSPGP 1245

Query: 120  FTTGYAGGPGGLGLPSHAARPSTDFTQAAAA----------AAVAAAAATATATATATVA 169
               G  G PG  G P    RP     Q                +              + 
Sbjct: 1246 ALEGPKGNPGPQGPPG---RPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLP 1302

Query: 170  ALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAM 229
             L+  Q     Q      G   N      G P  P  P    P+G+ G  GP G  P  +
Sbjct: 1303 GLKGDQGPPGLQGNPGRPG--LNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEG-EPGLI 1359

Query: 230  NPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTA 289
             P    G+ P  +GQ +   G  GPP        G+        PGQ  L+ G   P   
Sbjct: 1360 GPPGPPGL-PGPSGQSIIIKGDAGPP--------GI--------PGQPGLK-GLPGPQGP 1401

Query: 290  QFAPSPGQPPAPSPSYPGHR-LPLQQGMTQSLSVPGPTGLHYKP-TRSIPGYPS-SPLPG 346
            Q  P P  PP      PG   LP   G   +    G  GL  +P TR + G P    L G
Sbjct: 1402 QGLPGPTGPPGD----PGRNGLP---GFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQG 1454

Query: 347  NPTPPMTPS 355
             P PP T S
Sbjct: 1455 PPGPPGTSS 1463



 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 74/299 (24%), Positives = 93/299 (31%), Gaps = 79/299 (26%)

Query: 62  GPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
           GP G P   G+  +PG+ G   A   PQ +        G N      G     G+PG+PG
Sbjct: 93  GPPGLPGFPGTPGLPGMPGHDGA-PGPQGIP-------GCN------GTKGERGFPGSPG 138

Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
           F  G  G PG  G+P     P +    +                                
Sbjct: 139 FP-GLQGPPGPPGIPGMKGEPGSIIMSSLP------------------------------ 167

Query: 180 SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTP 239
              G  G            G P  P +     PTGI G +GP G  P  M P    G+  
Sbjct: 168 ---GPKG----------NPGYPGPPGIQGLPGPTGIPGPIGPPG-PPGLMGPPGPPGLPG 213

Query: 240 LYAGQRL---------PQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQ 290
                 L          + G  GPP       +  +    E   G Q L G +  P    
Sbjct: 214 PKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPG 273

Query: 291 FAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP-LPGNP 348
               PG PP       G     +QG       PG  G + +P   IPG P  P  PG P
Sbjct: 274 IRGPPG-PPGGEKGEKG-----EQGEPGKRGKPGKDGENGQP--GIPGLPGDPGYPGEP 324



 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 58/192 (30%), Positives = 73/192 (38%), Gaps = 21/192 (10%)

Query: 698 GPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 755
           GP   P  P  P  P +P     PG        GT  E   P +P  P L +  PGPP I
Sbjct: 93  GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPGI 151

Query: 756 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLG--APPGPQ--LHH 811
                 P S++ S      LP      G+  P    G PG  T   G   PPGP   +  
Sbjct: 152 PGMKGEPGSIIMSS-----LPGPKGNPGYPGPPGIQGLPG-PTGIPGPIGPPGPPGLMGP 205

Query: 812 SNPP--PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 869
             PP  P  + ++G    GP GE       G+ GPP   G     +  +D+  E    D+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKG---EQGLQGPPGPPGQISEQKRPIDV--EFQKGDQ 260

Query: 870 -LLSYLGPPDLP 880
            L    GPP  P
Sbjct: 261 GLPGDRGPPGPP 272



 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 97/379 (25%), Positives = 116/379 (30%), Gaps = 68/379 (17%)

Query: 6    PMKPALPPAPHGDGSFAYES---VPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
            P KP LP  P  DG         +P Q       GS      + G+G       L  P G
Sbjct: 662  PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE-PGIPGIG-------LPGPPG 713

Query: 63   PAGSPS--GSSMMPGVAG--------GSSALTSPQCLGQQAFAEGGAN--------KGYV 104
            P G P   G    PG  G        G      P+  G+  FA  G          KG +
Sbjct: 714  PKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK--GEPGFALPGPPGPPGLPGFKGAL 771

Query: 105  QQGVYSRGGYPGAPG--FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA 162
              G     G+PG PG    TG  G PG  G      +P            V         
Sbjct: 772  --GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGI 829

Query: 163  TATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP 221
                    L     ++    G  G  G        + G P  P  P  + P G  G+ G 
Sbjct: 830  PGPIGQPGLHGIPGEK----GDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGK 885

Query: 222  SGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYPGQQYLQ 280
            +G S           M P            PGPP    +P R GV         G   LQ
Sbjct: 886  AGASGFPGTKGEMGMMGP------------PGPPGPLGIPGRSGVPG-----LKGDDGLQ 928

Query: 281  GGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGL----HYKPTRSI 336
            G    P       S G+P  P P  PG   P   G       PG  G+      K  + +
Sbjct: 929  GQPGLPGPTGEKGSKGEPGLPGP--PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGL 986

Query: 337  PGYPSSP----LPGNPTPP 351
            PG P  P     PG P PP
Sbjct: 987  PGDPGQPGLSGQPGLPGPP 1005



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 51/169 (30%), Positives = 58/169 (34%), Gaps = 30/169 (17%)

Query: 703 PFAPLQP--PSVPAPSDYPGQGSSFL----GPGTFPE-SFPPTTPSTPTLA--EFTPGPP 753
           P  P QP  P +P     PG     L    GP  FP    PP  P TP     E  PGPP
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742

Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
                   P   L        LP      G L P  + G PG        PPGP      
Sbjct: 743 GFPGPKGEPGFALPGPPGPPGLPGFK---GALGPKGDRGFPG--------PPGP------ 785

Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 862
           P       L     GP G++  +   G MGPP + G G    P    +P
Sbjct: 786 PGRTGLDGLP----GPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830



 Score = 42.7 bits (99), Expect = 0.001
 Identities = 94/402 (23%), Positives = 121/402 (30%), Gaps = 92/402 (22%)

Query: 6   PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA- 64
           P  P LP  P  DG+   + +P                     G   +    G+P  P  
Sbjct: 101 PGTPGLPGMPGHDGAPGPQGIPGCN------------------GTKGERGFPGSPGFPGL 142

Query: 65  GSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQ----QGVYSRGGYPG--AP 118
             P G   +PG+ G   ++      G +       N GY      QG+    G PG   P
Sbjct: 143 QGPPGPPGIPGMKGEPGSIIMSSLPGPKG------NPGYPGPPGIQGLPGPTGIPGPIGP 196

Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
               G  G PG  GLP        +F                      +    Q++    
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISE---QKRPIDV 253

Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMN-----PTGIGGVMGPSGLSPLAMNPTR 233
             Q G  G             G RGP  P G+      P G  G  G  G       P +
Sbjct: 254 EFQKGDQGLP-----------GDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGK 302

Query: 234 AA--------GMT--PLYAGQ--------RLPQHGYPGPPQAQPLPRQGVKRTYSEV--- 272
                     G+   P Y G+        +    G PGPP    +PR G   T  E    
Sbjct: 303 DGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPP-GLVIPRPGTGITIGEKGNI 361

Query: 273 -YPGQQYLQGGQYAPSTAQFAPSPGQP------PAPSPSYPGHRLPLQQGMTQSLSVPGP 325
             PG    +G +  P        PG P      P   P +PG R          +S+PGP
Sbjct: 362 GLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGP 421

Query: 326 TGLHYKPTRSIPGYPSSPLPGNPT-----------PPMTPSS 356
            GL  +P    PG P  P P  P            PP  P S
Sbjct: 422 PGLDGQP--GAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGS 461



 Score = 42.7 bits (99), Expect = 0.001
 Identities = 63/219 (28%), Positives = 71/219 (32%), Gaps = 35/219 (15%)

Query: 694  IAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPG 751
            I+++G    P  P   P +P     PG   S   PG       P     P L  F  TPG
Sbjct: 1070 ISSIGLPGLP-GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG 1128

Query: 752  PPPISYQSDIPSSL-LTSEKSTAC---LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP 807
            PP     S  P +  L  E         P Q  P G        G PG      G P  P
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-PAGQKGEPGQP 1187

Query: 808  QLHHSNPP--PASRQSLGQASL----------GPTGELAFSPATGVMGPPSMSGAGEAPE 855
               +  PP  P      G   L          GP GE  F    GV GPP   G   +P 
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG---SPG 1244

Query: 856  PALD------------LLPELTNPDELLSYLGPPDLPTN 882
            PAL+              P  T    L    GPP LP N
Sbjct: 1245 PALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGN 1283



 Score = 42.0 bits (97), Expect = 0.003
 Identities = 52/193 (26%), Positives = 63/193 (32%), Gaps = 42/193 (21%)

Query: 696 ALGPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP 753
           A GP   P  P  P  P  P     PG   +F  PG   +     +P  P L    PG P
Sbjct: 522 ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF--PGMKGDKGELGSPGAPGL----PGLP 575

Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
               Q  +P   L   K     P  +   G   P  NPG PGL                 
Sbjct: 576 GTPGQDGLPG--LPGPKGE---PGGITFKGERGPPGNPGLPGL----------------- 613

Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSY 873
             P +   +G    GP G +      GV G P   G    P P  D       P + ++ 
Sbjct: 614 --PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPG---IPGPKGD-------PGQTITQ 661

Query: 874 LGPPDLPTNNNDD 886
            G P LP N   D
Sbjct: 662 PGKPGLPGNPGRD 674



 Score = 41.6 bits (96), Expect = 0.003
 Identities = 55/206 (26%), Positives = 71/206 (34%), Gaps = 28/206 (13%)

Query: 699  PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPES--FPPTTPSTPTLAEFTPGPPPIS 756
            PGA    P+ PP  P     PG+  +   PGT  E     P  P  P       G P + 
Sbjct: 868  PGAP--GPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922

Query: 757  Y------QSDIPSSLLTSEKSTACLPSQMAPAGHLDPT--------HNPGTPGLHTSNLG 802
                   Q  +P    T EK +   P    P G +DP           PG PG+    + 
Sbjct: 923  GDDGLQGQPGLPGP--TGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI--PGVS 978

Query: 803  APPGPQLHHSNP--PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA-GEAPEPALD 859
             P G Q    +P  P  S Q       GP G        G++GPP + G  G+   P   
Sbjct: 979  GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQ 1038

Query: 860  LLPELTNPDELLSYLGPPDLPTNNND 885
             +     P  +    G P LP    D
Sbjct: 1039 GVEGPPGPSGVPGQPGSPGLPGQKGD 1064



 Score = 40.0 bits (92), Expect = 0.010
 Identities = 53/200 (26%), Positives = 62/200 (31%), Gaps = 33/200 (16%)

Query: 699 PGAAPFAPLQPP-----------------SVPAPSDYPGQGSSFLGPGTFPESFPPTTPS 741
           PGAA   P  PP                 S+P P    GQ  +   PG    + P   PS
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPS 447

Query: 742 TPTLAEFTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 800
                   PGPP       +     +  +K   C        G   P   PG PG     
Sbjct: 448 DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCF--NCIGTGISGPPGQPGLPG----- 500

Query: 801 LGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDL 860
           L  PPG     S   P  +   GQA  G TG        G  G P   G+   P   L  
Sbjct: 501 LPGPPG-----SLGFPGQKGEKGQA--GATGPKGLPGIPGAPGAPGFPGSKGEPGDIL-T 552

Query: 861 LPELTNPDELLSYLGPPDLP 880
            P +      L   G P LP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572



 Score = 37.0 bits (84), Expect = 0.082
 Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 25/177 (14%)

Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 768
           P +P    YPG+       G   ++ PP  P    L    PG    I  + +I    L  
Sbjct: 312 PGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPG---LVIPRPGTGITIGEKGNIGLPGLPG 368

Query: 769 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 828
           EK     P    P         PG PG   + +  PPGP        P  R   G    G
Sbjct: 369 EKGERGFPGIQGP---------PGLPGPPGAAVMGPPGPPGF-----PGERGQKGDE--G 412

Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNND 885
           P G ++     G+ G P   G    P PA   +P    P + +   GPP  P +  D
Sbjct: 413 PPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGPPGSPGD 464



 Score = 34.7 bits (78), Expect = 0.41
 Identities = 35/143 (24%), Positives = 41/143 (28%), Gaps = 36/143 (25%)

Query: 710  PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTP---TLAEFTPGPPPISYQSDIPSSLL 766
            P +  PS  PG       PG      PP  P       + +   GPP I  Q  +     
Sbjct: 1338 PGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG--- 1394

Query: 767  TSEKSTACLPSQMAPAGHLDPTHNPGTPGLH----------------------TSNLGAP 804
                    LP    P G   PT  PG PG +                      T  L  P
Sbjct: 1395 --------LPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1446

Query: 805  PGPQLHHSNPPPASRQSLGQASL 827
            PGP      P P    S+    L
Sbjct: 1447 PGPDGLQGPPGPPGTSSVAHGFL 1469


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
           sapiens]
          Length = 1685

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 77/315 (24%), Positives = 94/315 (29%), Gaps = 62/315 (19%)

Query: 62  GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
           GP G P     +PG+ G   +L  P   G++            Q G     G PG PG  
Sbjct: 491 GPPGQPG----LPGLPGPPGSLGFPGQKGEKG-----------QAGATGPKGLPGIPG-- 533

Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
                 PG  G P     P    T            +              +     L  
Sbjct: 534 -----APGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG 588

Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAG---MNPTGIG--GVMGPSGLSPLAMNPTRAAG 236
                 G +F  +    G P  P +P     M P G G  G +G  G+  +A NP     
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNP----- 643

Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
                        G PG P  +  P Q + +      PG     G    P        PG
Sbjct: 644 -------------GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690

Query: 297 QPPAPS----PSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTR----SIPGYPSSP----- 343
            P  P     P  PG  LP   G      +PGP G    P R      PG P  P     
Sbjct: 691 LPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGE 750

Query: 344 ----LPGNPTPPMTP 354
               LPG P PP  P
Sbjct: 751 PGFALPGPPGPPGLP 765



 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 85/332 (25%), Positives = 112/332 (33%), Gaps = 62/332 (18%)

Query: 57  LGNPMGPAGS---PSGSSMMPGVAGGSSALTSPQCLGQQAFA--EGGANKGYVQQGVYSR 111
           L  P GPAG    PS     PG  G   +       G+Q     +G      +  G+   
Sbjct: 433 LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGP 492

Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
            G PG PG      G PG LG P             A A           A         
Sbjct: 493 PGQPGLPGLP----GPPGSLGFPGQKGEKGQ-----AGATGPKGLPGIPGAPGAPGFPGS 543

Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
           + +    L+  G  G      S     G P  P +P      G+ G+ GP G        
Sbjct: 544 KGEPGDILTFPGMKGDKGELGSP----GAPGLPGLPGTPGQDGLPGLPGPKG-------- 591

Query: 232 TRAAGMTPLYAGQRLP--QHGYPG-PPQAQPLPRQGVKRTYSEVYP-GQQYLQGGQYAPS 287
               G+T  + G+R P    G PG P    P+   G    +    P G++ +QG      
Sbjct: 592 -EPGGIT--FKGERGPPGNPGLPGLPGNIGPMGPPG----FGPPGPVGEKGIQG------ 638

Query: 288 TAQFAPSPGQPPAPSP--------SYPGH-RLPLQQGMTQSLSVPGPTGLHYKP------ 332
               A +PGQP  P P        + PG   LP   G    + +PG  GL  +P      
Sbjct: 639 ---VAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIP 695

Query: 333 -TRSIPGYPSSPLPGNPTPPMTPSSSVPYMSP 363
            ++  PG P   LPG P P   P    P  +P
Sbjct: 696 GSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAP 727



 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 87/343 (25%), Positives = 113/343 (32%), Gaps = 59/343 (17%)

Query: 60   PMGPAGSP-----SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGY 114
            P+GP GSP     +G+S  PG  G    +  P   G           G   +G     G 
Sbjct: 873  PIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGL--KGDDGLQGQ 930

Query: 115  PGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEK 174
            PG PG  TG  G  G  GLP        +   +               +       L   
Sbjct: 931  PGLPG-PTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGD 989

Query: 175  QSQELSQYGAMGAGQSFNSQFLQHGGPRG----PSVPAGMNPTGIGGVMGPSGL-SPLAM 229
              Q          G S         GP+G    P  P  + P G+ G +G  G   P  +
Sbjct: 990  PGQP---------GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGV 1040

Query: 230  -NPTRAAGM-----TPLYAGQR----------LPQHGYPGPPQAQPLP----RQGVKRTY 269
              P   +G+     +P   GQ+          +   G PGP     LP      G+K + 
Sbjct: 1041 EGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSV 1100

Query: 270  SEV-YPGQQYLQGGQYAPSTAQFAPSPGQP-------PAPSPSYPGHRLPLQQGMTQSLS 321
             +   PG     G +  P    F  +PG P       P  +P  PG   P+  G      
Sbjct: 1101 GDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGG--GHPG 1158

Query: 322  VPGPTGLHYKPTR-SIP------GYPSSPLPGNPTPPMTPSSS 357
             PGP G   KP +  IP      G P  P  GNP PP  P  S
Sbjct: 1159 QPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLS 1201



 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 97/360 (26%), Positives = 121/360 (33%), Gaps = 51/360 (14%)

Query: 6    PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
            P  P LP  P   G   +   P         G   +       G   Q    GNP GP G
Sbjct: 1139 PGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG-FGNP-GPPG 1196

Query: 66   SPS-----GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG- 119
             P      G   +PG+ G +  L  P+  G+  F       G+   GV    G PG+PG 
Sbjct: 1197 LPGLSGQKGDGGLPGIPG-NPGLPGPK--GEPGF------HGF--PGVQGPPGPPGSPGP 1245

Query: 120  FTTGYAGGPGGLGLPSHAARPSTDFTQAAAA-AAVAAAAATATATATATVAALQEKQSQE 178
               G  G PG  G P     P  +          +              +  L+  Q   
Sbjct: 1246 ALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPP 1305

Query: 179  LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMT 238
              Q      G   N      G P  P  P    P+G+ G  GP G  P  + P    G+ 
Sbjct: 1306 GLQGNPGRPG--LNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEG-EPGLIGPPGPPGL- 1361

Query: 239  PLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP 298
            P  +GQ +   G  GPP        G+        PGQ  L+ G   P   Q  P P  P
Sbjct: 1362 PGPSGQSIIIKGDAGPP--------GI--------PGQPGLK-GLPGPQGPQGLPGPTGP 1404

Query: 299  PAPSPSYPGHR-LPLQQGMTQSLSVPGPTGLHYKP-TRSIPGYPS-SPLPGNPTPPMTPS 355
            P      PG   LP   G   +    G  GL  +P TR + G P    L G P PP T S
Sbjct: 1405 PGD----PGRNGLP---GFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSS 1457



 Score = 48.1 bits (113), Expect = 4e-05
 Identities = 81/334 (24%), Positives = 104/334 (31%), Gaps = 50/334 (14%)

Query: 62   GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYV-QQGVYSRGGYPGAPGF 120
            G  G P G S  PG+ G      +P   GQ         KG +   G     G  G PG 
Sbjct: 988  GDPGQP-GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG- 1045

Query: 121  TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
             +G  G PG  GLP            +     +                 ++      + 
Sbjct: 1046 PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGS----VG 1101

Query: 181  QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
              G  G   +  ++    G P  P  P    P G  G+ GP G      NP       P+
Sbjct: 1102 DPGLPGLPGTPGAK----GQPGLPGFPGTPGPPGPKGISGPPG------NPGLPGEPGPV 1151

Query: 241  YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
              G      G+PG    QP P            PG++   G    P  A     PGQP  
Sbjct: 1152 GGG------GHPG----QPGP------------PGEKGKPGQDGIPGPAGQKGEPGQPGF 1189

Query: 301  PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP----LPGNPTPPMTPSS 356
             +P  PG  LP   G      +PG  G        +PG    P     PG   PP  P S
Sbjct: 1190 GNPGPPG--LPGLSGQKGDGGLPGIPG-----NPGLPGPKGEPGFHGFPGVQGPPGPPGS 1242

Query: 357  SVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSG 390
              P +   +    P  P  +P L      P   G
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPG 1276



 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 54/206 (26%), Positives = 69/206 (33%), Gaps = 52/206 (25%)

Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQ 758
           PG     P  PP +P P   PG       PG   +  PP            PGPP     
Sbjct: 816 PGIGVQGPPGPPGIPGPIGQPGLHGI---PGEKGDPGPPGLD--------VPGPP----- 859

Query: 759 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN----------LGAPPGPQ 808
                     E+ +  +P    P G   P  +PG PG   ++          +  PPGP 
Sbjct: 860 ---------GERGSPGIPGAPGPIG---PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907

Query: 809 LHHSNPPPASRQSL-------GQASL-GPTGELAFSPATGVMGPPS------MSGAGEAP 854
                P  +    L       GQ  L GPTGE       G+ GPP       +   GE  
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967

Query: 855 EPALDLLPELTNPDELLSYLGPPDLP 880
           EP L  +P ++ P       G P  P
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQP 993



 Score = 47.4 bits (111), Expect = 6e-05
 Identities = 100/410 (24%), Positives = 123/410 (30%), Gaps = 76/410 (18%)

Query: 6   PMKPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
           P +P LP  P   GS  +   +    Q  AT P G       + G+  A  +   G P G
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKG-------LPGIPGAPGAP--GFP-G 542

Query: 63  PAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTT 122
             G P      PG+ G    L SP   G              Q G+    G  G PG  T
Sbjct: 543 SKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPG-----QDGLPGLPGPKGEPGGIT 597

Query: 123 -----GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
                G  G PG  GLP +                       A       +   +    Q
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQ 657

Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAM-NPTRAAG 236
            ++Q G  G   +        G P  P +P      GI G  G  G+  + +  P    G
Sbjct: 658 TITQPGKPGLPGNPGRDG-DVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKG 716

Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
                        G PGPP A   P     R   E  PG     G +  P  A   P PG
Sbjct: 717 FP-----------GIPGPPGAPGTPG----RIGLEGPPGPPGFPGPKGEPGFALPGP-PG 760

Query: 297 QPPAPS----------------PSYPGHR----LPLQQGMTQSLSVPGPTGLHYKPTRSI 336
            P  P                 P  PG      LP  +G       PGP G    P   +
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGV 820

Query: 337 PGYPSSP-------------LPGNPTPPMTPSSSVPYMSPNQEVKSPFLP 373
            G P  P             +PG    P  P   VP   P  E  SP +P
Sbjct: 821 QGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVP--GPPGERGSPGIP 868



 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 74/299 (24%), Positives = 93/299 (31%), Gaps = 79/299 (26%)

Query: 62  GPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
           GP G P   G+  +PG+ G   A   PQ +        G N      G     G+PG+PG
Sbjct: 93  GPPGLPGFPGTPGLPGMPGHDGA-PGPQGIP-------GCN------GTKGERGFPGSPG 138

Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
           F  G  G PG  G+P     P +    +                                
Sbjct: 139 FP-GLQGPPGPPGIPGMKGEPGSIIMSSLP------------------------------ 167

Query: 180 SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTP 239
              G  G            G P  P +     PTGI G +GP G  P  M P    G+  
Sbjct: 168 ---GPKG----------NPGYPGPPGIQGLPGPTGIPGPIGPPG-PPGLMGPPGPPGLPG 213

Query: 240 LYAGQRL---------PQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQ 290
                 L          + G  GPP       +  +    E   G Q L G +  P    
Sbjct: 214 PKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPG 273

Query: 291 FAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP-LPGNP 348
               PG PP       G     +QG       PG  G + +P   IPG P  P  PG P
Sbjct: 274 IRGPPG-PPGGEKGEKG-----EQGEPGKRGKPGKDGENGQP--GIPGLPGDPGYPGEP 324



 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 58/192 (30%), Positives = 73/192 (38%), Gaps = 21/192 (10%)

Query: 698 GPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 755
           GP   P  P  P  P +P     PG        GT  E   P +P  P L +  PGPP I
Sbjct: 93  GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPGI 151

Query: 756 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLG--APPGPQ--LHH 811
                 P S++ S      LP      G+  P    G PG  T   G   PPGP   +  
Sbjct: 152 PGMKGEPGSIIMSS-----LPGPKGNPGYPGPPGIQGLPG-PTGIPGPIGPPGPPGLMGP 205

Query: 812 SNPP--PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 869
             PP  P  + ++G    GP GE       G+ GPP   G     +  +D+  E    D+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKG---EQGLQGPPGPPGQISEQKRPIDV--EFQKGDQ 260

Query: 870 -LLSYLGPPDLP 880
            L    GPP  P
Sbjct: 261 GLPGDRGPPGPP 272



 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 97/379 (25%), Positives = 116/379 (30%), Gaps = 68/379 (17%)

Query: 6    PMKPALPPAPHGDGSFAYES---VPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
            P KP LP  P  DG         +P Q       GS      + G+G       L  P G
Sbjct: 662  PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE-PGIPGIG-------LPGPPG 713

Query: 63   PAGSPS--GSSMMPGVAG--------GSSALTSPQCLGQQAFAEGGAN--------KGYV 104
            P G P   G    PG  G        G      P+  G+  FA  G          KG +
Sbjct: 714  PKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK--GEPGFALPGPPGPPGLPGFKGAL 771

Query: 105  QQGVYSRGGYPGAPG--FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA 162
              G     G+PG PG    TG  G PG  G      +P            V         
Sbjct: 772  --GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGI 829

Query: 163  TATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP 221
                    L     ++    G  G  G        + G P  P  P  + P G  G+ G 
Sbjct: 830  PGPIGQPGLHGIPGEK----GDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGK 885

Query: 222  SGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYPGQQYLQ 280
            +G S           M P            PGPP    +P R GV         G   LQ
Sbjct: 886  AGASGFPGTKGEMGMMGP------------PGPPGPLGIPGRSGVPG-----LKGDDGLQ 928

Query: 281  GGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGL----HYKPTRSI 336
            G    P       S G+P  P P  PG   P   G       PG  G+      K  + +
Sbjct: 929  GQPGLPGPTGEKGSKGEPGLPGP--PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGL 986

Query: 337  PGYPSSP----LPGNPTPP 351
            PG P  P     PG P PP
Sbjct: 987  PGDPGQPGLSGQPGLPGPP 1005



 Score = 44.3 bits (103), Expect = 5e-04
 Identities = 63/219 (28%), Positives = 72/219 (32%), Gaps = 41/219 (18%)

Query: 694  IAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPG 751
            I+++G    P  P   P +P     PG   S   PG       P     P L  F  TPG
Sbjct: 1070 ISSIGLPGLP-GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG 1128

Query: 752  PPPISYQSDIPSSL-LTSEKSTAC---LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP 807
            PP     S  P +  L  E         P Q  P G        G PG      G P  P
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-PAGQKGEPGQP 1187

Query: 808  QLHHSNPP--PASRQSLGQASL----------GPTGELAFSPATGVMGPPSMSGAGEAPE 855
               +  PP  P      G   L          GP GE  F    GV GPP   G   +P 
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG---SPG 1244

Query: 856  PALD------------LLPELTNPDELLSYLGPPDLPTN 882
            PAL+              P L  P+      GPP LP N
Sbjct: 1245 PALEGPKGNPGPQGPPGRPGLPGPE------GPPGLPGN 1277



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 51/169 (30%), Positives = 58/169 (34%), Gaps = 30/169 (17%)

Query: 703 PFAPLQP--PSVPAPSDYPGQGSSFL----GPGTFPE-SFPPTTPSTPTLA--EFTPGPP 753
           P  P QP  P +P     PG     L    GP  FP    PP  P TP     E  PGPP
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742

Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
                   P   L        LP      G L P  + G PG        PPGP      
Sbjct: 743 GFPGPKGEPGFALPGPPGPPGLPGFK---GALGPKGDRGFPG--------PPGP------ 785

Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 862
           P       L     GP G++  +   G MGPP + G G    P    +P
Sbjct: 786 PGRTGLDGLP----GPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830



 Score = 42.7 bits (99), Expect = 0.001
 Identities = 94/402 (23%), Positives = 121/402 (30%), Gaps = 92/402 (22%)

Query: 6   PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA- 64
           P  P LP  P  DG+   + +P                     G   +    G+P  P  
Sbjct: 101 PGTPGLPGMPGHDGAPGPQGIPGCN------------------GTKGERGFPGSPGFPGL 142

Query: 65  GSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQ----QGVYSRGGYPG--AP 118
             P G   +PG+ G   ++      G +       N GY      QG+    G PG   P
Sbjct: 143 QGPPGPPGIPGMKGEPGSIIMSSLPGPKG------NPGYPGPPGIQGLPGPTGIPGPIGP 196

Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
               G  G PG  GLP        +F                      +    Q++    
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISE---QKRPIDV 253

Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMN-----PTGIGGVMGPSGLSPLAMNPTR 233
             Q G  G             G RGP  P G+      P G  G  G  G       P +
Sbjct: 254 EFQKGDQGLP-----------GDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGK 302

Query: 234 AA--------GMT--PLYAGQ--------RLPQHGYPGPPQAQPLPRQGVKRTYSEV--- 272
                     G+   P Y G+        +    G PGPP    +PR G   T  E    
Sbjct: 303 DGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPP-GLVIPRPGTGITIGEKGNI 361

Query: 273 -YPGQQYLQGGQYAPSTAQFAPSPGQP------PAPSPSYPGHRLPLQQGMTQSLSVPGP 325
             PG    +G +  P        PG P      P   P +PG R          +S+PGP
Sbjct: 362 GLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGP 421

Query: 326 TGLHYKPTRSIPGYPSSPLPGNPT-----------PPMTPSS 356
            GL  +P    PG P  P P  P            PP  P S
Sbjct: 422 PGLDGQP--GAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGS 461



 Score = 42.0 bits (97), Expect = 0.003
 Identities = 52/193 (26%), Positives = 63/193 (32%), Gaps = 42/193 (21%)

Query: 696 ALGPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP 753
           A GP   P  P  P  P  P     PG   +F  PG   +     +P  P L    PG P
Sbjct: 522 ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF--PGMKGDKGELGSPGAPGL----PGLP 575

Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
               Q  +P   L   K     P  +   G   P  NPG PGL                 
Sbjct: 576 GTPGQDGLPG--LPGPKGE---PGGITFKGERGPPGNPGLPGL----------------- 613

Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSY 873
             P +   +G    GP G +      GV G P   G    P P  D       P + ++ 
Sbjct: 614 --PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPG---IPGPKGD-------PGQTITQ 661

Query: 874 LGPPDLPTNNNDD 886
            G P LP N   D
Sbjct: 662 PGKPGLPGNPGRD 674



 Score = 41.6 bits (96), Expect = 0.003
 Identities = 55/206 (26%), Positives = 71/206 (34%), Gaps = 28/206 (13%)

Query: 699  PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPES--FPPTTPSTPTLAEFTPGPPPIS 756
            PGA    P+ PP  P     PG+  +   PGT  E     P  P  P       G P + 
Sbjct: 868  PGAP--GPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922

Query: 757  Y------QSDIPSSLLTSEKSTACLPSQMAPAGHLDPT--------HNPGTPGLHTSNLG 802
                   Q  +P    T EK +   P    P G +DP           PG PG+    + 
Sbjct: 923  GDDGLQGQPGLPGP--TGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI--PGVS 978

Query: 803  APPGPQLHHSNP--PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA-GEAPEPALD 859
             P G Q    +P  P  S Q       GP G        G++GPP + G  G+   P   
Sbjct: 979  GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQ 1038

Query: 860  LLPELTNPDELLSYLGPPDLPTNNND 885
             +     P  +    G P LP    D
Sbjct: 1039 GVEGPPGPSGVPGQPGSPGLPGQKGD 1064



 Score = 40.0 bits (92), Expect = 0.010
 Identities = 53/200 (26%), Positives = 62/200 (31%), Gaps = 33/200 (16%)

Query: 699 PGAAPFAPLQPP-----------------SVPAPSDYPGQGSSFLGPGTFPESFPPTTPS 741
           PGAA   P  PP                 S+P P    GQ  +   PG    + P   PS
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPS 447

Query: 742 TPTLAEFTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 800
                   PGPP       +     +  +K   C        G   P   PG PG     
Sbjct: 448 DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCF--NCIGTGISGPPGQPGLPG----- 500

Query: 801 LGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDL 860
           L  PPG     S   P  +   GQA  G TG        G  G P   G+   P   L  
Sbjct: 501 LPGPPG-----SLGFPGQKGEKGQA--GATGPKGLPGIPGAPGAPGFPGSKGEPGDIL-T 552

Query: 861 LPELTNPDELLSYLGPPDLP 880
            P +      L   G P LP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572



 Score = 37.0 bits (84), Expect = 0.082
 Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 25/177 (14%)

Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 768
           P +P    YPG+       G   ++ PP  P    L    PG    I  + +I    L  
Sbjct: 312 PGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPG---LVIPRPGTGITIGEKGNIGLPGLPG 368

Query: 769 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 828
           EK     P    P         PG PG   + +  PPGP        P  R   G    G
Sbjct: 369 EKGERGFPGIQGP---------PGLPGPPGAAVMGPPGPPGF-----PGERGQKGDE--G 412

Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNND 885
           P G ++     G+ G P   G    P PA   +P    P + +   GPP  P +  D
Sbjct: 413 PPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGPPGSPGD 464



 Score = 34.7 bits (78), Expect = 0.41
 Identities = 35/143 (24%), Positives = 41/143 (28%), Gaps = 36/143 (25%)

Query: 710  PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTP---TLAEFTPGPPPISYQSDIPSSLL 766
            P +  PS  PG       PG      PP  P       + +   GPP I  Q  +     
Sbjct: 1332 PGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG--- 1388

Query: 767  TSEKSTACLPSQMAPAGHLDPTHNPGTPGLH----------------------TSNLGAP 804
                    LP    P G   PT  PG PG +                      T  L  P
Sbjct: 1389 --------LPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1440

Query: 805  PGPQLHHSNPPPASRQSLGQASL 827
            PGP      P P    S+    L
Sbjct: 1441 PGPDGLQGPPGPPGTSSVAHGFL 1463


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
           sapiens]
          Length = 1688

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 77/315 (24%), Positives = 94/315 (29%), Gaps = 62/315 (19%)

Query: 62  GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
           GP G P     +PG+ G   +L  P   G++            Q G     G PG PG  
Sbjct: 491 GPPGQPG----LPGLPGPPGSLGFPGQKGEKG-----------QAGATGPKGLPGIPG-- 533

Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
                 PG  G P     P    T            +              +     L  
Sbjct: 534 -----APGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG 588

Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAG---MNPTGIG--GVMGPSGLSPLAMNPTRAAG 236
                 G +F  +    G P  P +P     M P G G  G +G  G+  +A NP     
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNP----- 643

Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
                        G PG P  +  P Q + +      PG     G    P        PG
Sbjct: 644 -------------GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690

Query: 297 QPPAPS----PSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTR----SIPGYPSSP----- 343
            P  P     P  PG  LP   G      +PGP G    P R      PG P  P     
Sbjct: 691 LPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGE 750

Query: 344 ----LPGNPTPPMTP 354
               LPG P PP  P
Sbjct: 751 PGFALPGPPGPPGLP 765



 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 85/332 (25%), Positives = 112/332 (33%), Gaps = 62/332 (18%)

Query: 57  LGNPMGPAGS---PSGSSMMPGVAGGSSALTSPQCLGQQAFA--EGGANKGYVQQGVYSR 111
           L  P GPAG    PS     PG  G   +       G+Q     +G      +  G+   
Sbjct: 433 LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGP 492

Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
            G PG PG      G PG LG P             A A           A         
Sbjct: 493 PGQPGLPGLP----GPPGSLGFPGQKGEKGQ-----AGATGPKGLPGIPGAPGAPGFPGS 543

Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
           + +    L+  G  G      S     G P  P +P      G+ G+ GP G        
Sbjct: 544 KGEPGDILTFPGMKGDKGELGSP----GAPGLPGLPGTPGQDGLPGLPGPKG-------- 591

Query: 232 TRAAGMTPLYAGQRLP--QHGYPG-PPQAQPLPRQGVKRTYSEVYP-GQQYLQGGQYAPS 287
               G+T  + G+R P    G PG P    P+   G    +    P G++ +QG      
Sbjct: 592 -EPGGIT--FKGERGPPGNPGLPGLPGNIGPMGPPG----FGPPGPVGEKGIQG------ 638

Query: 288 TAQFAPSPGQPPAPSP--------SYPGH-RLPLQQGMTQSLSVPGPTGLHYKP------ 332
               A +PGQP  P P        + PG   LP   G    + +PG  GL  +P      
Sbjct: 639 ---VAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIP 695

Query: 333 -TRSIPGYPSSPLPGNPTPPMTPSSSVPYMSP 363
            ++  PG P   LPG P P   P    P  +P
Sbjct: 696 GSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAP 727



 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 82/335 (24%), Positives = 105/335 (31%), Gaps = 53/335 (15%)

Query: 62   GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYV-QQGVYSRGGYPGAPGF 120
            G  G P G S  PG+ G      +P   GQ         KG +   G     G  G PG 
Sbjct: 988  GDPGQP-GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG- 1045

Query: 121  TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
             +G  G PG  GLP            +     +                 ++      + 
Sbjct: 1046 PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGS----VG 1101

Query: 181  QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
              G  G   +  ++    G P  P  P    P G  G+ GP G      NP       P+
Sbjct: 1102 DPGLPGLPGTPGAK----GQPGLPGFPGTPGPPGPKGISGPPG------NPGLPGEPGPV 1151

Query: 241  YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
              G      G+PG    QP P            PG++   G    P  A     PGQP  
Sbjct: 1152 GGG------GHPG----QPGP------------PGEKGKPGQDGIPGPAGQKGEPGQPGF 1189

Query: 301  PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP----LPGNPTPPMTPSS 356
             +P  PG  LP   G      +PG  G        +PG    P     PG   PP  P S
Sbjct: 1190 GNPGPPG--LPGLSGQKGDGGLPGIPG-----NPGLPGPKGEPGFHGFPGVQGPPGPPGS 1242

Query: 357  SVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGP 391
              P +   +    P  P  +P    L   P   GP
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGFQGL---PGPEGP 1274



 Score = 48.5 bits (114), Expect = 3e-05
 Identities = 98/368 (26%), Positives = 121/368 (32%), Gaps = 64/368 (17%)

Query: 6    PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
            P  P LP  P   G   +   P         G   +       G   Q    GNP GP G
Sbjct: 1139 PGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG-FGNP-GPPG 1196

Query: 66   SPS-----GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
             P      G   +PG+ G +  L  P+  G+  F       G+   GV    G PG+PG 
Sbjct: 1197 LPGLSGQKGDGGLPGIPG-NPGLPGPK--GEPGF------HGF--PGVQGPPGPPGSPGP 1245

Query: 121  TT----------GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAA 170
                        G  G PG  GLP     P            +              +  
Sbjct: 1246 ALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLP-----GNGGIKGEKGNPGQPGLPGLPG 1300

Query: 171  LQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMN 230
            L+  Q     Q      G   N      G P  P  P    P+G+ G  GP G  P  + 
Sbjct: 1301 LKGDQGPPGLQGNPGRPG--LNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEG-EPGLIG 1357

Query: 231  PTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQ 290
            P    G+ P  +GQ +   G  GPP        G+        PGQ  L+ G   P   Q
Sbjct: 1358 PPGPPGL-PGPSGQSIIIKGDAGPP--------GI--------PGQPGLK-GLPGPQGPQ 1399

Query: 291  FAPSPGQPPAPSPSYPGHR-LPLQQGMTQSLSVPGPTGLHYKP-TRSIPGYPS-SPLPGN 347
              P P  PP      PG   LP   G   +    G  GL  +P TR + G P    L G 
Sbjct: 1400 GLPGPTGPPGD----PGRNGLP---GFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGP 1452

Query: 348  PTPPMTPS 355
            P PP T S
Sbjct: 1453 PGPPGTSS 1460



 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 54/206 (26%), Positives = 69/206 (33%), Gaps = 52/206 (25%)

Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQ 758
           PG     P  PP +P P   PG       PG   +  PP            PGPP     
Sbjct: 816 PGIGVQGPPGPPGIPGPIGQPGLHGI---PGEKGDPGPPGLD--------VPGPP----- 859

Query: 759 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN----------LGAPPGPQ 808
                     E+ +  +P    P G   P  +PG PG   ++          +  PPGP 
Sbjct: 860 ---------GERGSPGIPGAPGPIG---PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907

Query: 809 LHHSNPPPASRQSL-------GQASL-GPTGELAFSPATGVMGPPS------MSGAGEAP 854
                P  +    L       GQ  L GPTGE       G+ GPP       +   GE  
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967

Query: 855 EPALDLLPELTNPDELLSYLGPPDLP 880
           EP L  +P ++ P       G P  P
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQP 993



 Score = 47.4 bits (111), Expect = 6e-05
 Identities = 100/410 (24%), Positives = 123/410 (30%), Gaps = 76/410 (18%)

Query: 6   PMKPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
           P +P LP  P   GS  +   +    Q  AT P G       + G+  A  +   G P G
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKG-------LPGIPGAPGAP--GFP-G 542

Query: 63  PAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTT 122
             G P      PG+ G    L SP   G              Q G+    G  G PG  T
Sbjct: 543 SKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPG-----QDGLPGLPGPKGEPGGIT 597

Query: 123 -----GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
                G  G PG  GLP +                       A       +   +    Q
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQ 657

Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAM-NPTRAAG 236
            ++Q G  G   +        G P  P +P      GI G  G  G+  + +  P    G
Sbjct: 658 TITQPGKPGLPGNPGRDG-DVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKG 716

Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
                        G PGPP A   P     R   E  PG     G +  P  A   P PG
Sbjct: 717 FP-----------GIPGPPGAPGTPG----RIGLEGPPGPPGFPGPKGEPGFALPGP-PG 760

Query: 297 QPPAPS----------------PSYPGHR----LPLQQGMTQSLSVPGPTGLHYKPTRSI 336
            P  P                 P  PG      LP  +G       PGP G    P   +
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGV 820

Query: 337 PGYPSSP-------------LPGNPTPPMTPSSSVPYMSPNQEVKSPFLP 373
            G P  P             +PG    P  P   VP   P  E  SP +P
Sbjct: 821 QGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVP--GPPGERGSPGIP 868



 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 74/299 (24%), Positives = 93/299 (31%), Gaps = 79/299 (26%)

Query: 62  GPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
           GP G P   G+  +PG+ G   A   PQ +        G N      G     G+PG+PG
Sbjct: 93  GPPGLPGFPGTPGLPGMPGHDGA-PGPQGIP-------GCN------GTKGERGFPGSPG 138

Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
           F  G  G PG  G+P     P +    +                                
Sbjct: 139 FP-GLQGPPGPPGIPGMKGEPGSIIMSSLP------------------------------ 167

Query: 180 SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTP 239
              G  G            G P  P +     PTGI G +GP G  P  M P    G+  
Sbjct: 168 ---GPKG----------NPGYPGPPGIQGLPGPTGIPGPIGPPG-PPGLMGPPGPPGLPG 213

Query: 240 LYAGQRL---------PQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQ 290
                 L          + G  GPP       +  +    E   G Q L G +  P    
Sbjct: 214 PKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPG 273

Query: 291 FAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP-LPGNP 348
               PG PP       G     +QG       PG  G + +P   IPG P  P  PG P
Sbjct: 274 IRGPPG-PPGGEKGEKG-----EQGEPGKRGKPGKDGENGQP--GIPGLPGDPGYPGEP 324



 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 58/192 (30%), Positives = 73/192 (38%), Gaps = 21/192 (10%)

Query: 698 GPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 755
           GP   P  P  P  P +P     PG        GT  E   P +P  P L +  PGPP I
Sbjct: 93  GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPGI 151

Query: 756 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLG--APPGPQ--LHH 811
                 P S++ S      LP      G+  P    G PG  T   G   PPGP   +  
Sbjct: 152 PGMKGEPGSIIMSS-----LPGPKGNPGYPGPPGIQGLPG-PTGIPGPIGPPGPPGLMGP 205

Query: 812 SNPP--PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 869
             PP  P  + ++G    GP GE       G+ GPP   G     +  +D+  E    D+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKG---EQGLQGPPGPPGQISEQKRPIDV--EFQKGDQ 260

Query: 870 -LLSYLGPPDLP 880
            L    GPP  P
Sbjct: 261 GLPGDRGPPGPP 272



 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 97/379 (25%), Positives = 116/379 (30%), Gaps = 68/379 (17%)

Query: 6    PMKPALPPAPHGDGSFAYES---VPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
            P KP LP  P  DG         +P Q       GS      + G+G       L  P G
Sbjct: 662  PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE-PGIPGIG-------LPGPPG 713

Query: 63   PAGSPS--GSSMMPGVAG--------GSSALTSPQCLGQQAFAEGGAN--------KGYV 104
            P G P   G    PG  G        G      P+  G+  FA  G          KG +
Sbjct: 714  PKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK--GEPGFALPGPPGPPGLPGFKGAL 771

Query: 105  QQGVYSRGGYPGAPG--FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA 162
              G     G+PG PG    TG  G PG  G      +P            V         
Sbjct: 772  --GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGI 829

Query: 163  TATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP 221
                    L     ++    G  G  G        + G P  P  P  + P G  G+ G 
Sbjct: 830  PGPIGQPGLHGIPGEK----GDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGK 885

Query: 222  SGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYPGQQYLQ 280
            +G S           M P            PGPP    +P R GV         G   LQ
Sbjct: 886  AGASGFPGTKGEMGMMGP------------PGPPGPLGIPGRSGVPG-----LKGDDGLQ 928

Query: 281  GGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGL----HYKPTRSI 336
            G    P       S G+P  P P  PG   P   G       PG  G+      K  + +
Sbjct: 929  GQPGLPGPTGEKGSKGEPGLPGP--PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGL 986

Query: 337  PGYPSSP----LPGNPTPP 351
            PG P  P     PG P PP
Sbjct: 987  PGDPGQPGLSGQPGLPGPP 1005



 Score = 43.5 bits (101), Expect = 9e-04
 Identities = 56/198 (28%), Positives = 65/198 (32%), Gaps = 34/198 (17%)

Query: 698  GPGAAPFAPLQP--------PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFT 749
            GP   P  P +P        P  P P    G+      PG   +   P  P         
Sbjct: 1137 GPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGN----- 1191

Query: 750  PGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQL 809
            PGPP       +P   L+ +K    LP      G   P   PG  G     +  PPGP  
Sbjct: 1192 PGPP------GLPG--LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGF--PGVQGPPGPP- 1240

Query: 810  HHSNPPPASRQSLGQAS-LGPTGELAFSPATGVMGPPSMSG----AGEAPEPALDLLPEL 864
               +P PA     G     GP G   F    G  GPP + G     GE   P    LP L
Sbjct: 1241 --GSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGL 1298

Query: 865  TNPDELLSYLGPPDLPTN 882
                 L    GPP L  N
Sbjct: 1299 PG---LKGDQGPPGLQGN 1313



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 51/169 (30%), Positives = 58/169 (34%), Gaps = 30/169 (17%)

Query: 703 PFAPLQP--PSVPAPSDYPGQGSSFL----GPGTFPE-SFPPTTPSTPTLA--EFTPGPP 753
           P  P QP  P +P     PG     L    GP  FP    PP  P TP     E  PGPP
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742

Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
                   P   L        LP      G L P  + G PG        PPGP      
Sbjct: 743 GFPGPKGEPGFALPGPPGPPGLPGFK---GALGPKGDRGFPG--------PPGP------ 785

Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 862
           P       L     GP G++  +   G MGPP + G G    P    +P
Sbjct: 786 PGRTGLDGLP----GPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830



 Score = 42.7 bits (99), Expect = 0.001
 Identities = 94/402 (23%), Positives = 121/402 (30%), Gaps = 92/402 (22%)

Query: 6   PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA- 64
           P  P LP  P  DG+   + +P                     G   +    G+P  P  
Sbjct: 101 PGTPGLPGMPGHDGAPGPQGIPGCN------------------GTKGERGFPGSPGFPGL 142

Query: 65  GSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQ----QGVYSRGGYPG--AP 118
             P G   +PG+ G   ++      G +       N GY      QG+    G PG   P
Sbjct: 143 QGPPGPPGIPGMKGEPGSIIMSSLPGPKG------NPGYPGPPGIQGLPGPTGIPGPIGP 196

Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
               G  G PG  GLP        +F                      +    Q++    
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISE---QKRPIDV 253

Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMN-----PTGIGGVMGPSGLSPLAMNPTR 233
             Q G  G             G RGP  P G+      P G  G  G  G       P +
Sbjct: 254 EFQKGDQGLP-----------GDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGK 302

Query: 234 AA--------GMT--PLYAGQ--------RLPQHGYPGPPQAQPLPRQGVKRTYSEV--- 272
                     G+   P Y G+        +    G PGPP    +PR G   T  E    
Sbjct: 303 DGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPP-GLVIPRPGTGITIGEKGNI 361

Query: 273 -YPGQQYLQGGQYAPSTAQFAPSPGQP------PAPSPSYPGHRLPLQQGMTQSLSVPGP 325
             PG    +G +  P        PG P      P   P +PG R          +S+PGP
Sbjct: 362 GLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGP 421

Query: 326 TGLHYKPTRSIPGYPSSPLPGNPT-----------PPMTPSS 356
            GL  +P    PG P  P P  P            PP  P S
Sbjct: 422 PGLDGQP--GAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGS 461



 Score = 42.4 bits (98), Expect = 0.002
 Identities = 54/184 (29%), Positives = 62/184 (33%), Gaps = 23/184 (12%)

Query: 694  IAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPG 751
            I+++G    P  P   P +P     PG   S   PG       P     P L  F  TPG
Sbjct: 1070 ISSIGLPGLP-GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG 1128

Query: 752  PPPISYQSDIPSSL-LTSEKSTAC---LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP 807
            PP     S  P +  L  E         P Q  P G        G PG      G P  P
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-PAGQKGEPGQP 1187

Query: 808  QLHHSNPP--PASRQSLGQASL----------GPTGELAFSPATGVMGPPSMSGAGEAPE 855
               +  PP  P      G   L          GP GE  F    GV GPP   G   +P 
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG---SPG 1244

Query: 856  PALD 859
            PAL+
Sbjct: 1245 PALE 1248



 Score = 42.0 bits (97), Expect = 0.003
 Identities = 52/193 (26%), Positives = 63/193 (32%), Gaps = 42/193 (21%)

Query: 696 ALGPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP 753
           A GP   P  P  P  P  P     PG   +F  PG   +     +P  P L    PG P
Sbjct: 522 ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF--PGMKGDKGELGSPGAPGL----PGLP 575

Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
               Q  +P   L   K     P  +   G   P  NPG PGL                 
Sbjct: 576 GTPGQDGLPG--LPGPKGE---PGGITFKGERGPPGNPGLPGL----------------- 613

Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSY 873
             P +   +G    GP G +      GV G P   G    P P  D       P + ++ 
Sbjct: 614 --PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPG---IPGPKGD-------PGQTITQ 661

Query: 874 LGPPDLPTNNNDD 886
            G P LP N   D
Sbjct: 662 PGKPGLPGNPGRD 674



 Score = 41.6 bits (96), Expect = 0.003
 Identities = 55/206 (26%), Positives = 71/206 (34%), Gaps = 28/206 (13%)

Query: 699  PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPES--FPPTTPSTPTLAEFTPGPPPIS 756
            PGA    P+ PP  P     PG+  +   PGT  E     P  P  P       G P + 
Sbjct: 868  PGAP--GPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922

Query: 757  Y------QSDIPSSLLTSEKSTACLPSQMAPAGHLDPT--------HNPGTPGLHTSNLG 802
                   Q  +P    T EK +   P    P G +DP           PG PG+    + 
Sbjct: 923  GDDGLQGQPGLPGP--TGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI--PGVS 978

Query: 803  APPGPQLHHSNP--PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA-GEAPEPALD 859
             P G Q    +P  P  S Q       GP G        G++GPP + G  G+   P   
Sbjct: 979  GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQ 1038

Query: 860  LLPELTNPDELLSYLGPPDLPTNNND 885
             +     P  +    G P LP    D
Sbjct: 1039 GVEGPPGPSGVPGQPGSPGLPGQKGD 1064



 Score = 40.0 bits (92), Expect = 0.010
 Identities = 53/200 (26%), Positives = 62/200 (31%), Gaps = 33/200 (16%)

Query: 699 PGAAPFAPLQPP-----------------SVPAPSDYPGQGSSFLGPGTFPESFPPTTPS 741
           PGAA   P  PP                 S+P P    GQ  +   PG    + P   PS
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPS 447

Query: 742 TPTLAEFTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 800
                   PGPP       +     +  +K   C        G   P   PG PG     
Sbjct: 448 DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCF--NCIGTGISGPPGQPGLPG----- 500

Query: 801 LGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDL 860
           L  PPG     S   P  +   GQA  G TG        G  G P   G+   P   L  
Sbjct: 501 LPGPPG-----SLGFPGQKGEKGQA--GATGPKGLPGIPGAPGAPGFPGSKGEPGDIL-T 552

Query: 861 LPELTNPDELLSYLGPPDLP 880
            P +      L   G P LP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572



 Score = 37.0 bits (84), Expect = 0.082
 Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 25/177 (14%)

Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 768
           P +P    YPG+       G   ++ PP  P    L    PG    I  + +I    L  
Sbjct: 312 PGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPG---LVIPRPGTGITIGEKGNIGLPGLPG 368

Query: 769 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 828
           EK     P    P         PG PG   + +  PPGP        P  R   G    G
Sbjct: 369 EKGERGFPGIQGP---------PGLPGPPGAAVMGPPGPPGF-----PGERGQKGDE--G 412

Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNND 885
           P G ++     G+ G P   G    P PA   +P    P + +   GPP  P +  D
Sbjct: 413 PPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGPPGSPGD 464



 Score = 34.7 bits (78), Expect = 0.41
 Identities = 35/143 (24%), Positives = 41/143 (28%), Gaps = 36/143 (25%)

Query: 710  PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTP---TLAEFTPGPPPISYQSDIPSSLL 766
            P +  PS  PG       PG      PP  P       + +   GPP I  Q  +     
Sbjct: 1335 PGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG--- 1391

Query: 767  TSEKSTACLPSQMAPAGHLDPTHNPGTPGLH----------------------TSNLGAP 804
                    LP    P G   PT  PG PG +                      T  L  P
Sbjct: 1392 --------LPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1443

Query: 805  PGPQLHHSNPPPASRQSLGQASL 827
            PGP      P P    S+    L
Sbjct: 1444 PGPDGLQGPPGPPGTSSVAHGFL 1466


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 69/255 (27%), Positives = 85/255 (33%), Gaps = 37/255 (14%)

Query: 145 TQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGP 204
           +Q AA+AA     A  T    A  A          S  GA GAG +  ++      P  P
Sbjct: 31  SQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPP 90

Query: 205 SVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQG 264
             PAG    G GG   P   SP    P   AG  P  A  R P  G  G     P+P   
Sbjct: 91  --PAGRARPGGGGPQRPGPPSP--RRPLVPAGPAPPAAKLRPPPEGSAG--SCAPVPAAA 144

Query: 265 VKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVP- 323
                 E  P       G  A   A+  P PG  P P P  PG   P   G  Q+L+   
Sbjct: 145 AVAAGPEPAPAGPAKPAGP-AALAARAGPGPGPGPGPGPG-PGPGKPAGPGAAQTLNGSA 202

Query: 324 ------------------GPTGLHYKPTRSIPGY----------PSSPLPGNPTPPMTPS 355
                             GP  L   P  + PG            + P P  P+PP  P+
Sbjct: 203 ALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPA 262

Query: 356 SSVPYMSPNQEVKSP 370
            + P  +P     +P
Sbjct: 263 PAAPAAAPPPPPPAP 277



 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 63/237 (26%), Positives = 81/237 (34%), Gaps = 49/237 (20%)

Query: 658 PVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSD 717
           P  P   ++  P+G A   C  V  A  +         A GP  AP  P +P    A + 
Sbjct: 119 PAPPAAKLRPPPEGSA-GSCAPVPAAAAV---------AAGPEPAPAGPAKPAGPAALAA 168

Query: 718 YPGQGSSFLGPGTFPESFP-PTTPSTPTLAEFTPGP-----------PPISYQSDIPSSL 765
             G G    GPG  P   P P  P+ P  A+   G            P +S  ++ P++L
Sbjct: 169 RAGPGP---GPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAAL 225

Query: 766 LTSEKSTA-------------------CLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPG 806
           L   K  A                     PS  A      P   P  P    + L  PPG
Sbjct: 226 LPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG 285

Query: 807 -----PQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPAL 858
                P    + PPPA+ Q+ G A   P    A     GV G P    A  AP P +
Sbjct: 286 HPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGV 342



 Score = 42.0 bits (97), Expect = 0.003
 Identities = 68/277 (24%), Positives = 93/277 (33%), Gaps = 47/277 (16%)

Query: 60  PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
           P  P  +P+  +  PG   G    T+   +   A A+ G + G       + GG  G  G
Sbjct: 270 PPPPPPAPATLARPPGHPAGPP--TAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSG 327

Query: 120 FTTGYAGGPGGLGL---PSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQS 176
                  GPG       P   A       QAA  AA   AA+   +TA + V        
Sbjct: 328 -----QPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGP----- 377

Query: 177 QELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAG 236
              +  GA+ +  +          P  P  P G+     G V      +P A      A 
Sbjct: 378 ---TMQGALPSPAAVP--------PPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRAT 426

Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYL--QGGQ--------YAP 286
           +TP     RLPQ     PPQ  P   Q       ++ PG   +  + GQ         A 
Sbjct: 427 LTPTVLAPRLPQ-----PPQ-NPTNIQNF-----QLPPGMVLVRSENGQLLMIPQQALAQ 475

Query: 287 STAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVP 323
             AQ    P    AP P+ P    P+Q    Q+   P
Sbjct: 476 MQAQAHAQPQTTMAPRPATPTSAPPVQISTVQAPGTP 512



 Score = 38.5 bits (88), Expect = 0.028
 Identities = 69/296 (23%), Positives = 92/296 (31%), Gaps = 60/296 (20%)

Query: 56  VLGNPMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYP 115
           V G+P G AG+   +       G   A   P   G+     GG  +             P
Sbjct: 63  VSGSPAGAAGAGPAAP----AEGAPGAAPEPPPAGRARPGGGGPQR-------------P 105

Query: 116 GAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
           G P         P G   P+   RP  + +  + A   AA AA A     A     +   
Sbjct: 106 GPPSPRRPLV--PAGPAPPAAKLRPPPEGSAGSCAPVPAA-AAVAAGPEPAPAGPAKPAG 162

Query: 176 SQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAA 235
              L+     G G           GP     P    P G G     +G + L  +   AA
Sbjct: 163 PAALAARAGPGPGP----------GPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAA 212

Query: 236 GMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSP 295
               L            GP    PLP+     T  +  P      G    P+ A  APSP
Sbjct: 213 PAVSLVNN---------GPAALLPLPKPAAPGTVIQTPP----FVGAAAPPAPA--APSP 257

Query: 296 GQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPP 351
             P AP+P+ P    P       +L+ P             PG+P+ P    P  P
Sbjct: 258 --PAAPAPAAPAAAPPPPPPAPATLARP-------------PGHPAGPPTAAPAVP 298



 Score = 38.5 bits (88), Expect = 0.028
 Identities = 46/173 (26%), Positives = 60/173 (34%), Gaps = 16/173 (9%)

Query: 689 SVMEMIAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF 748
           S   ++ A  P A   A   P S  A       G +  G    P + PP  P TPT    
Sbjct: 346 SPKRVVQAAPPAAQTLAASGPASTAASMVI---GPTMQGALPSPAAVPPPAPGTPTGLPK 402

Query: 749 TPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ 808
                     S  P++  +  ++T   P+ +AP     P  NP     +  N   PPG  
Sbjct: 403 GAAGAVTQSLSRTPTATTSGIRATLT-PTVLAPRLP-QPPQNP----TNIQNFQLPPGMV 456

Query: 809 LHHSN-------PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAP 854
           L  S        P  A  Q   QA   P   +A  PAT    PP      +AP
Sbjct: 457 LVRSENGQLLMIPQQALAQMQAQAHAQPQTTMAPRPATPTSAPPVQISTVQAP 509


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 70/236 (29%), Positives = 92/236 (38%), Gaps = 45/236 (19%)

Query: 656 PVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAAL----GPGAAPF------- 704
           P P+ P  ++   P GPA +    VS A + +P V+  +       GPGA PF       
Sbjct: 269 PPPLPPSNNLPAHP-GPASQP--PVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLLS 325

Query: 705 --APLQPPSVPAPSDYPGQG----------SSFLGPGTFPESFPPTT--------PSTPT 744
             A  Q P +P PS   G+           SS L P       PPT         P TP 
Sbjct: 326 AAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQTPR 385

Query: 745 LAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAG--HLDPTHNPGTPGLHTSNLG 802
            +     P P+     +P      E S   LPS ++  G     P+H+ G+  L  S+  
Sbjct: 386 RSR-PRAPAPVPQPFSLP------EPSQPILPSVLSLLGLPTPGPSHSDGSFNLLGSDAH 438

Query: 803 APPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPAL 858
            PP P L  S  PP  R  + Q SL  T   + S   G   PP+ S A   P P L
Sbjct: 439 LPPPPTL-SSGSPPQPRHPI-QPSLPGTTSGSLSSVPGAPAPPAASKAPVVPSPVL 492



 Score = 44.3 bits (103), Expect = 5e-04
 Identities = 59/267 (22%), Positives = 91/267 (34%), Gaps = 45/267 (16%)

Query: 669 PDGPALKRC--RTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPG---QGS 723
           P+ P++ +       P  +  P + + + + G  +  F P      PAP   P       
Sbjct: 166 PEPPSVSQAFPTLAGPGGLFPPRLADPVPSGGSSSPRFLPRGNAPSPAPPPPPAISLNAP 225

Query: 724 SFLGPGTFPESFPPT---TPSTPTLAEFTPGPPPISYQSDI-----------------PS 763
           S+        S  P+   +P  P  +   P  PP+ + SD                  P+
Sbjct: 226 SYNWGAALRSSLVPSDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHPGPA 285

Query: 764 SLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQ--- 820
           S      +T  LP  + P G       PG P    S+L +      H   PPP++ Q   
Sbjct: 286 SQPPVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPSTLQGRR 345

Query: 821 -------SLGQASLGPTGELAFSPAT--------GVMGPPSMSGAGEAPEPALDLLPELT 865
                  +   +SL P+      P T        G   P        AP P    LPE +
Sbjct: 346 PRAQAPSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQTPRRSRPRAPAPVPQPFSLPEPS 405

Query: 866 NP--DELLSYLGPPDLPTNNNDDLLSL 890
            P    +LS LG P    +++D   +L
Sbjct: 406 QPILPSVLSLLGLPTPGPSHSDGSFNL 432



 Score = 42.4 bits (98), Expect = 0.002
 Identities = 61/222 (27%), Positives = 81/222 (36%), Gaps = 55/222 (24%)

Query: 677 CRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFP 736
           C   SP     P +   ++   P A P     P  VP  +   G      GPG+ P   P
Sbjct: 121 CSHSSPGEGASPQMFHTVSPGPPSARP-----PCRVPPTTPLNG------GPGSLPPEPP 169

Query: 737 PTTPSTPTLAEFTPG---PPPISYQSDIPSSLLTSEKSTACLPSQMAPA---------GH 784
             + + PTLA   PG   PP ++    +PS       S   LP   AP+           
Sbjct: 170 SVSQAFPTLA--GPGGLFPPRLA--DPVPSG---GSSSPRFLPRGNAPSPAPPPPPAISL 222

Query: 785 LDPTHNPGT---PGLHTSNLGAPPGPQLHHS--------------NPPPASRQSLGQASL 827
             P++N G      L  S+LG+PP P    S               PPP    +   A  
Sbjct: 223 NAPSYNWGAALRSSLVPSDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHP 282

Query: 828 GPTGELAFSPATG----VMGP----PSMSGAGEAPEPALDLL 861
           GP  +   S AT     V+GP    P++ G G  P  A  LL
Sbjct: 283 GPASQPPVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLL 324



 Score = 40.8 bits (94), Expect = 0.006
 Identities = 65/233 (27%), Positives = 84/233 (36%), Gaps = 47/233 (20%)

Query: 682 PAHVLMPSVMEMIAALGPGAAPF----------APLQPPSVPAPSDYPGQGSSFLGPGTF 731
           P+  ++PSV+ ++    PG +            A L PP   + S  P Q    + P   
Sbjct: 404 PSQPILPSVLSLLGLPTPGPSHSDGSFNLLGSDAHLPPPPTLS-SGSPPQPRHPIQP--- 459

Query: 732 PESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEK-------STACLPSQMAPAGH 784
             S P TT  + +     P PP  S    +PS +L S           AC P      G 
Sbjct: 460 --SLPGTTSGSLSSVPGAPAPPAASKAPVVPSPVLQSPSEGLGMGAGPAC-PLPPLAGGE 516

Query: 785 LDPTHNP---------GTPGLHTSNLGAPPGP-QLHHSNPPPASRQSLGQASLGPTGE-- 832
             P  +P         G PG+    LGA P P  L    P P    SL     G  G+  
Sbjct: 517 AFPFPSPEQGLALSGAGFPGM----LGALPLPLSLGQPPPSPLLNHSLFGVLTGGGGQPP 572

Query: 833 -LAFSPATGVMGPPSMSGAGEAPEPAL-DLLPELTNPDELLSYLGPPDLPTNN 883
                P  G  GPP   G  E P   +  LLP    P +LL    PP  P +N
Sbjct: 573 PEPLLPPPGGPGPPLAPGEPEGPSLLVASLLP--PPPSDLLP---PPSAPPSN 620



 Score = 36.6 bits (83), Expect = 0.11
 Identities = 102/443 (23%), Positives = 141/443 (31%), Gaps = 99/443 (22%)

Query: 6   PMKPALP----------PAP-HGDGSFAY-------ESVPWQQSATQPAGSLSVVTTVWG 47
           P +P LP          P P H DGSF            P   S + P     +  ++ G
Sbjct: 404 PSQPILPSVLSLLGLPTPGPSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPG 463

Query: 48  VGNATQSQVLGNPMGPAGS-----PSGSSMMPGVA---GGSSALTSPQCLGQQAFAEGGA 99
             + + S V G P  PA S     PS     P      G   A   P   G +AF     
Sbjct: 464 TTSGSLSSVPGAPAPPAASKAPVVPSPVLQSPSEGLGMGAGPACPLPPLAGGEAFPFPSP 523

Query: 100 NKGYVQQGV------------YSRGGYPGAP-------GFTTGYAGGP---------GGL 131
            +G    G              S G  P +P       G  TG  G P         GG 
Sbjct: 524 EQGLALSGAGFPGMLGALPLPLSLGQPPPSPLLNHSLFGVLTGGGGQPPPEPLLPPPGGP 583

Query: 132 GLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSF 191
           G P     P  +      A+ +    +      +A  + L       L+     G G+  
Sbjct: 584 GPPLAPGEP--EGPSLLVASLLPPPPSDLLPPPSAPPSNLLASFLPLLALGPTAGDGE-- 639

Query: 192 NSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGY 251
                  G   G   P+G   +G+G  + P    PL+  PT  A  + L A    P  G 
Sbjct: 640 -------GSAEGAGGPSGEPFSGLGD-LSPLLFPPLSAPPTLIALNSALLAATLDPPSGT 691

Query: 252 PGPPQAQPLPRQGVKR---TYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPP-APSPSYPG 307
           P  P     P+ G      T +   PG         A S  +   + G+PP   SP    
Sbjct: 692 PPQPCVLSAPQPGPPTSSVTTATTDPG---------ASSLGKAPSNSGRPPQLLSPLLGA 742

Query: 308 HRLPLQQGMTQS-------LSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSS--- 357
             L     +T S       L  PGP        + +PG       G   PP++ +SS   
Sbjct: 743 SLLGDLSSLTSSPGALPSLLQPPGPLLSGQLGLQLLPG-------GGAPPPLSEASSPLA 795

Query: 358 ---VPYMSPNQEVKSPFLPDLKP 377
                   P ++ ++P LP   P
Sbjct: 796 CLLQSLQIPPEQPEAPCLPPESP 818



 Score = 31.2 bits (69), Expect = 4.5
 Identities = 68/271 (25%), Positives = 91/271 (33%), Gaps = 48/271 (17%)

Query: 128 PGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGA 187
           PGG G+         D T+       A A AT   +   T +            + + G 
Sbjct: 84  PGGAGV---GPASEEDMTKLCNHRRKAVAMATLYRSMETTCS------------HSSPGE 128

Query: 188 GQSFNSQFLQHGGPRGPSVPAGMNPTG-IGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRL 246
           G S         GP     P  + PT  + G  GP  L P    P   +   P  AG   
Sbjct: 129 GASPQMFHTVSPGPPSARPPCRVPPTTPLNG--GPGSLPP---EPPSVSQAFPTLAG--- 180

Query: 247 PQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYP 306
           P   +P P  A P+P  G            ++L  G         APSP  PP P+ S  
Sbjct: 181 PGGLFP-PRLADPVPSGGSS--------SPRFLPRGN--------APSPAPPPPPAISLN 223

Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPL----PGNPTPPMTPSSSVP-YM 361
                    +  SL VP   G    P  S       PL         PP+ PS+++P + 
Sbjct: 224 APSYNWGAALRSSL-VPSDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHP 282

Query: 362 SP-NQEVKSPFLPDLKPNLNSLHSSPSGSGP 391
            P +Q   S     L   L  L  +P+  GP
Sbjct: 283 GPASQPPVSSATMHLPLVLGPLGGAPTVEGP 313



 Score = 31.2 bits (69), Expect = 4.5
 Identities = 51/205 (24%), Positives = 68/205 (33%), Gaps = 46/205 (22%)

Query: 197 QHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQ 256
           QH     PS   G  P        PS     ++ P++     P    + L   G   P +
Sbjct: 331 QHPPLPPPSTLQGRRPRA----QAPSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQTPRR 386

Query: 257 AQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFA--PSPGQ----------------P 298
           ++P     V + +S   P Q  L      PS       P+PG                 P
Sbjct: 387 SRPRAPAPVPQPFSLPEPSQPIL------PSVLSLLGLPTPGPSHSDGSFNLLGSDAHLP 440

Query: 299 PAP---SPSYPGHRLPLQQGM--TQSLSVPGPTGLHYKPTRS-IPGYPSSPL-------- 344
           P P   S S P  R P+Q  +  T S S+    G    P  S  P  PS  L        
Sbjct: 441 PPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASKAPVVPSPVLQSPSEGLG 500

Query: 345 ----PGNPTPPMTPSSSVPYMSPNQ 365
               P  P PP+    + P+ SP Q
Sbjct: 501 MGAGPACPLPPLAGGEAFPFPSPEQ 525


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 57.4 bits (137), Expect = 6e-08
 Identities = 101/398 (25%), Positives = 140/398 (35%), Gaps = 47/398 (11%)

Query: 10   ALPPAPHGDGSF-AYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPS 68
            A PP+P G  +  + +  P   + T P+   S   T +  G +T       P  P GSP+
Sbjct: 991  ATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAA--TPPSPKGSPA 1048

Query: 69   GSSMMPGVAGGSSALTSPQCLGQQAFAE-GGANKGYVQQGVYSRGG--YPGAPGFTTGYA 125
             + +  G A  + A T P   G  A     GA           +GG   P   G     A
Sbjct: 1049 ATPLPKG-APTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPA 1107

Query: 126  GGP----GGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
              P    GGL  P H   P+T    A   +     A      A  T AA        L+ 
Sbjct: 1108 ATPPSPKGGLATPPHKGAPTTP--AATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLAT 1165

Query: 182  YGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSG----LSPLAMNPTRAAGM 237
                GA                P+ PA   P+  GG+  PS      +P A  P+   G+
Sbjct: 1166 PPPKGA----------------PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL 1209

Query: 238  -TPLYAGQRLPQHGYPGPPQ---AQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
             TP   G        P  P+   A P P+ G   T +   P  +   GG   P+T     
Sbjct: 1210 ATPSPKGAPTTPAATPPSPKGGLATPSPK-GAPTTPAATPPSPK---GG---PATPPPKG 1262

Query: 294  SPGQPPAPSPSYPGH-RLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPM 352
            +P  P A  PS  G    P  +G      V  P+      T    G P+ P    P+P  
Sbjct: 1263 APTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKG 1322

Query: 353  TPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSG 390
            +P +  P  +P     +P  P   P L +  ++PS  G
Sbjct: 1323 SPGTPPPKGAPTPPAVTPPSPKGTPTLPA--TTPSSKG 1358



 Score = 50.4 bits (119), Expect = 7e-06
 Identities = 98/428 (22%), Positives = 142/428 (33%), Gaps = 39/428 (9%)

Query: 9    PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQ-----VLGNPMGP 63
            P+LPPA    G+   + +    +    A S     T     +AT S       L +   P
Sbjct: 737  PSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLTYLADSPSP 796

Query: 64   AG-SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTT 122
             G S S  +  P    GS+   +P  +G  +         ++ +   S  G   +P  TT
Sbjct: 797  LGVSVSPQTKRPPTKKGSAGPDTP--IGNLSSPVSPVEASFLPENSLSFQGSKDSPA-TT 853

Query: 123  GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQY 182
                 P   G P+ +A      T  +          T T +        +   +    Q 
Sbjct: 854  HSPTPPSPKGAPTPSA-----VTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQA 908

Query: 183  GAMGAGQSFNSQFLQHGGPRG----------PSVPAGMNPTGIGGVMGPSGLSPLAMNPT 232
             A+    S   +      P+G          P+ PA   P+  GG   PS     A  P 
Sbjct: 909  PALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPS--PKWAPTPP 966

Query: 233  RAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEV---YPGQQYLQGGQYAPSTA 289
             A   +P          G P PP A P   +G   T S      P        + +P+  
Sbjct: 967  AATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAAT 1026

Query: 290  QFAPSPGQPPA---PSPSYPGHRLPLQQGM--TQSLSVPGPTGLHYKPTRSIPGYPSSPL 344
             F      PPA   PSP       PL +G   T + ++P P G    P  S+ G P+ P 
Sbjct: 1027 PFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATP--SLKGAPTPPA 1084

Query: 345  PGNPTP---PMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPV 401
               P+P   P TPS     M P     SP      P      ++P+ + P  +  L  P 
Sbjct: 1085 ATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPP 1144

Query: 402  RDGVVLEP 409
              G    P
Sbjct: 1145 PKGAPTTP 1152



 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 88/390 (22%), Positives = 120/390 (30%), Gaps = 80/390 (20%)

Query: 10   ALPPAPHGDGSF-AYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG------ 62
            A PP+P G  +  + +  P   +AT P+    + T        T +    +P G      
Sbjct: 1085 ATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPP 1144

Query: 63   PAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTT 122
            P G+P+  +  P    G  A   P+       A   + KG +     S  G P  P  T 
Sbjct: 1145 PKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGL--ATPSPKGAPTTPAATP 1202

Query: 123  GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQY 182
                  GGL  PS    P+T    AA   +     AT +     T  A      +     
Sbjct: 1203 --PSPKGGLATPSPKGAPTTP---AATPPSPKGGLATPSPKGAPTTPAATPPSPK----- 1252

Query: 183  GAMGAGQSFNSQFLQHGGPR------GPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAG 236
                            GGP        P+ PA   P+  GG+  P      A NP     
Sbjct: 1253 ----------------GGPATPPPKGAPTPPAATPPSLKGGLATPPHKG--APNPAVVTP 1294

Query: 237  MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
             +P       P  G P PP A P   +G                    +P T    P  G
Sbjct: 1295 PSPKGGPATSPPKGAPTPPAATPPSPKG--------------------SPGTP---PPKG 1331

Query: 297  QPPAP---------SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGN 347
             P  P         +P+ P      + G T   S  GPT     P  + P +   P    
Sbjct: 1332 APTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPT-----PPAATPSHKGGPAMTP 1386

Query: 348  PTPPMTPSSSVPYMSPNQEVKSPFLPDLKP 377
            P+P   P+   P   P      P  P   P
Sbjct: 1387 PSPKRGPAIPSPKGDPTSPAVIPLSPKKAP 1416



 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 62/226 (27%), Positives = 79/226 (34%), Gaps = 33/226 (14%)

Query: 651  TCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALG-PGAAPF----- 704
            T S K  P  P         GPA     T SP     P  +   +  G P A PF     
Sbjct: 979  TPSPKGAPTPPAATPPSPKGGPA-----TPSPKGAPTPPAVTPPSPKGSPAATPFPKGAS 1033

Query: 705  -----APLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQS 759
                  P  P   PA +  P +G+      T P   P   P+TP+L +  P PP  +  S
Sbjct: 1034 TPPAATPPSPKGSPAATPLP-KGAPTTPAATLPS--PKGGPATPSL-KGAPTPPAATPPS 1089

Query: 760  DIPSSLLTSEKSTACLPSQMAPA---GHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPP 816
                    S K     P+   P+   G   P H     G  T+    PP P+   + PPP
Sbjct: 1090 PKGGPATPSPKGAPMPPAATPPSPKGGLATPPHK----GAPTTPAATPPSPKGGLATPPP 1145

Query: 817  ASRQSLGQAS-LGPTGELAF-----SPATGVMGPPSMSGAGEAPEP 856
                +   A+   P G LA      +P T    PPS  G    P P
Sbjct: 1146 KGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSP 1191



 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 64/240 (26%), Positives = 80/240 (33%), Gaps = 29/240 (12%)

Query: 655  KPVPVKPDMHIKEEPDGPALKRCRTV-SPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVP 713
            K  P  P   +     GPA    +   +P     PS     A   P  AP     PP+  
Sbjct: 1054 KGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPM----PPAAT 1109

Query: 714  APSDYPGQGSS-FLGPGTFPESFPPT------TP---STPTLAEFTPGPPPISYQSDIPS 763
             PS   G  +    G  T P + PP+      TP     PT    TP  P     +  P 
Sbjct: 1110 PPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPK 1169

Query: 764  SLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLG 823
               T+  +T   PS   P G L     P   G  T+    PP P+   + P P    +  
Sbjct: 1170 GAPTTPAATP--PS---PKGGLA---TPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTP 1221

Query: 824  QASL-GPTGELAF-----SPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPP 877
             A+   P G LA      +P T    PPS  G    P P     P    P  L   L  P
Sbjct: 1222 AATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATP 1281



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 59/226 (26%), Positives = 78/226 (34%), Gaps = 30/226 (13%)

Query: 651  TCSWKPVPVKPDMHIKEEPDGPALKRCRTV-SPAHVLMPSVMEMIAALGPGAAPFAPLQP 709
            T S K  P  P         GPA    +   +P     PS+   +A      AP      
Sbjct: 1234 TPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAP-----N 1288

Query: 710  PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPS-TPTLAEFTPGPPPISYQSDIPSSLLTS 768
            P+V  P    G      GP T P    PT P+ TP   + +PG PP       P+    S
Sbjct: 1289 PAVVTPPSPKG------GPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPS 1342

Query: 769  EKSTACLPS--------QMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP-PPASR 819
             K T  LP+           P+    PT    TP         PP P+   + P P    
Sbjct: 1343 PKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDP 1402

Query: 820  QSLGQASLGP--------TGELAFSPATGVMGPPSMSGAGEAPEPA 857
             S     L P        T E A +P+ G + PP+++       PA
Sbjct: 1403 TSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPA 1448



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 99/427 (23%), Positives = 136/427 (31%), Gaps = 73/427 (17%)

Query: 6    PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
            P  PA  P P   G  A    P  + A  PA    VVT     G    S   G P  PA 
Sbjct: 1264 PTPPAATP-PSLKGGLA---TPPHKGAPNPA----VVTPPSPKGGPATSPPKGAPTPPAA 1315

Query: 66   SPSGSSMMPGV-----AGGSSALTSPQCLGQQAF------AEGGANKGYVQQGVYSRGGY 114
            +P      PG      A    A+T P   G          ++GG      ++G       
Sbjct: 1316 TPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEG------- 1368

Query: 115  PGAPGFTTGYAGGPG--------GLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATA 166
            P  P  T  + GGP         G  +PS    P++      +     A   T    AT 
Sbjct: 1369 PTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATP 1428

Query: 167  TVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRG-PSVPAGMNPTGIGGVMGPSGLS 225
            +   L       +S   A                P+G P+ P+      +  V  PS   
Sbjct: 1429 SKGDLTPPAVTPVSLKKAPATS-----------APKGGPATPSSKGDPTLPAVTPPSPKE 1477

Query: 226  PLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYA 285
            P A     A   +P  A         P P  A  LP          V P        +  
Sbjct: 1478 PPAPKQV-ATSSSPKKAPAT------PAPMGAPTLPA---------VIPSSP-----KEV 1516

Query: 286  PSTAQFAPSPGQPPAP--SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT-RSIPGYPSS 342
            P+T      P  P A   S   P    P +  +  +++VP P      PT +  P  PSS
Sbjct: 1517 PATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSS 1576

Query: 343  PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVR 402
                +P P +TPS+     SP + +  P +    P+     + P+ + P  E     P  
Sbjct: 1577 KEASSP-PAVTPSTYKGAPSPKELLIPPAV--TSPSPKEAPTPPAVTPPSPEKGPATPAP 1633

Query: 403  DGVVLEP 409
             G    P
Sbjct: 1634 KGTPTSP 1640



 Score = 40.8 bits (94), Expect = 0.006
 Identities = 64/273 (23%), Positives = 83/273 (30%), Gaps = 47/273 (17%)

Query: 650  PTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQP 709
            P  +  P P  P          P   +  T+ P     PSV+ +       A P AP Q 
Sbjct: 850  PATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATP-APKQA 908

Query: 710  PSV-------------PAPSDYPGQGSSFLGPGTFPESFPPT------------------ 738
            P++             PAP   P   S   G  T P + PP+                  
Sbjct: 909  PALSMTSSSPKKARATPAPKGIPASPSP-KGAPTPPAATPPSPKGGPATPSPKWAPTPPA 967

Query: 739  -TPSTPTLAEFTPG------PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNP 791
             TP +P     TP       PP  +  S        S K     P+   P+    P   P
Sbjct: 968  ATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATP 1027

Query: 792  GTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLGQASL-----GP-TGELAFSPATGVMGP 844
               G  T     PP P+    + P P    +   A+L     GP T  L  +P      P
Sbjct: 1028 FPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATP 1087

Query: 845  PSMSGAGEAPEPALDLLPELTNPDELLSYLGPP 877
            PS  G    P P    +P    P      L  P
Sbjct: 1088 PSPKGGPATPSPKGAPMPPAATPPSPKGGLATP 1120



 Score = 38.5 bits (88), Expect = 0.028
 Identities = 81/293 (27%), Positives = 96/293 (32%), Gaps = 89/293 (30%)

Query: 687 MPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYP----GQGSSFLGPGT---------FPE 733
           M S + + AALG    P   L PP  PAP   P     Q S F  P T         FP+
Sbjct: 28  MSSALSVTAALGQ---PGPTLPPPCSPAPQQCPLSAANQASPFPSPSTIASTPLEVPFPQ 84

Query: 734 SFP------PTTPSTPTLAEFTPGPP---------------------------------P 754
           S         T P  PT      GPP                                 P
Sbjct: 85  SSSGTALPLGTAPEAPTFLPNLIGPPISPAALALASPMIAPTLKGTPSSSAPLALVALAP 144

Query: 755 ISYQ--SDIPSSLLTSEKSTACLPS-----QMAPAGHLDPTHNPG-TPGLHTSNLGAPPG 806
            S Q  S  P +LLTS  S A   S       AP    +P  N    P     N    P 
Sbjct: 145 HSVQKSSAFPPNLLTSPPSVAVAESGSVITLSAPIAPSEPKTNLNKVPSEVVPNPKGTPS 204

Query: 807 PQL------HHSNPPPASRQSLGQASL---GPTGELAF-----------SPATGVMGPPS 846
           P        +H   P AS QS G ASL    PT  LA            S       P S
Sbjct: 205 PPCIVSTVPYHCVTPMASIQS-GVASLPQTTPTTTLAIASPQVKDTTISSVLISPQNPGS 263

Query: 847 MSGAGE-APEPALDL----LPELTNPDELLSYLGPPDLPTNNNDDLLSLFENN 894
           +S  G  +P  AL L    LP +T+  +      PPD P +    L  L +++
Sbjct: 264 LSLKGPVSPPAALSLSTQSLPVVTSSQKTAGPNTPPDFPISLGSHLAPLHQSS 316



 Score = 37.7 bits (86), Expect = 0.048
 Identities = 52/208 (25%), Positives = 78/208 (37%), Gaps = 28/208 (13%)

Query: 666  KEEPDGPALKRCRTVSPAHVLM----PSVMEMIAALGPGAAPF-APLQPPSVPAPSDYPG 720
            KE P  P+ +R   ++P   L+    P+ +    AL P A    +P + P++P P + P 
Sbjct: 1514 KEVPATPSSRR-DPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPA 1572

Query: 721  QGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMA 780
                   P +   S PP    TP+  +  P P  +     IP ++ +     A  P  + 
Sbjct: 1573 T------PSSKEASSPPAV--TPSTYKGAPSPKELL----IPPAVTSPSPKEAPTPPAVT 1620

Query: 781  PAGHLDPTHNPGTPGLHTSNLGAPPGP-QLHHSNPPPASRQSLGQASLGPTGELAFSPAT 839
            P     P   P TP    +    P  P  L  S   PAS        +G T   A     
Sbjct: 1621 PP---SPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPAS----VTCKMGATVPQASKGLP 1673

Query: 840  GVMGPPSMSGAGEAPEPALDLLPELTNP 867
               GP ++     AP P  +  P +T P
Sbjct: 1674 AKKGPTALKEVLVAPAP--ESTPIITAP 1699



 Score = 35.8 bits (81), Expect = 0.18
 Identities = 93/421 (22%), Positives = 141/421 (33%), Gaps = 80/421 (19%)

Query: 22  AYESVP-WQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSSMMPGVAGGS 80
           A E+VP  +Q   QP    +V+     +         G  + P  SP+        A  +
Sbjct: 5   ATETVPATEQELPQPQAETAVLPMSSALSVTAALGQPGPTLPPPCSPAPQQCPLSAANQA 64

Query: 81  SALTSPQCLG----QQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAG---GPGGLGL 133
           S   SP  +     +  F +  +            G  P AP F     G    P  L L
Sbjct: 65  SPFPSPSTIASTPLEVPFPQSSSGTAL------PLGTAPEAPTFLPNLIGPPISPAALAL 118

Query: 134 PSHAARPSTDFTQAAAA--AAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSF 191
            S    P+   T +++A  A VA A  +   ++      L    S  +++ G++      
Sbjct: 119 ASPMIAPTLKGTPSSSAPLALVALAPHSVQKSSAFPPNLLTSPPSVAVAESGSV------ 172

Query: 192 NSQFLQHGGPRGPSVP-AGMNPTGIGGVMGPSGLS--PLAMNPTRAAGMTPLYAGQRLPQ 248
               +    P  PS P   +N      V  P G    P  ++      +TP+ +     Q
Sbjct: 173 ----ITLSAPIAPSEPKTNLNKVPSEVVPNPKGTPSPPCIVSTVPYHCVTPMAS----IQ 224

Query: 249 HGYPGPPQAQPLPRQGVKR------TYSEVY-----PGQQYLQGGQYAPS---------- 287
            G    PQ  P     +        T S V      PG   L+G    P+          
Sbjct: 225 SGVASLPQTTPTTTLAIASPQVKDTTISSVLISPQNPGSLSLKGPVSPPAALSLSTQSLP 284

Query: 288 ---TAQFAPSPGQPPAPSPSYPGHRLPLQQ---GMTQSLSVPGPTGLHYKPTRSI----- 336
              ++Q    P  PP    S   H  PL Q   G  Q L   GP+ L     ++I     
Sbjct: 285 VVTSSQKTAGPNTPPDFPISLGSHLAPLHQSSFGSVQLLGQTGPSALSDPTVKTISVDHS 344

Query: 337 ---PGYPSS-----PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSG 388
                YPS      PLP          ++ P ++P+ + K P        ++S+  SPSG
Sbjct: 345 STGASYPSQRSVIPPLPSRNEVVPATVAAFPVVAPSVD-KGP------STISSITCSPSG 397

Query: 389 S 389
           S
Sbjct: 398 S 398


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 57.0 bits (136), Expect = 8e-08
 Identities = 98/367 (26%), Positives = 124/367 (33%), Gaps = 51/367 (13%)

Query: 58  GNPMGPAGSPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYP 115
           G P GP G P+G    PG +G  G     SP   G+             + GV    G P
Sbjct: 60  GTP-GPPG-PAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKP 117

Query: 116 GAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ-EK 174
           G  G   G  G  G  GLP     P        A  +V         T          EK
Sbjct: 118 GERG-PYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEK 176

Query: 175 QSQEL----SQYGAMG---AGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPL 227
            +  +     Q G MG    G+          GP GPS P G+   G  GV G  G+   
Sbjct: 177 GAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGD 236

Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPR--QGVKRTYSEVYPGQQYLQGGQYA 285
              P     M P+         G PG PQ  P  R  +G+ +  +   PGQ  + G +  
Sbjct: 237 RGFP---GEMGPI---------GPPG-PQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGL 283

Query: 286 PSTAQFAPSPGQPPAPSPSYPGHR----------LPLQQGMTQSLSVPGPTGLHYKP--- 332
           P     A  PG P    P  PG +           P  +G      +PG  GL   P   
Sbjct: 284 PGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNM 343

Query: 333 ----TRSIPGYPSSPLPGNPTPPMTPS----SSVPYMSPNQEVKSPFLPDLKPNLNSLHS 384
                + IPG    P P   T P  P+    +     SP  + K P  P  KP L+    
Sbjct: 344 GPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGK-PGYPG-KPGLDGPKG 401

Query: 385 SPSGSGP 391
           +P   GP
Sbjct: 402 NPGLPGP 408



 Score = 54.3 bits (129), Expect = 5e-07
 Identities = 91/360 (25%), Positives = 114/360 (31%), Gaps = 53/360 (14%)

Query: 6   PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVG-----NATQSQVLGNP 60
           P  P  P  P G G      VP Q       G    +  +   G          + +G P
Sbjct: 207 PQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKP 266

Query: 61  MGPAGSPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAP 118
            G AG+P G   +PG  G  G+  +  P   G   F + G      ++G     G PGA 
Sbjct: 267 -GAAGAP-GQPGIPGTKGLPGAPGIAGPP--GPPGFGKPGLPGLKGERGPAGLPGGPGAK 322

Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
           G   G AG PG  GL            +    +         T  A              
Sbjct: 323 G-EQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPA----------- 370

Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMT 238
               GA G   S  S     G P  P  P    P G  G+ GP G  P    P    G  
Sbjct: 371 -GYPGAKGERGSPGSD----GKPGYPGKPGLDGPKGNPGLPGPKG-DPGVGGPPGLPGPV 424

Query: 239 PLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP 298
                + +P H     P+  P    G+  T   + P           P    F  S G P
Sbjct: 425 GPAGAKGMPGHNGEAGPRGAP----GIPGTRGPIGP-----------PGIPGFPGSKGDP 469

Query: 299 PAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSV 358
            +P P  PG      +G+      PGP G      R   G P   LPG P PP  P  +V
Sbjct: 470 GSPGP--PGPAGIATKGLNGPTGPPGPPG-----PRGHSGEPG--LPGPPGPPGPPGQAV 520



 Score = 47.0 bits (110), Expect = 8e-05
 Identities = 57/187 (30%), Positives = 66/187 (35%), Gaps = 25/187 (13%)

Query: 709 PPSVPAPSDYPGQ-GSSFLG-PGTFPESFPPTTPSTPTLAEFT-----PGPPPISYQSDI 761
           P   P P   PG+ G   +G PG       P  P T  L         PGPP    +  +
Sbjct: 245 PIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFG-KPGL 303

Query: 762 PSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGL--HTSNLG--APPGPQLHHSNPPPA 817
           P   L  E+  A LP      G   P   PG PGL     N+G   P G    H  P P 
Sbjct: 304 PG--LKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGP- 360

Query: 818 SRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEPALD---LLPELTNPDELLSY 873
                 +   GP G   +  A G  G P   G  G   +P LD     P L  P      
Sbjct: 361 ------KGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGV 414

Query: 874 LGPPDLP 880
            GPP LP
Sbjct: 415 GGPPGLP 421



 Score = 37.0 bits (84), Expect = 0.082
 Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 769 EKSTACLPSQMAPAGHLDPTHNPGTPGLHT------SNLGAPPGPQLHHSNPPPASRQSL 822
           E+ T   P    P GH  P+  PG PG  +        L  PPGP        P      
Sbjct: 58  EQGTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKP 117

Query: 823 GQ-ASLGPTGELAFSPATGVMGPPSMSGAGEAPEPA 857
           G+    GP G++  +   G  GPP   G    P PA
Sbjct: 118 GERGPYGPKGDVGPAGLPGPRGPPGPPG---IPGPA 150



 Score = 34.7 bits (78), Expect = 0.41
 Identities = 45/190 (23%), Positives = 62/190 (32%), Gaps = 24/190 (12%)

Query: 703 PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAE----FTPGPP----P 754
           P  P  P   P PS  PG+   +  PG   E   P  P    + +      PG P    P
Sbjct: 64  PPGPAGPRGHPGPSGPPGK-PGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGP 122

Query: 755 ISYQSDIPSSLLTSEKSTACLPSQMAPAG--------HLDPTHNPGTPGLHTSNLGAPPG 806
              + D+  + L   +     P    PAG           PT  PG  G      GAP  
Sbjct: 123 YGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGF-PGEKGAPGV 181

Query: 807 PQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTN 866
           P ++        +  +G  + G  GE       G  GP    G G+  E  +   P +  
Sbjct: 182 PGMN------GQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKG 235

Query: 867 PDELLSYLGP 876
                  +GP
Sbjct: 236 DRGFPGEMGP 245



 Score = 33.1 bits (74), Expect = 1.2
 Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 15/90 (16%)

Query: 792 GTPGLHTSNLGAPPGPQLHHSNPPPASRQSL-GQASLGPTGELAFSPATGVMGPPSMSGA 850
           GTPG        PPGP     +P P+      G  S G  GE       G+ GPP  S  
Sbjct: 60  GTPG--------PPGPAGPRGHPGPSGPPGKPGYGSPGLQGE------PGLPGPPGPSAV 105

Query: 851 GEAPEPALDLLPELTNPDELLSYLGPPDLP 880
           G+   P L   P    P      +GP  LP
Sbjct: 106 GKPGVPGLPGKPGERGPYGPKGDVGPAGLP 135



 Score = 32.7 bits (73), Expect = 1.5
 Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 279 LQGGQYAPSTAQFAPSPGQP-PAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIP 337
           ++G Q  P     A   G P P+  P  PG+  P   G+     +PGP G        +P
Sbjct: 55  VRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP---GLQGEPGLPGPPGPSAVGKPGVP 111

Query: 338 GYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGP 391
           G P  P    P  P           P      P +P   P   S+   P   GP
Sbjct: 112 GLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG--PAGISVPGKPGQQGP 163



 Score = 31.6 bits (70), Expect = 3.4
 Identities = 37/141 (26%), Positives = 43/141 (30%), Gaps = 13/141 (9%)

Query: 8   KPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSP 67
           KP  P  P  DG      +P  +      G   +   V G   A          GP G+P
Sbjct: 387 KPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPV-GPAGAKGMPGHNGEAGPRGAP 445

Query: 68  S--------GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
                    G   +PG  G      SP   G    A  G N      G     G+ G PG
Sbjct: 446 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG 505

Query: 120 FTTGYAGGPGGLGLPSHAARP 140
                 G PG  G P  A  P
Sbjct: 506 L----PGPPGPPGPPGQAVMP 522



 Score = 30.4 bits (67), Expect = 7.7
 Identities = 44/149 (29%), Positives = 49/149 (32%), Gaps = 36/149 (24%)

Query: 709 PPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGP--PPISYQSDIPSSLL 766
           PP +P P    G       PG   E+ P   P  P     T GP  PP      IP    
Sbjct: 417 PPGLPGPVGPAGAKGM---PGHNGEAGPRGAPGIPG----TRGPIGPP-----GIPG--- 461

Query: 767 TSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQAS 826
                    P      G   P   PG  G+ T  L  P GP       PP  R   G+  
Sbjct: 462 --------FPGSKGDPGSPGP---PGPAGIATKGLNGPTGPP-----GPPGPRGHSGEPG 505

Query: 827 L-GPTGELAFSPATGVMGPPSMSGAGEAP 854
           L GP G     P   VM P     AG+ P
Sbjct: 506 LPGPPGPPG-PPGQAVM-PEGFIKAGQRP 532


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 57.0 bits (136), Expect = 8e-08
 Identities = 92/311 (29%), Positives = 106/311 (34%), Gaps = 30/311 (9%)

Query: 60  PMGPAGSPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
           P GP G   GS   PG+ G  G      P     +A   G   KG  ++G     G  G 
Sbjct: 601 PQGPKGQ-KGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKG--ERGAAGEPGPHGP 657

Query: 118 PGFTTGYAGGPGGLGLPSHAARPSTDFTQA--AAAAAVAAAAATATATATATVAALQEKQ 175
           PG   G  G  G  G P     P     Q                            EK 
Sbjct: 658 PG-VPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKG 716

Query: 176 SQELS----QYGAMGA-GQSFNSQFLQHGGPRGPSVPAG-MNPTGIGGVMGPSGLSPLAM 229
            + L+      G  GA G+      +   GP G   P G    TG+ G+ GP G S    
Sbjct: 717 PRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPG 776

Query: 230 NPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQ-GGQYAPST 288
            P    G+T     Q LP  G PG P  +  P    K   SE   G   L   G   P  
Sbjct: 777 KP----GLTGPQGPQGLP--GTPGRPGIKGEPGAPGKIVTSE---GSSMLTVPGPPGPPG 827

Query: 289 AQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYP---SSPLP 345
           A   P P  P AP P+ P   LP  Q +      PGP G    P  SIPG P     P  
Sbjct: 828 AMGPPGP--PGAPGPAGPAG-LPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGE 884

Query: 346 GNPTPPMTPSS 356
           G P PP  P S
Sbjct: 885 GLPGPPGPPGS 895



 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 51/170 (30%), Positives = 58/170 (34%), Gaps = 39/170 (22%)

Query: 713 PAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE-KS 771
           P PS  PG+      PG        T P  P     TPG P I  +   P  ++TSE  S
Sbjct: 769 PGPSGDPGK------PGL-------TGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSS 815

Query: 772 TACLPSQMAPAGHLDPTHNPGTPG----------LHTSNLGAPPGPQLHHSNP------P 815
              +P    P G + P   PG PG              NL  PPGP      P      P
Sbjct: 816 MLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGP 875

Query: 816 PASRQSLGQASLGPTG---------ELAFSPATGVMGPPSMSGAGEAPEP 856
           P  R   G+   GP G         E   S   G  GPP   G    P P
Sbjct: 876 PGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGP 925



 Score = 44.3 bits (103), Expect = 5e-04
 Identities = 104/450 (23%), Positives = 148/450 (32%), Gaps = 77/450 (17%)

Query: 4    MNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGS-LSVVTTVWGVGNATQSQVLGNPMG 62
            +N   P  PP P G       S+P       P G  L       G   +     L  P G
Sbjct: 853  LNLQGPPGPPGPRGPPG---PSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPG 909

Query: 63   PAG--SPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAP 118
            P G   P G    PG  G  G   L      G  +F       G   QG     G P  P
Sbjct: 910  PPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSF-------GLNLQGPPGPPG-PQGP 961

Query: 119  GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
                G  G PG LG+PS  +   +  T   +                 ++++  ++  Q 
Sbjct: 962  KGDKGDPGVPGALGIPSGPSEGGSSSTMYVS----GPPGPPGPPGPPGSISSSGQEIQQY 1017

Query: 179  LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGM- 237
            +S+Y    + +S+ S      GP GP  P G   T  G     S L+   ++  R +G  
Sbjct: 1018 ISEYMQSDSIRSYLSGV---QGPPGPPGPPGPVTTITGETFDYSELASHVVSYLRTSGYG 1074

Query: 238  TPLYAG-----------------QRLPQH-----GYPGPPQAQPLPRQGVKRTYSEVYPG 275
              L++                  Q L Q+     G PGPP A       +   Y+E+   
Sbjct: 1075 VSLFSSSISSEDILAVLQRDDVRQYLRQYLMGPRGPPGPPGASG-DGSLLSLDYAEL--S 1131

Query: 276  QQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQ----QGMTQSLSVPGPTG---- 327
             + L     +  +      PG P  P  SY      L+    +G+      PGP G    
Sbjct: 1132 SRILSYMSSSGISIGLPGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPPGPPGPPGIPGN 1191

Query: 328  -------------LHYKPTRSIPGYPSSPLPGNPT-PPMTPSSSVPYMSPNQE-VKSPFL 372
                         LH      IPG P  P P  P  PP    +   Y + N +  +S  +
Sbjct: 1192 VWSSISVEDLSSYLHTAGLSFIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELI 1251

Query: 373  -----PDLKPNLNSLHSSPSGSGPCDELRL 397
                 PD++  +      P   GP  + RL
Sbjct: 1252 SYLTSPDVRSFIVGPPGPPGPQGPPGDSRL 1281



 Score = 42.7 bits (99), Expect = 0.001
 Identities = 74/300 (24%), Positives = 103/300 (34%), Gaps = 56/300 (18%)

Query: 60   PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
            P GP G P G    PGV+G  +   +              N    +  + S    P    
Sbjct: 1216 PPGPPGPP-GPRGPPGVSGALATYAAE-------------NSDSFRSELISYLTSPDVRS 1261

Query: 120  FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
            F  G  G PG  G P  +   STD      A+    +++++ +++    ++     S   
Sbjct: 1262 FIVGPPGPPGPQGPPGDSRLLSTD------ASHSRGSSSSSHSSSVRRGSSYSSSMSTGG 1315

Query: 180  SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTP 239
               G++GAG +F     +  G RGP           G  +GP G          AA    
Sbjct: 1316 GGAGSLGAGGAFG----EAAGDRGP----------YGTDIGPGG-------GYGAAAEGG 1354

Query: 240  LYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPP 299
            +YAG      G  G   A  L    +    SE    Q  LQG  Y        P P  PP
Sbjct: 1355 MYAG----NGGLLGADFAGDLDYNELAVRVSESMQRQGLLQGMAYTVQGPPGQPGPQGPP 1410

Query: 300  APS---PSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPG-----YPSSPLPGNPTPP 351
              S    +Y      L        ++ GP G   K     PG      P+ P PG+P PP
Sbjct: 1411 GISKVFSAYSNVTADLMDFFQTYGAIQGPPG--QKGEMGTPGPKGDRGPAGP-PGHPGPP 1467



 Score = 31.6 bits (70), Expect = 3.4
 Identities = 42/156 (26%), Positives = 57/156 (36%), Gaps = 33/156 (21%)

Query: 736 PPTTPST--PTLAEFTPGPP----PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTH 789
           PP  P +  P  +  +PGP     P+  Q       L  E     +     P G   P  
Sbjct: 657 PPGVPGSVGPKGSSGSPGPQGPPGPVGLQG------LRGEVGLPGVKGDKGPMGPPGPKG 710

Query: 790 NPGTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLGQAS----LGPTGELAFSPATGVMGP 844
           + G  G     L   PG + L  +   P ++ ++G A      GP GE   +   G+ GP
Sbjct: 711 DQGEKG--PRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGP 768

Query: 845 PSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLP 880
           P  SG     +P     P LT P       GP  LP
Sbjct: 769 PGPSG-----DPG---KPGLTGPQ------GPQGLP 790



 Score = 30.4 bits (67), Expect = 7.7
 Identities = 42/151 (27%), Positives = 53/151 (35%), Gaps = 54/151 (35%)

Query: 750  PGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPG-------------- 795
            PG P  SY+ ++ S L  SE         + P G   P   PG PG              
Sbjct: 1154 PGLPGTSYE-ELLSLLRGSE-----FRGIVGPPG---PPGPPGIPGNVWSSISVEDLSSY 1204

Query: 796  LHTSNLGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA----- 850
            LHT+ L   PGP                    GP G        G  GPP +SGA     
Sbjct: 1205 LHTAGLSFIPGPP-------------------GPPGP------PGPRGPPGVSGALATYA 1239

Query: 851  -GEAPEPALDLLPELTNPDELLSYLGPPDLP 880
               +     +L+  LT+PD     +GPP  P
Sbjct: 1240 AENSDSFRSELISYLTSPDVRSFIVGPPGPP 1270


>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
          Length = 1388

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 97/376 (25%), Positives = 121/376 (32%), Gaps = 83/376 (22%)

Query: 6   PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
           P  P LP  P   G+  +   P       PAG                      P GP G
Sbjct: 624 PGPPGLPGIPGKPGTDVFMGPPGSPGEDGPAGE-------------------PGPPGPEG 664

Query: 66  SPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTG 123
            P   G++ +PG+ G   A               G N    ++G     G PG PG   G
Sbjct: 665 QPGVDGATGLPGMKGEKGAR--------------GPNGSVGEKGDPGNRGLPGPPG-KKG 709

Query: 124 YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYG 183
            AG PG +G P     P                    T  + +T    + K S+  +  G
Sbjct: 710 QAGPPGVMGPPGPPGPPGPP-----GPGCTMGLGFEDTEGSGSTQLLNEPKLSRPTAAIG 764

Query: 184 AMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSG-------LSPLAMNPTRA-- 234
             G             G RGP    GM+   I G  GP G       LS   +N T    
Sbjct: 765 LKG-----------EKGDRGPKGERGMDGASIVGPPGPRGPPGHIKVLSNSLINITHGFM 813

Query: 235 -AGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPST--AQF 291
                P   G   P  G PG P   P PR     T    +PG +  QG +  P     + 
Sbjct: 814 NFSDIPELVGPPGPD-GLPGLP-GFPGPRGPKGDTGLPGFPGLKGEQGEKGEPGAILTED 871

Query: 292 AP---------SPGQPPAPSP----SYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPG 338
            P          PG   AP P      PGH+   + G+      PG  GL  K T+  PG
Sbjct: 872 IPLERLMGKKGEPGMHGAPGPMGPKGPPGHK--GEFGLPGRPGRPGLNGL--KGTKGDPG 927

Query: 339 YPSSPLPGNPTPPMTP 354
                 PG P PP  P
Sbjct: 928 VIMQGPPGLPGPPGPP 943



 Score = 40.4 bits (93), Expect = 0.007
 Identities = 56/206 (27%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 669 PDGPALKRCRTVSPAHVLMPSVMEMIAALGP----GAAPFAPLQPPSVPAPSDYPGQGS- 723
           PDGP L    TV+P   + P+  E +   G     G    A  + P  P PS   G  + 
Sbjct: 531 PDGPPLP-LPTVAPERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGPVGPTAG 589

Query: 724 -----SFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE-KSTACLPS 777
                S LG G+   S       +  L    PGPP       IP    T         P 
Sbjct: 590 AEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGPPGPPGLPGIPGKPGTDVFMGPPGSPG 649

Query: 778 QMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQAS-------LGPT 830
           +  PAG   P    G PG+     GA   P +           S+G+          GP 
Sbjct: 650 EDGPAGEPGPPGPEGQPGVD----GATGLPGMKGEKGARGPNGSVGEKGDPGNRGLPGPP 705

Query: 831 GELAFSPATGVMGPPSMSGAGEAPEP 856
           G+   +   GVMGPP   G    P P
Sbjct: 706 GKKGQAGPPGVMGPPGPPGPPGPPGP 731



 Score = 31.2 bits (69), Expect = 4.5
 Identities = 39/165 (23%), Positives = 50/165 (30%), Gaps = 25/165 (15%)

Query: 114  YPGAPGFTT--GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
            +PG+P   T  G  G  G  GLP           Q      +  A               
Sbjct: 973  HPGSPELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPLDLAYLRHFLNNL------ 1026

Query: 172  QEKQSQELSQYGAMGAGQSFNSQFLQHGGP-----------RGPSVPAGMNPTGIGGVMG 220
             + ++ +    G  G     N  FL  G P           +G +V     P G  G+ G
Sbjct: 1027 -KGENGDKGFKGEKGEKGDINGSFLMSGPPGLPGNPGPAGQKGETVVGPQGPPGAPGLPG 1085

Query: 221  PSGL----SPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP 261
            P G      P    P    G  P   G  +   G PGPP    LP
Sbjct: 1086 PPGFGRPGDPGPPGPPGPPG-PPAILGAAVALPGPPGPPGQPGLP 1129



 Score = 30.8 bits (68), Expect = 5.9
 Identities = 35/114 (30%), Positives = 43/114 (37%), Gaps = 19/114 (16%)

Query: 250  GYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQG--GQYAPSTAQFAPS--PGQPPAPSPSY 305
            G PGPP      R  +     E   G +  +G  G+       F  S  PG P  P P+ 
Sbjct: 1008 GPPGPPLDLAYLRHFLNNLKGE--NGDKGFKGEKGEKGDINGSFLMSGPPGLPGNPGPAG 1065

Query: 306  PGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVP 359
                   Q+G T    V GP G    P   +PG P    PG+P PP  P    P
Sbjct: 1066 -------QKGET----VVGPQGPPGAP--GLPGPPGFGRPGDPGPPGPPGPPGP 1106


>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
           [Homo sapiens]
          Length = 2191

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 90/330 (27%), Positives = 109/330 (33%), Gaps = 52/330 (15%)

Query: 58  GNPMGPAGSPSGSSMMPGV----AGGSSALTSPQCLGQ-QAFAEGGANKGYVQQGVYSRG 112
           G   GP     G    PG+    +  ++A  +P  +   Q   EG  N        YSR 
Sbjct: 187 GGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRP 246

Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
           G  G  G   G  GG GG G    A          AAAAA AAAAA              
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG--------- 297

Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPR----GPSVPAGMNPTGIGGVMG-------- 220
                    YG   AG    S   Q GG      G    A ++    G   G        
Sbjct: 298 -------GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQ 350

Query: 221 ---PSGLSP-LAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQ 276
              PSG +P L    T  + M   Y G   P++  P  P   P   Q           GQ
Sbjct: 351 NQHPSGATPTLNQLLTSPSPMMRSYGGS-YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQ 409

Query: 277 QYL--------QGGQYAPSTAQFAPSPGQP-PAPSPSYPGHRLPLQQGMTQSLSV---PG 324
           Q           G QYA ++  +A +  +  PA SP  PG  +   QG      V   P 
Sbjct: 410 QAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQ 469

Query: 325 PTGLHYKPTRSIPGYPSSPLPGNPTPPMTP 354
             G+   P  S P   SSP PG    P  P
Sbjct: 470 LYGMGSNP-HSQP-QQSSPYPGGSYGPPGP 497



 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 96/388 (24%), Positives = 121/388 (31%), Gaps = 75/388 (19%)

Query: 62  GPAGSP--SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
           G   SP   G  MM G  GG +A  S    G  A    G  + +  Q  +  G  P    
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAA----GGFQRFAGQNQHPSGATPTLNQ 363

Query: 120 FTTG-------YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA-------TAT 165
             T        Y G       PS    P +     AAAA  AA    A A          
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGA 423

Query: 166 ATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPA-------GMNPTGI--- 215
              AA     + +   + AM  G    +     G P  P V         G NP      
Sbjct: 424 QYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQ 483

Query: 216 -----GGVMGPSGLSPLAMNPTRAAGMTP-LYAGQRLPQHGYPG-----------PPQ-- 256
                GG  GP G       P    G TP   AG + PQ    G           PPQ  
Sbjct: 484 SSPYPGGSYGPPGPQRY---PIGIQGRTPGAMAGMQYPQQQDSGDATWKETFWLMPPQYG 540

Query: 257 ---AQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP-----------PAPS 302
                   +QG +  YS+           QY PS +Q    P Q            P  +
Sbjct: 541 QQGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLA 600

Query: 303 PSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPYM 361
           P  P H  L L Q    S S+P  +G       SI   P+       +      S+    
Sbjct: 601 PGKPNHEDLNLIQQERPS-SLPDLSG-------SIDDLPTGTEATLSSAVSASGSTSSQG 652

Query: 362 SPNQEVKSPFLPDLKPNLNSLHSSPSGS 389
             +   +SPF P   P+L+S+   PS S
Sbjct: 653 DQSNPAQSPFSPHASPHLSSIPGGPSPS 680


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
           [Homo sapiens]
          Length = 2231

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 90/330 (27%), Positives = 109/330 (33%), Gaps = 52/330 (15%)

Query: 58  GNPMGPAGSPSGSSMMPGV----AGGSSALTSPQCLGQ-QAFAEGGANKGYVQQGVYSRG 112
           G   GP     G    PG+    +  ++A  +P  +   Q   EG  N        YSR 
Sbjct: 187 GGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRP 246

Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
           G  G  G   G  GG GG G    A          AAAAA AAAAA              
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG--------- 297

Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPR----GPSVPAGMNPTGIGGVMG-------- 220
                    YG   AG    S   Q GG      G    A ++    G   G        
Sbjct: 298 -------GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQ 350

Query: 221 ---PSGLSP-LAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQ 276
              PSG +P L    T  + M   Y G   P++  P  P   P   Q           GQ
Sbjct: 351 NQHPSGATPTLNQLLTSPSPMMRSYGGS-YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQ 409

Query: 277 QYL--------QGGQYAPSTAQFAPSPGQP-PAPSPSYPGHRLPLQQGMTQSLSV---PG 324
           Q           G QYA ++  +A +  +  PA SP  PG  +   QG      V   P 
Sbjct: 410 QAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQ 469

Query: 325 PTGLHYKPTRSIPGYPSSPLPGNPTPPMTP 354
             G+   P  S P   SSP PG    P  P
Sbjct: 470 LYGMGSNP-HSQP-QQSSPYPGGSYGPPGP 497



 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 94/375 (25%), Positives = 119/375 (31%), Gaps = 62/375 (16%)

Query: 62  GPAGSP--SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
           G   SP   G  MM G  GG +A  S    G  A    G  + +  Q  +  G  P    
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAA----GGFQRFAGQNQHPSGATPTLNQ 363

Query: 120 FTTG-------YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA-------TAT 165
             T        Y G       PS    P +     AAAA  AA    A A          
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGA 423

Query: 166 ATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPA-------GMNPTGI--- 215
              AA     + +   + AM  G    +     G P  P V         G NP      
Sbjct: 424 QYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQ 483

Query: 216 -----GGVMGPSGLSPLAMNPTRAAGMTP-LYAGQRLPQHGYP---GPPQAQPLPRQGVK 266
                GG  GP G       P    G TP   AG + PQ   P   G        +QG +
Sbjct: 484 SSPYPGGSYGPPGPQRY---PIGIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQ 540

Query: 267 RTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP-----------PAPSPSYPGHR-LPLQQ 314
             YS+           QY PS +Q    P Q            P  +P  P H  L L Q
Sbjct: 541 PYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQ 600

Query: 315 GMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPD 374
               S S+P  +G       SI   P+       +      S+      +   +SPF P 
Sbjct: 601 QERPS-SLPDLSG-------SIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPH 652

Query: 375 LKPNLNSLHSSPSGS 389
             P+L+S+   PS S
Sbjct: 653 ASPHLSSIPGGPSPS 667



 Score = 38.9 bits (89), Expect = 0.022
 Identities = 96/409 (23%), Positives = 145/409 (35%), Gaps = 72/409 (17%)

Query: 9    PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGV-GNATQSQVLGNPMGPAGSP 67
            P++ P P   G        +QQS +  +G+     + +G  GN ++      P   +G P
Sbjct: 741  PSMSPHPSPGGQMHAGISSFQQSNS--SGTYGPQMSQYGPQGNYSR------PPAYSGVP 792

Query: 68   SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANK-GYVQQGVYSRGGYPG--------AP 118
            S S   PG   G SA  + Q  GQ      GA   G +         +PG        +P
Sbjct: 793  SASYSGPGPGMGISA--NNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSP 850

Query: 119  GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
            G +    GGPG +G P     P+ +     AAAAV  AAA +  +   +   +   QS  
Sbjct: 851  GMSQ--QGGPG-MGPPM----PTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMN--QSGL 901

Query: 179  LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMT 238
            ++         + +S  +    P     P  M P  +       GL+ + M+P  +    
Sbjct: 902  MASSSPYSQPMNNSSSLMNTQAP-----PYSMAPAMVNSSAASVGLADM-MSPGESKLPL 955

Query: 239  PLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP 298
            PL A          G  +  P P    K +YS     Q                P+PG  
Sbjct: 956  PLKAD---------GKEEGTPQPESKSKDSYSSQGISQP---------------PTPGNL 991

Query: 299  PAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSV 358
            P PSP  P           +S S+  P           P  PSSP   + T      + V
Sbjct: 992  PVPSPMSPSSASISSFHGDESDSISSP---------GWPKTPSSPKSSSSTTTGEKITKV 1042

Query: 359  PYMSPNQEVK---SPFLPDLKPNLNSLHSSPS-GSGPCDELRLTFPVRD 403
              +    E K     +L  ++   + + S P+ G  P D  RL   V++
Sbjct: 1043 YELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKE 1091


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
           [Homo sapiens]
          Length = 2178

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 90/330 (27%), Positives = 109/330 (33%), Gaps = 52/330 (15%)

Query: 58  GNPMGPAGSPSGSSMMPGV----AGGSSALTSPQCLGQ-QAFAEGGANKGYVQQGVYSRG 112
           G   GP     G    PG+    +  ++A  +P  +   Q   EG  N        YSR 
Sbjct: 187 GGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRP 246

Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
           G  G  G   G  GG GG G    A          AAAAA AAAAA              
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG--------- 297

Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPR----GPSVPAGMNPTGIGGVMG-------- 220
                    YG   AG    S   Q GG      G    A ++    G   G        
Sbjct: 298 -------GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQ 350

Query: 221 ---PSGLSP-LAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQ 276
              PSG +P L    T  + M   Y G   P++  P  P   P   Q           GQ
Sbjct: 351 NQHPSGATPTLNQLLTSPSPMMRSYGGS-YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQ 409

Query: 277 QYL--------QGGQYAPSTAQFAPSPGQP-PAPSPSYPGHRLPLQQGMTQSLSV---PG 324
           Q           G QYA ++  +A +  +  PA SP  PG  +   QG      V   P 
Sbjct: 410 QAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQ 469

Query: 325 PTGLHYKPTRSIPGYPSSPLPGNPTPPMTP 354
             G+   P  S P   SSP PG    P  P
Sbjct: 470 LYGMGSNP-HSQP-QQSSPYPGGSYGPPGP 497



 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 94/375 (25%), Positives = 119/375 (31%), Gaps = 62/375 (16%)

Query: 62  GPAGSP--SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
           G   SP   G  MM G  GG +A  S    G  A    G  + +  Q  +  G  P    
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAA----GGFQRFAGQNQHPSGATPTLNQ 363

Query: 120 FTTG-------YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA-------TAT 165
             T        Y G       PS    P +     AAAA  AA    A A          
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGA 423

Query: 166 ATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPA-------GMNPTGI--- 215
              AA     + +   + AM  G    +     G P  P V         G NP      
Sbjct: 424 QYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQ 483

Query: 216 -----GGVMGPSGLSPLAMNPTRAAGMTP-LYAGQRLPQHGYP---GPPQAQPLPRQGVK 266
                GG  GP G       P    G TP   AG + PQ   P   G        +QG +
Sbjct: 484 SSPYPGGSYGPPGPQRY---PIGIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQ 540

Query: 267 RTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP-----------PAPSPSYPGHR-LPLQQ 314
             YS+           QY PS +Q    P Q            P  +P  P H  L L Q
Sbjct: 541 PYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQ 600

Query: 315 GMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPD 374
               S S+P  +G       SI   P+       +      S+      +   +SPF P 
Sbjct: 601 QERPS-SLPDLSG-------SIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPH 652

Query: 375 LKPNLNSLHSSPSGS 389
             P+L+S+   PS S
Sbjct: 653 ASPHLSSIPGGPSPS 667


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,379,688
Number of Sequences: 37866
Number of extensions: 3262941
Number of successful extensions: 26480
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 1338
Number of HSP's that attempted gapping in prelim test: 14636
Number of HSP's gapped (non-prelim): 9588
length of query: 894
length of database: 18,247,518
effective HSP length: 111
effective length of query: 783
effective length of database: 14,044,392
effective search space: 10996758936
effective search space used: 10996758936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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