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Search of human proteins with 54607110
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
sapiens]
(894 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo s... 1856 0.0
gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo s... 1842 0.0
gi|31543543 retinoic acid induced 17 [Homo sapiens] 1054 0.0
gi|27532984 protein inhibitor of activated STAT X isoform alpha ... 92 2e-18
gi|56699458 protein inhibitor of activated STAT X isoform beta [... 92 2e-18
gi|24850133 protein inhibitor of activated STAT, 4 [Homo sapiens] 88 4e-17
gi|7706637 protein inhibitor of activated STAT, 1 [Homo sapiens] 87 9e-17
gi|115298686 protein inhibitor of activated STAT, 3 [Homo sapiens] 81 4e-15
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 65 3e-10
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 65 4e-10
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 65 4e-10
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 65 4e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 63 1e-09
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 63 1e-09
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 63 1e-09
gi|153792074 proline rich 12 [Homo sapiens] 63 1e-09
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 59 2e-08
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 59 2e-08
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 59 3e-08
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 59 3e-08
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 59 3e-08
gi|110832843 TBP-associated factor 4 [Homo sapiens] 58 3e-08
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 58 4e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 57 6e-08
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 57 8e-08
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 57 8e-08
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 56 1e-07
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 56 1e-07
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 56 1e-07
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 56 1e-07
>gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
sapiens]
Length = 894
Score = 1856 bits (4808), Expect = 0.0
Identities = 894/894 (100%), Positives = 894/894 (100%)
Query: 1 MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP
Sbjct: 1 MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
Query: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF
Sbjct: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
Query: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS
Sbjct: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
Query: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL
Sbjct: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
Query: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA
Sbjct: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
Query: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPY 360
PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPY
Sbjct: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPY 360
Query: 361 MSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQHNLAVSN 420
MSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQHNLAVSN
Sbjct: 361 MSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQHNLAVSN 420
Query: 421 HVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTS 480
HVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTS
Sbjct: 421 HVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTS 480
Query: 481 HKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCIT 540
HKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCIT
Sbjct: 481 HKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCIT 540
Query: 541 KIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLES 600
KIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLES
Sbjct: 541 KIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLES 600
Query: 601 YLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVK 660
YLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVK
Sbjct: 601 YLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVK 660
Query: 661 PDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPG 720
PDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPG
Sbjct: 661 PDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPG 720
Query: 721 QGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMA 780
QGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMA
Sbjct: 721 QGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMA 780
Query: 781 PAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATG 840
PAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATG
Sbjct: 781 PAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATG 840
Query: 841 VMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNNDDLLSLFENN 894
VMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNNDDLLSLFENN
Sbjct: 841 VMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNNDDLLSLFENN 894
>gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
sapiens]
Length = 920
Score = 1842 bits (4771), Expect = 0.0
Identities = 894/920 (97%), Positives = 894/920 (97%), Gaps = 26/920 (2%)
Query: 1 MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP
Sbjct: 1 MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
Query: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF
Sbjct: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
Query: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS
Sbjct: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
Query: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL
Sbjct: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
Query: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA
Sbjct: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
Query: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT--------------------------R 334
PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT R
Sbjct: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTR 360
Query: 335 SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE 394
SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE
Sbjct: 361 SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE 420
Query: 395 LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN 454
LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN
Sbjct: 421 LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN 480
Query: 455 TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL 514
TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL
Sbjct: 481 TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL 540
Query: 515 VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC 574
VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC
Sbjct: 541 VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC 600
Query: 575 PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI 634
PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI
Sbjct: 601 PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI 660
Query: 635 LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI 694
LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI
Sbjct: 661 LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI 720
Query: 695 AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP 754
AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP
Sbjct: 721 AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP 780
Query: 755 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 814
ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP
Sbjct: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840
Query: 815 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL 874
PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL
Sbjct: 841 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL 900
Query: 875 GPPDLPTNNNDDLLSLFENN 894
GPPDLPTNNNDDLLSLFENN
Sbjct: 901 GPPDLPTNNNDDLLSLFENN 920
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 1054 bits (2726), Expect = 0.0
Identities = 567/956 (59%), Positives = 669/956 (69%), Gaps = 79/956 (8%)
Query: 1 MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
++SM+ MKP L H DGSF Y+SVPWQQ+ QP GSLSVVTTVWGV N +QSQVLGNP
Sbjct: 129 LSSMSSMKPTLS---HSDGSFPYDSVPWQQNTNQPPGSLSVVTTVWGVTNTSQSQVLGNP 185
Query: 61 MGPAGSP---SGSSMMPGVAGGSSALTSPQCLGQQA--FAEGGANKGYVQQGVYSRGGYP 115
M A +P G+ M G+ + L SPQ GQQ A+ G + Y+QQ +Y R YP
Sbjct: 186 MANANNPMNPGGNPMASGMTTSNPGLNSPQFAGQQQQFSAKAGPAQPYIQQSMYGRPNYP 245
Query: 116 GAPGFTTGYAGGPG---GLGLPSHAARPSTDFTQ---AAAAAAVAAAAATATATATATVA 169
G+ GF Y GGP G+G+P H RP DFTQ AAAAAAVAAAAATATATATATVA
Sbjct: 246 GSGGFGASYPGGPNAPAGMGIPPHT-RPPADFTQPAAAAAAAAVAAAAATATATATATVA 304
Query: 170 ALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAG-MNPTGIGGVMGPSGLS--P 226
ALQE Q+++++QYG MG Q++NSQF+ GPRGP+ G MNP + M PSG+S P
Sbjct: 305 ALQETQNKDINQYGPMGPTQAYNSQFMNQPGPRGPASMGGSMNPASMAAGMTPSGMSGPP 364
Query: 227 LAMNPTRAAGMTPLYA-GQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYA 285
+ MN R G++P GQR+PQ YPGP + Q LP Q +KR Y PG+ QY
Sbjct: 365 MGMNQPRPPGISPFGTHGQRMPQQTYPGP-RPQSLPIQNIKRPY----PGEPNYGNQQYG 419
Query: 286 PSTAQFAPSPGQPPAP-------SPSYPGHRLPLQQGMTQSLSVPGPT---GLHYKPT-- 333
P++ QF PGQ PAP SP+YPG R+P Q Q P PT G +YKP
Sbjct: 420 PNS-QFPTQPGQYPAPNPPRPLTSPNYPGQRMPSQPSSGQ---YPPPTVNMGQYYKPEQF 475
Query: 334 ------------------------RSIP--GYPSSPLPGNPTPPMTPSSSVP-YMSPNQE 366
R +P YP SP+PGNPTPPMTP SS+P Y+SP+Q+
Sbjct: 476 NGQNNTFSGSSYSNYSQGNVNRPPRPVPVANYPHSPVPGNPTPPMTPGSSIPPYLSPSQD 535
Query: 367 VKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLR 426
VK PF PD+KPN+++L P+ DELRLTFPVRDGVVLEPFRL+HNLAVSNHVF LR
Sbjct: 536 VKPPFPPDIKPNMSALPPPPANHN--DELRLTFPVRDGVVLEPFRLEHNLAVSNHVFHLR 593
Query: 427 DSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTSHKPLYL 486
+V++TL+ R DLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTSHKPL+L
Sbjct: 594 PTVHQTLMWRSDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTSHKPLHL 653
Query: 487 KHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNF 546
KHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNF
Sbjct: 654 KHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNF 713
Query: 547 SS-GTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLN 605
SS G NGEDGVEQTAIKVSLKCPITFRRIQLPARGHDC+H+QCFDLESYLQLN
Sbjct: 714 SSVAASSGNTTLNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCKHVQCFDLESYLQLN 773
Query: 606 CERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVKPDMHI 665
CERGTWRCPVCNKTALLEGLEVDQYM GIL IQ+S++EE+TIDPTCSW+PVP+K D+HI
Sbjct: 774 CERGTWRCPVCNKTALLEGLEVDQYMWGILNAIQHSEFEEVTIDPTCSWRPVPIKSDLHI 833
Query: 666 KEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPGQGSSF 725
K++PDG KR +T+SP+ ++MP+VMEMIAALGPG +P+ PP +DY QG+++
Sbjct: 834 KDDPDGIPSKRFKTMSPSQMIMPNVMEMIAALGPGPSPYPLPPPPGGTNSNDYSSQGNNY 893
Query: 726 LGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTA-CLPSQMAPAGH 784
G G F FP P ++ +F GPP +S+ D+P+++ EK + + M AG
Sbjct: 894 QGHGNF--DFPHGNPGGTSMNDFMHGPPQLSHPPDMPNNMAALEKPLSHPMQETMPHAGS 951
Query: 785 LDPTHNPGTPGLHTSNLGAPPGPQLHHSN-PPPASRQSLGQ-----ASLGPTGELAFSPA 838
D H GLH + + GP LHHS PPP Q Q S P +L F+P+
Sbjct: 952 SDQPHPSIQQGLHVPHPSSQSGPPLHHSGAPPPPPSQPPRQPPQAAPSSHPHSDLTFNPS 1011
Query: 839 TGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNNDDLLSLFENN 894
+ + G GA + PEP+LDLLPELTNPDELLSYL PPDLP+N+NDDLLSLFENN
Sbjct: 1012 SALEGQAGAQGASDMPEPSLDLLPELTNPDELLSYLDPPDLPSNSNDDLLSLFENN 1067
>gi|27532984 protein inhibitor of activated STAT X isoform alpha
[Homo sapiens]
Length = 572
Score = 92.0 bits (227), Expect = 2e-18
Identities = 93/349 (26%), Positives = 148/349 (42%), Gaps = 46/349 (13%)
Query: 354 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRL-TFPVRD--GVVLEPF 410
PS+SV SP+ V S L D KP SP +++L P D V+++P
Sbjct: 105 PSTSVTPHSPSSPVGSVLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPT 164
Query: 411 RLQHN----LAVSNHVFQLRDSVYKTLIMRPD----------LELQFK-CYHHEDRQMNT 455
L + +F L + + + D +++Q + C
Sbjct: 165 SLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQED 224
Query: 456 NWPASVQVSVNA--------TPLTIERGDNKTSHKPLYLKHVCQPGR---NTIQIT-VTA 503
N+P S+ + VN P + K +PL + + + N I I+ +
Sbjct: 225 NYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASE 284
Query: 504 CCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGV 563
++ + LV + + +LQ L K + +H IK T P+ E +
Sbjct: 285 IGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEKL-------TADPDSE--I 335
Query: 564 EQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLE 623
T+++VSL CP+ R+ +P R C H+QCFD YLQ+N ++ TW CPVC+K A E
Sbjct: 336 ATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 395
Query: 624 GLEVDQYMLGILIYIQN--SDYEEITIDPTCSWKPV-PVKPDMHIKEEP 669
L +D G+ + I N SD +EI SW P+ P K M + +P
Sbjct: 396 SLILD----GLFMEILNDCSDVDEIKFQEDGSWCPMRPKKEAMKVSSQP 440
>gi|56699458 protein inhibitor of activated STAT X isoform beta
[Homo sapiens]
Length = 621
Score = 92.0 bits (227), Expect = 2e-18
Identities = 93/349 (26%), Positives = 148/349 (42%), Gaps = 46/349 (13%)
Query: 354 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRL-TFPVRD--GVVLEPF 410
PS+SV SP+ V S L D KP SP +++L P D V+++P
Sbjct: 105 PSTSVTPHSPSSPVGSVLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPT 164
Query: 411 RLQHN----LAVSNHVFQLRDSVYKTLIMRPD----------LELQFK-CYHHEDRQMNT 455
L + +F L + + + D +++Q + C
Sbjct: 165 SLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQED 224
Query: 456 NWPASVQVSVNA--------TPLTIERGDNKTSHKPLYLKHVCQPGR---NTIQIT-VTA 503
N+P S+ + VN P + K +PL + + + N I I+ +
Sbjct: 225 NYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASE 284
Query: 504 CCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGV 563
++ + LV + + +LQ L K + +H IK T P+ E +
Sbjct: 285 IGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEKL-------TADPDSE--I 335
Query: 564 EQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLE 623
T+++VSL CP+ R+ +P R C H+QCFD YLQ+N ++ TW CPVC+K A E
Sbjct: 336 ATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 395
Query: 624 GLEVDQYMLGILIYIQN--SDYEEITIDPTCSWKPV-PVKPDMHIKEEP 669
L +D G+ + I N SD +EI SW P+ P K M + +P
Sbjct: 396 SLILD----GLFMEILNDCSDVDEIKFQEDGSWCPMRPKKEAMKVSSQP 440
>gi|24850133 protein inhibitor of activated STAT, 4 [Homo sapiens]
Length = 510
Score = 87.8 bits (216), Expect = 4e-17
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 21/223 (9%)
Query: 445 CYHHEDRQMNTNWPASVQVSVNAT--------PLTIERGDNKTSHKPLYLKHVCQPGRNT 496
CY +P ++ V VN + P + K +P+ L H+ T
Sbjct: 196 CYSDTSCPQEDQYPPNIAVKVNHSYCSVPGYYPSNKPGVEPKRPCRPINLTHLMYLSSAT 255
Query: 497 IQITVT--ACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGT 554
+ITVT S+ L LV + + +LQ L + E C +K
Sbjct: 256 NRITVTWGNYGKSYSVALYLVRQLTSSELLQRLKTIGVKHPELCKALVKEKLRLD----- 310
Query: 555 PGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCP 614
P+ E + T ++VSL CP+ R+ +P R C H+QCFD YLQ+N ++ TW CP
Sbjct: 311 --PDSE--IATTGVRVSLICPLVKMRLSVPCRAETCAHLQCFDAVFYLQMNEKKPTWMCP 366
Query: 615 VCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPV 657
VC+K A + L +D + IL +++D E +D SW P+
Sbjct: 367 VCDKPAPYDQLIIDGLLSKILSECEDADEIEYLVDG--SWCPI 407
>gi|7706637 protein inhibitor of activated STAT, 1 [Homo sapiens]
Length = 651
Score = 86.7 bits (213), Expect = 9e-17
Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 24/237 (10%)
Query: 439 LELQFKCYHHEDRQMNTNWPASVQVSVNATPLTI-------ERG-DNKTSHKPLYLKHVC 490
++L+F C ++P ++ V VN P ++ + G + K +P+ + +
Sbjct: 198 VQLRF-CLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRPINITSLV 256
Query: 491 QPGR---NTIQITVTA-CCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNF 546
+ NTI ++ TA ++ + LV + S +LQ L K + +H IK
Sbjct: 257 RLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLLQRLRAKGIRNPDHSRALIKEKL 316
Query: 547 SSGTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNC 606
T P+ E + T+++VSL CP+ R+ +P R C H+QCFD Y+Q+N
Sbjct: 317 -------TADPDSE--IATTSLRVSLLCPLGKMRLTIPCRALTCSHLQCFDATLYIQMNE 367
Query: 607 ERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVKPDM 663
++ TW CPVC+K A E L +D + IL Y +D +EI +W P+ K ++
Sbjct: 368 KKPTWVCPVCDKKAPYEHLIIDGLFMEILKYC--TDCDEIQFKEDGTWAPMRSKKEV 422
>gi|115298686 protein inhibitor of activated STAT, 3 [Homo sapiens]
Length = 628
Score = 81.3 bits (199), Expect = 4e-15
Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 514 LVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLK 573
LV + + ++LQ L K + +H IK T P+ E V T+++VSL
Sbjct: 276 LVRQLTAGTLLQKLRAKGIRNPDHSRALIKEKL-------TADPDSE--VATTSLRVSLM 326
Query: 574 CPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLG 633
CP+ R+ +P R C H+Q FD YLQ+N ++ TW CPVC+K A E L +D +
Sbjct: 327 CPLGKMRLTVPCRALTCAHLQSFDAALYLQMNEKKPTWTCPVCDKKAPYESLIIDGLFME 386
Query: 634 ILIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPAL 674
IL SD +EI SW P+ K + P G L
Sbjct: 387 IL--SSCSDCDEIQFMEDGSWCPMKPKKEASEVCPPPGYGL 425
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 65.1 bits (157), Expect = 3e-10
Identities = 60/196 (30%), Positives = 80/196 (40%), Gaps = 23/196 (11%)
Query: 200 GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQ- 258
G PSV +GM P G +G SP A + A+G +P Y+ P G PG P
Sbjct: 1529 GAWSPSVGSGMTP-------GAAGFSPSAASD--ASGFSPGYSPAWSPTPGSPGSPGPSS 1579
Query: 259 ---PLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQG 315
P P + +YS P + G Y P + ++P+ SPSY P
Sbjct: 1580 PYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYS----PTSPN 1635
Query: 316 MTQSLSVPGPTGLHYKPTRSIPGY-PSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPD 374
+ + PT Y PT P Y P+SP +P +P+S P SP SP P
Sbjct: 1636 YSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPS 1691
Query: 375 LKPNLNSLH-SSPSGS 389
P S +SPS S
Sbjct: 1692 YSPTSPSYSPTSPSYS 1707
Score = 61.6 bits (148), Expect = 3e-09
Identities = 96/386 (24%), Positives = 133/386 (34%), Gaps = 48/386 (12%)
Query: 31 SATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPS-GSSMMPGVAGGSSALTSPQCL 89
SA P G +S T W G P A SPS GS M PG AG S + S
Sbjct: 1505 SAPSPMGGISPAMTPWNQG--------ATPAYGAWSPSVGSGMTPGAAGFSPSAASDA-- 1554
Query: 90 GQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAA 149
G + GY + G PG+PG ++ Y PGG PS++ ++
Sbjct: 1555 -------SGFSPGYSPAWSPTPGS-PGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 150 AAAVAAAAATATATATATVAALQEKQSQELS----QYGAMGAGQSFNSQFLQHGGPRGPS 205
+ + + T+ + + + S S Y S S P
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666
Query: 206 VPAGMNPTGIGGVMGPSGLSPL--AMNPTRA--AGMTPLYAGQRLPQHGYPGPPQAQPLP 261
+PT SP + +PT + +P Y+ P + P + P
Sbjct: 1667 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSP 1725
Query: 262 RQG-VKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSL 320
+YS P Y+P++ + P+ SPSY P T +
Sbjct: 1726 SYSPTSPSYSPTSPSYS-PTSPNYSPTSPNYTPTSPSYSPTSPSYS----PTSPNYTPTS 1780
Query: 321 SVPGPTGLHYKPTR-----SIPGY-PSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPD 374
PT Y PT + P Y PSSP +P TPSS P SP+ SP P
Sbjct: 1781 PNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSS--PSYSPSSPSYSPTSPK 1838
Query: 375 LKPNLNSLHSSPSGSGPCDELRLTFP 400
P +SPS S E T P
Sbjct: 1839 YTP------TSPSYSPSSPEYTPTSP 1858
Score = 43.1 bits (100), Expect = 0.001
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 15/173 (8%)
Query: 688 PSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPGQGSSF--LGPGTFPESFPPTTPSTPTL 745
PS + P + + P P P Y S+ P P S P TP +PT
Sbjct: 1760 PSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSS-PRYTPQSPT- 1817
Query: 746 AEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPP 805
+TP P SY PS TS K T PS + PT +P TS +P
Sbjct: 1818 --YTPSSP--SYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP---TSPKYSPT 1870
Query: 806 GPQLHHSNP---PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPE 855
P+ ++P P + S + PT + ++P + P S + + +P+
Sbjct: 1871 SPKYSPTSPTYSPTTPKYSPTSPTYSPTSPV-YTPTSPKYSPTSPTYSPTSPK 1922
Score = 40.8 bits (94), Expect = 0.006
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 284 YAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGY-PSS 342
Y+PS+ ++P+ + SPSY P T + PT Y PT P Y P+S
Sbjct: 1825 YSPSSPSYSPTSPKYTPTSPSYS----PSSPEYTPTSPKYSPTSPKYSPTS--PKYSPTS 1878
Query: 343 PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKP 377
P TP +P+S P SP V +P P P
Sbjct: 1879 PTYSPTTPKYSPTS--PTYSPTSPVYTPTSPKYSP 1911
Score = 38.1 bits (87), Expect = 0.037
Identities = 46/186 (24%), Positives = 70/186 (37%), Gaps = 20/186 (10%)
Query: 688 PSVMEMIAALGPGAAPF------APLQP----PSVPAPSDYPGQGSSFLGPGTFPESFPP 737
PS + PG +P +P P P +P+P S P P S
Sbjct: 1548 PSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGG 1607
Query: 738 TTPSTPTLAEFTP--GPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPT---HNPG 792
TP +P+ + +P P SY P+ TS + PS + PT ++P
Sbjct: 1608 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1667
Query: 793 TPGLH-TSNLGAPPGPQLHHSNP---PPASRQSLGQASLGPTGELAFSPATGVMGPPSMS 848
+P TS +P P ++P P + S S PT ++SP + P S S
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPS 1726
Query: 849 GAGEAP 854
+ +P
Sbjct: 1727 YSPTSP 1732
Score = 37.7 bits (86), Expect = 0.048
Identities = 86/393 (21%), Positives = 125/393 (31%), Gaps = 44/393 (11%)
Query: 14 APHGDGSFAYESVPWQQSATQPAGSLS------VVTTVWGVGNATQSQVLGNPMG--PAG 65
AP G + PW Q AT G+ S + G + S G G PA
Sbjct: 1506 APSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAW 1565
Query: 66 SPS---------GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPG 116
SP+ S +P G S SP + + GG S P
Sbjct: 1566 SPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPT 1625
Query: 117 APGFTT---GYAGGPGGLGLPSHAARP-STDFTQAAAAAAVAAAAATATATATATVAALQ 172
+P ++ Y+ S + P S ++ + + + + + + T+ + + +
Sbjct: 1626 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685
Query: 173 EKQSQELS----QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLA 228
S S Y S S P +PT SP +
Sbjct: 1686 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1745
Query: 229 MN--PTRAAGMTPLYAGQRLPQHGY-PGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYA 285
N PT + TP Y P P P YS P Y+
Sbjct: 1746 PNYSPT-SPNYTPTSPSYSPTSPSYSPTSPNYTP-----TSPNYSPTSPSYSPTSPS-YS 1798
Query: 286 PSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGY-PSSPL 344
P++ ++PS + SP+Y P + S PT Y PT P Y PSSP
Sbjct: 1799 PTSPSYSPSSPRYTPQSPTY----TPSSPSYSPSSPSYSPTSPKYTPTS--PSYSPSSPE 1852
Query: 345 PGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKP 377
+P +P+S P SP SP P P
Sbjct: 1853 YTPTSPKYSPTS--PKYSPTSPKYSPTSPTYSP 1883
Score = 32.0 bits (71), Expect = 2.6
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPS-TPTLAEFTPGPPPISY 757
P + ++P P P Y ++ P T + PT+P+ +PT +TP P Y
Sbjct: 1855 PTSPKYSPTSPKYSPTSPKYSPTSPTY-SPTT--PKYSPTSPTYSPTSPVYTPTSP--KY 1909
Query: 758 QSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPG 795
P+ TS K + P+ +P T++P +PG
Sbjct: 1910 SPTSPTYSPTSPKYSPTSPT-YSPTSPKGSTYSPTSPG 1946
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 64.7 bits (156), Expect = 4e-10
Identities = 100/374 (26%), Positives = 126/374 (33%), Gaps = 57/374 (15%)
Query: 4 MNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGP 63
+ PM P PP P G A P G V +V GVG + GNP P
Sbjct: 1227 VGPMGPPGPPGPRGPQG--------PNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1278
Query: 64 ----AGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G P G G AG A P G N G V G G PG PG
Sbjct: 1279 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPG 1336
Query: 120 --FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G G G G P P + A A + +Q +
Sbjct: 1337 PAGQDGVGGDKGEDGDPGQPGPP--------GPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1388
Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGM-NPTGIGGVMGPSGLSPLAMNPTRAAG 236
+ ++ A G + GP GP PAG P G+ G+ GP G L
Sbjct: 1389 KGAKGEAGAEGPPGKT------GPVGPQGPAGKPGPEGLRGIPGPVGEQGL--------- 1433
Query: 237 MTPLYAGQRLP--QHGYPGPPQAQPLPRQGVKRTYSEVY-----PGQQYLQGGQYAPSTA 289
P AGQ P G PG P + P ++ + + PG+Q +G + P T
Sbjct: 1434 --PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQ 1491
Query: 290 QFAPSPGQPPAPSPSYP-----GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP- 343
+ G P P+ P LP QG + GP G K +PG P SP
Sbjct: 1492 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAG--QKGDSGLPGPPGSPG 1549
Query: 344 LPGNPTPPMTPSSS 357
PG P+ SS
Sbjct: 1550 PPGEVIQPLPILSS 1563
Score = 51.2 bits (121), Expect = 4e-06
Identities = 92/345 (26%), Positives = 110/345 (31%), Gaps = 81/345 (23%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P K LP P G + Q T P G VV G G+P GP G
Sbjct: 951 PGKDGLPGHPGQRGETGF------QGKTGPPGPGGVVGPQGPTGETGPIGERGHP-GPPG 1003
Query: 66 SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYA 125
P G +PG AG A P G Q + G +G G PGA G G
Sbjct: 1004 PP-GEQGLPGAAGKEGAKGDP---GPQGISGKDGPAGL--RGFPGERGLPGAQG-APGLK 1056
Query: 126 GGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAM 185
GG G G P P +A TA G +
Sbjct: 1057 GGEGPQGPPGPVGSPGE-----------RGSAGTA----------------------GPI 1083
Query: 186 GAGQSFNSQFLQHGGPRGPSVPAG----------MNPTGIGGVMGPSGLSPLAMNPTRAA 235
G GP+GP PAG P G GV GP GL P P +
Sbjct: 1084 GLPG--------RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL-PGPAGPAGSP 1134
Query: 236 GM--------TPLYAGQR--LPQHGYPGPPQAQ-PLPRQGVKRTYSEVYPGQQYLQGGQY 284
G P G + ++G PGPP Q P+ G+ E P Q GQ
Sbjct: 1135 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK 1194
Query: 285 APSTAQFAPSPGQPPAPS--PSYPGHRLPLQQGMTQSLSVPGPTG 327
A+ P P P P PG + + G + PGP G
Sbjct: 1195 GDEGARGFPGPPGPIGLQGLPGPPGEK--GENGDVGPMGPPGPPG 1237
Score = 50.4 bits (119), Expect = 7e-06
Identities = 86/320 (26%), Positives = 107/320 (33%), Gaps = 49/320 (15%)
Query: 57 LGNPMGPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGG-ANKG----------- 102
L P GP G P G PG+ G P + F GG +KG
Sbjct: 470 LQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 529
Query: 103 -YVQQGVYSRGGYPGAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAAT 159
+QQ + G PG G T G GGPG G + P +
Sbjct: 530 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 589
Query: 160 ATATATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAG--------- 209
A + G G G + GP+GP P G
Sbjct: 590 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 649
Query: 210 -MNPTGIGGVMGPSGL-----SPLAMNPTRAAGMT--PLYAGQRLPQHGYPGPPQAQPLP 261
+ P G+ G GP GL +P A AG+ P G PQ G PGPP Q P
Sbjct: 650 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNP 708
Query: 262 -RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGH-RLPLQQGMTQS 319
QG+ + P + +G Q P A G P A P PGH Q G +
Sbjct: 709 GPQGLPGPQGPIGPPGE--KGPQGKPGLA------GLPGADGP--PGHPGKEGQSGEKGA 758
Query: 320 LSVPGPTG-LHYKPTRSIPG 338
L PGP G + Y R + G
Sbjct: 759 LGPPGPQGPIGYPGPRGVKG 778
Score = 48.5 bits (114), Expect = 3e-05
Identities = 87/322 (27%), Positives = 107/322 (33%), Gaps = 67/322 (20%)
Query: 60 PMGPAG--SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
P GP G P+G G AG L P G +QG G+PG
Sbjct: 824 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG-----------RQGPKGSTGFPGF 872
Query: 118 PGFTTGYAGGPGGLGLPSHAAR--PSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
PG G G G G P + P+ A T+ E+
Sbjct: 873 PG-ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 931
Query: 176 SQELSQYGAMG-------AGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPL 227
Q G +G G H G RG + G P G GGV+GP G
Sbjct: 932 PQ--GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG---- 985
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP----RQGVKRTYS------------- 270
PT G P+ G+R G PGPP Q LP ++G K
Sbjct: 986 ---PTGETG--PI--GER-GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGL 1037
Query: 271 EVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHY 330
+PG++ L G Q AP + P PP P S PG R S GP GL
Sbjct: 1038 RGFPGERGLPGAQGAPG-LKGGEGPQGPPGPVGS-PGER--------GSAGTAGPIGLPG 1087
Query: 331 KPTRSIPGYPSSP--LPGNPTP 350
+P P P+ PG P
Sbjct: 1088 RPGPQGPPGPAGEKGAPGEKGP 1109
Score = 43.1 bits (100), Expect = 0.001
Identities = 89/345 (25%), Positives = 113/345 (32%), Gaps = 79/345 (22%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEG----GANKGYVQQGVYSRGGYP 115
P GP G P G PG GG P G + F +G +KG+ +G G P
Sbjct: 581 PPGPTGKP-GKRGRPGADGGRGMPGEPGAKGDRGF-DGLPGLPGDKGH--RGERGPQGPP 636
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G PG G G G GLP A + T A +A +
Sbjct: 637 GPPGDDGMRGEDGEIGPRGLPGEAG-----------PRGLLGPRGTPGAPGQPGMAGVDG 685
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ G MG Q Q G P +P P G G GP G LA P
Sbjct: 686 PPGPK----GNMGP-QGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLP-- 738
Query: 234 AAGMTPLYAGQ--RLPQHGYPGPPQAQ-----PLPR--------QGVKRTYSEV------ 272
A P + G+ + + G GPP Q P PR +G+K + E
Sbjct: 739 GADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 798
Query: 273 -YPGQQYLQG-----------GQYAPSTAQFAPSPGQPPAPS--------------PSYP 306
+ G L+G G+ P + P P PS P YP
Sbjct: 799 GFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 858
Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPP 351
G + P +G T PG G K R + G P PT P
Sbjct: 859 GRQGP--KGSTGFPGFPGANG--EKGARGVAGKPGPRGQRGPTGP 899
Score = 38.9 bits (89), Expect = 0.022
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 775 LPSQMAPAGHLDPTHNPGTPGL-HTSNLGAPPGPQLH---HSNP-PPASRQSLGQASL-G 828
LP + P G L P PG PG + + PPGP+ + P PP + + G L G
Sbjct: 656 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 715
Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEP 856
P G + G G P ++G A P
Sbjct: 716 PQGPIGPPGEKGPQGKPGLAGLPGADGP 743
Score = 37.7 bits (86), Expect = 0.048
Identities = 54/214 (25%), Positives = 61/214 (28%), Gaps = 47/214 (21%)
Query: 698 GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP---- 753
GP P P PP P P+ G G G + PP P+ PGPP
Sbjct: 1321 GPVGFPGDP-GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG----PSGEAGPPGPPGKRG 1375
Query: 754 ---PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH------------- 797
+ E P + P G P PG GL
Sbjct: 1376 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1435
Query: 798 TSNLGAPPGPQLHHSNP----PPASRQSLGQASL-------GPTGELAFSPATGVMGPPS 846
+ PPGP P P S+ G L G GE G G P
Sbjct: 1436 AAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPG 1495
Query: 847 MSGAGEAPEPALDLLPELTNPDELLSYLGPPDLP 880
G G P PA L P GPP LP
Sbjct: 1496 AKGDGGIPGPAGPLGPP-----------GPPGLP 1518
Score = 35.4 bits (80), Expect = 0.24
Identities = 44/175 (25%), Positives = 60/175 (34%), Gaps = 47/175 (26%)
Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE 769
P VPA +D +S G G + E P+ GPP + + I
Sbjct: 415 PGVPAETDITE--TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI-------- 464
Query: 770 KSTACLPSQMAPAGHLDPTHNPGTPGLH----------TSNLGAPPGPQL---------H 810
M P G PT PG PG L PPG L
Sbjct: 465 ---------MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG 515
Query: 811 HSNPPPASRQSLGQASL--------GPTGELAFSPATGVMGPPSMSGA-GEAPEP 856
P +++++ QA L GP G + + G +G P SGA GE+ +P
Sbjct: 516 SKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 570
Score = 35.4 bits (80), Expect = 0.24
Identities = 48/165 (29%), Positives = 54/165 (32%), Gaps = 48/165 (29%)
Query: 699 PGAA----PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPGP 752
PGAA P P+ PP +P PG PG PP T G
Sbjct: 1434 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1493
Query: 753 PPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHS 812
P IP PAG L P PG PGL PGPQ
Sbjct: 1494 PGAKGDGGIPG-----------------PAGPLGP---PGPPGL--------PGPQGPKG 1525
Query: 813 NPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEP 856
N + S GP G+ S G+ GPP G GE +P
Sbjct: 1526 N----------KGSTGPAGQKGDS---GLPGPPGSPGPPGEVIQP 1557
Score = 35.0 bits (79), Expect = 0.31
Identities = 76/305 (24%), Positives = 92/305 (30%), Gaps = 40/305 (13%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQA----FAEGGANKGYVQQGVYSRGGYP 115
P GP G P GS G AG + + P G Q E GA QG R G
Sbjct: 1061 PQGPPG-PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1119
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G G G AG PG G P ++ A A +
Sbjct: 1120 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGD 1179
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ Q G G Q G P P G+ G+ GP G
Sbjct: 1180 GEPGPRGQQGMFG----------QKGDEGARGFPGPPGPIGLQGLPGPPG------EKGE 1223
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYS-EVYPGQQYLQGGQYAPSTAQFA 292
+ P+ G PGPP P QG + PG GG A
Sbjct: 1224 NGDVGPM---------GPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEA 1272
Query: 293 PSPGQPPAPSPSYP-GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPL--PGNPT 349
+PG P P G R ++G GP G P P P+ PG+P
Sbjct: 1273 GNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG 1330
Query: 350 PPMTP 354
PP P
Sbjct: 1331 PPGEP 1335
Score = 34.3 bits (77), Expect = 0.53
Identities = 45/172 (26%), Positives = 54/172 (31%), Gaps = 31/172 (18%)
Query: 694 IAALGPGA--APFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPG 751
+ +GP P P P P PG S G G E P P E G
Sbjct: 1227 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP--GEAGVG 1284
Query: 752 PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP--PGPQL 809
P EK A P P G P + G G + +G P PGP
Sbjct: 1285 GPKGE----------RGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPP- 1332
Query: 810 HHSNPPPASRQSLG-----------QASLGPTGELAFSPATGVMGPPSMSGA 850
P PA + +G GP+GE G GPP +GA
Sbjct: 1333 --GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1382
Score = 32.3 bits (72), Expect = 2.0
Identities = 41/148 (27%), Positives = 52/148 (35%), Gaps = 25/148 (16%)
Query: 706 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSS 764
P PP + P PG PG + F PGPP PI Q +P
Sbjct: 1160 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGF-PGPPGPIGLQG-LPGP 1217
Query: 765 LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLG 823
P + G + P PG PG P GPQ + ++ P S+G
Sbjct: 1218 -----------PGEKGENGDVGPMGPPGPPG--------PRGPQGPNGADGPQGPPGSVG 1258
Query: 824 QASLGPTGELAFSPATGVMGPPSMSGAG 851
S+G GE G GPP +G G
Sbjct: 1259 --SVGGVGEKGEPGEAGNPGPPGEAGVG 1284
Score = 32.0 bits (71), Expect = 2.6
Identities = 56/217 (25%), Positives = 74/217 (34%), Gaps = 48/217 (22%)
Query: 179 LSQYGAMGA-GQSFNSQFLQHG----GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
++ +GA G GQ ++ G GP GP+ PAG +MGP GL PT
Sbjct: 428 INGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAG--------IMGPPGL----QGPTG 475
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
G G R P G PG P A LP PG + +Y +
Sbjct: 476 PPG----DPGDRGPP-GRPGLPGADGLPGP----------PGTMLMLPFRYGGDGS---- 516
Query: 294 SPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMT 353
+ P S + LQQ PGP GL +P P+ G +
Sbjct: 517 ---KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP---------GPVGGPGSSGAK 564
Query: 354 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSG 390
S P + V+ P P KP + G G
Sbjct: 565 GESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRG 601
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 64.7 bits (156), Expect = 4e-10
Identities = 100/374 (26%), Positives = 126/374 (33%), Gaps = 57/374 (15%)
Query: 4 MNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGP 63
+ PM P PP P G A P G V +V GVG + GNP P
Sbjct: 1176 VGPMGPPGPPGPRGPQG--------PNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1227
Query: 64 ----AGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G P G G AG A P G N G V G G PG PG
Sbjct: 1228 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPG 1285
Query: 120 --FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G G G G P P + A A + +Q +
Sbjct: 1286 PAGQDGVGGDKGEDGDPGQPGPP--------GPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1337
Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGM-NPTGIGGVMGPSGLSPLAMNPTRAAG 236
+ ++ A G + GP GP PAG P G+ G+ GP G L
Sbjct: 1338 KGAKGEAGAEGPPGKT------GPVGPQGPAGKPGPEGLRGIPGPVGEQGL--------- 1382
Query: 237 MTPLYAGQRLP--QHGYPGPPQAQPLPRQGVKRTYSEVY-----PGQQYLQGGQYAPSTA 289
P AGQ P G PG P + P ++ + + PG+Q +G + P T
Sbjct: 1383 --PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQ 1440
Query: 290 QFAPSPGQPPAPSPSYP-----GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP- 343
+ G P P+ P LP QG + GP G K +PG P SP
Sbjct: 1441 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAG--QKGDSGLPGPPGSPG 1498
Query: 344 LPGNPTPPMTPSSS 357
PG P+ SS
Sbjct: 1499 PPGEVIQPLPILSS 1512
Score = 51.2 bits (121), Expect = 4e-06
Identities = 92/345 (26%), Positives = 110/345 (31%), Gaps = 81/345 (23%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P K LP P G + Q T P G VV G G+P GP G
Sbjct: 900 PGKDGLPGHPGQRGETGF------QGKTGPPGPGGVVGPQGPTGETGPIGERGHP-GPPG 952
Query: 66 SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYA 125
P G +PG AG A P G Q + G +G G PGA G G
Sbjct: 953 PP-GEQGLPGAAGKEGAKGDP---GPQGISGKDGPAGL--RGFPGERGLPGAQG-APGLK 1005
Query: 126 GGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAM 185
GG G G P P +A TA G +
Sbjct: 1006 GGEGPQGPPGPVGSPGE-----------RGSAGTA----------------------GPI 1032
Query: 186 GAGQSFNSQFLQHGGPRGPSVPAG----------MNPTGIGGVMGPSGLSPLAMNPTRAA 235
G GP+GP PAG P G GV GP GL P P +
Sbjct: 1033 GLPG--------RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL-PGPAGPAGSP 1083
Query: 236 GM--------TPLYAGQR--LPQHGYPGPPQAQ-PLPRQGVKRTYSEVYPGQQYLQGGQY 284
G P G + ++G PGPP Q P+ G+ E P Q GQ
Sbjct: 1084 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK 1143
Query: 285 APSTAQFAPSPGQPPAPS--PSYPGHRLPLQQGMTQSLSVPGPTG 327
A+ P P P P PG + + G + PGP G
Sbjct: 1144 GDEGARGFPGPPGPIGLQGLPGPPGEK--GENGDVGPMGPPGPPG 1186
Score = 50.4 bits (119), Expect = 7e-06
Identities = 86/320 (26%), Positives = 107/320 (33%), Gaps = 49/320 (15%)
Query: 57 LGNPMGPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGG-ANKG----------- 102
L P GP G P G PG+ G P + F GG +KG
Sbjct: 419 LQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 478
Query: 103 -YVQQGVYSRGGYPGAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAAT 159
+QQ + G PG G T G GGPG G + P +
Sbjct: 479 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 538
Query: 160 ATATATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAG--------- 209
A + G G G + GP+GP P G
Sbjct: 539 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 598
Query: 210 -MNPTGIGGVMGPSGL-----SPLAMNPTRAAGMT--PLYAGQRLPQHGYPGPPQAQPLP 261
+ P G+ G GP GL +P A AG+ P G PQ G PGPP Q P
Sbjct: 599 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNP 657
Query: 262 -RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGH-RLPLQQGMTQS 319
QG+ + P + +G Q P A G P A P PGH Q G +
Sbjct: 658 GPQGLPGPQGPIGPPGE--KGPQGKPGLA------GLPGADGP--PGHPGKEGQSGEKGA 707
Query: 320 LSVPGPTG-LHYKPTRSIPG 338
L PGP G + Y R + G
Sbjct: 708 LGPPGPQGPIGYPGPRGVKG 727
Score = 48.5 bits (114), Expect = 3e-05
Identities = 87/322 (27%), Positives = 107/322 (33%), Gaps = 67/322 (20%)
Query: 60 PMGPAG--SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
P GP G P+G G AG L P G +QG G+PG
Sbjct: 773 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG-----------RQGPKGSTGFPGF 821
Query: 118 PGFTTGYAGGPGGLGLPSHAAR--PSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
PG G G G G P + P+ A T+ E+
Sbjct: 822 PG-ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 880
Query: 176 SQELSQYGAMG-------AGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPL 227
Q G +G G H G RG + G P G GGV+GP G
Sbjct: 881 PQ--GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG---- 934
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP----RQGVKRTYS------------- 270
PT G P+ G+R G PGPP Q LP ++G K
Sbjct: 935 ---PTGETG--PI--GER-GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGL 986
Query: 271 EVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHY 330
+PG++ L G Q AP + P PP P S PG R S GP GL
Sbjct: 987 RGFPGERGLPGAQGAPG-LKGGEGPQGPPGPVGS-PGER--------GSAGTAGPIGLPG 1036
Query: 331 KPTRSIPGYPSSP--LPGNPTP 350
+P P P+ PG P
Sbjct: 1037 RPGPQGPPGPAGEKGAPGEKGP 1058
Score = 43.1 bits (100), Expect = 0.001
Identities = 89/345 (25%), Positives = 113/345 (32%), Gaps = 79/345 (22%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEG----GANKGYVQQGVYSRGGYP 115
P GP G P G PG GG P G + F +G +KG+ +G G P
Sbjct: 530 PPGPTGKP-GKRGRPGADGGRGMPGEPGAKGDRGF-DGLPGLPGDKGH--RGERGPQGPP 585
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G PG G G G GLP A + T A +A +
Sbjct: 586 GPPGDDGMRGEDGEIGPRGLPGEAG-----------PRGLLGPRGTPGAPGQPGMAGVDG 634
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ G MG Q Q G P +P P G G GP G LA P
Sbjct: 635 PPGPK----GNMGP-QGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLP-- 687
Query: 234 AAGMTPLYAGQ--RLPQHGYPGPPQAQ-----PLPR--------QGVKRTYSEV------ 272
A P + G+ + + G GPP Q P PR +G+K + E
Sbjct: 688 GADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 747
Query: 273 -YPGQQYLQG-----------GQYAPSTAQFAPSPGQPPAPS--------------PSYP 306
+ G L+G G+ P + P P PS P YP
Sbjct: 748 GFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 807
Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPP 351
G + P +G T PG G K R + G P PT P
Sbjct: 808 GRQGP--KGSTGFPGFPGANG--EKGARGVAGKPGPRGQRGPTGP 848
Score = 38.9 bits (89), Expect = 0.022
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 775 LPSQMAPAGHLDPTHNPGTPGL-HTSNLGAPPGPQLH---HSNP-PPASRQSLGQASL-G 828
LP + P G L P PG PG + + PPGP+ + P PP + + G L G
Sbjct: 605 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 664
Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEP 856
P G + G G P ++G A P
Sbjct: 665 PQGPIGPPGEKGPQGKPGLAGLPGADGP 692
Score = 37.7 bits (86), Expect = 0.048
Identities = 54/214 (25%), Positives = 61/214 (28%), Gaps = 47/214 (21%)
Query: 698 GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP---- 753
GP P P PP P P+ G G G + PP P+ PGPP
Sbjct: 1270 GPVGFPGDP-GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG----PSGEAGPPGPPGKRG 1324
Query: 754 ---PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH------------- 797
+ E P + P G P PG GL
Sbjct: 1325 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1384
Query: 798 TSNLGAPPGPQLHHSNP----PPASRQSLGQASL-------GPTGELAFSPATGVMGPPS 846
+ PPGP P P S+ G L G GE G G P
Sbjct: 1385 AAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPG 1444
Query: 847 MSGAGEAPEPALDLLPELTNPDELLSYLGPPDLP 880
G G P PA L P GPP LP
Sbjct: 1445 AKGDGGIPGPAGPLGPP-----------GPPGLP 1467
Score = 35.4 bits (80), Expect = 0.24
Identities = 44/175 (25%), Positives = 60/175 (34%), Gaps = 47/175 (26%)
Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE 769
P VPA +D +S G G + E P+ GPP + + I
Sbjct: 364 PGVPAETDITE--TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI-------- 413
Query: 770 KSTACLPSQMAPAGHLDPTHNPGTPGLH----------TSNLGAPPGPQL---------H 810
M P G PT PG PG L PPG L
Sbjct: 414 ---------MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG 464
Query: 811 HSNPPPASRQSLGQASL--------GPTGELAFSPATGVMGPPSMSGA-GEAPEP 856
P +++++ QA L GP G + + G +G P SGA GE+ +P
Sbjct: 465 SKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 519
Score = 35.4 bits (80), Expect = 0.24
Identities = 48/165 (29%), Positives = 54/165 (32%), Gaps = 48/165 (29%)
Query: 699 PGAA----PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPGP 752
PGAA P P+ PP +P PG PG PP T G
Sbjct: 1383 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1442
Query: 753 PPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHS 812
P IP PAG L P PG PGL PGPQ
Sbjct: 1443 PGAKGDGGIPG-----------------PAGPLGP---PGPPGL--------PGPQGPKG 1474
Query: 813 NPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEP 856
N + S GP G+ S G+ GPP G GE +P
Sbjct: 1475 N----------KGSTGPAGQKGDS---GLPGPPGSPGPPGEVIQP 1506
Score = 35.0 bits (79), Expect = 0.31
Identities = 76/305 (24%), Positives = 92/305 (30%), Gaps = 40/305 (13%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQA----FAEGGANKGYVQQGVYSRGGYP 115
P GP G P GS G AG + + P G Q E GA QG R G
Sbjct: 1010 PQGPPG-PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1068
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G G G AG PG G P ++ A A +
Sbjct: 1069 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGD 1128
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ Q G G Q G P P G+ G+ GP G
Sbjct: 1129 GEPGPRGQQGMFG----------QKGDEGARGFPGPPGPIGLQGLPGPPG------EKGE 1172
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYS-EVYPGQQYLQGGQYAPSTAQFA 292
+ P+ G PGPP P QG + PG GG A
Sbjct: 1173 NGDVGPM---------GPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEA 1221
Query: 293 PSPGQPPAPSPSYP-GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPL--PGNPT 349
+PG P P G R ++G GP G P P P+ PG+P
Sbjct: 1222 GNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG 1279
Query: 350 PPMTP 354
PP P
Sbjct: 1280 PPGEP 1284
Score = 34.3 bits (77), Expect = 0.53
Identities = 45/172 (26%), Positives = 54/172 (31%), Gaps = 31/172 (18%)
Query: 694 IAALGPGA--APFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPG 751
+ +GP P P P P PG S G G E P P E G
Sbjct: 1176 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP--GEAGVG 1233
Query: 752 PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP--PGPQL 809
P EK A P P G P + G G + +G P PGP
Sbjct: 1234 GPKGE----------RGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPP- 1281
Query: 810 HHSNPPPASRQSLG-----------QASLGPTGELAFSPATGVMGPPSMSGA 850
P PA + +G GP+GE G GPP +GA
Sbjct: 1282 --GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1331
Score = 32.3 bits (72), Expect = 2.0
Identities = 41/148 (27%), Positives = 52/148 (35%), Gaps = 25/148 (16%)
Query: 706 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSS 764
P PP + P PG PG + F PGPP PI Q +P
Sbjct: 1109 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGF-PGPPGPIGLQG-LPGP 1166
Query: 765 LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLG 823
P + G + P PG PG P GPQ + ++ P S+G
Sbjct: 1167 -----------PGEKGENGDVGPMGPPGPPG--------PRGPQGPNGADGPQGPPGSVG 1207
Query: 824 QASLGPTGELAFSPATGVMGPPSMSGAG 851
S+G GE G GPP +G G
Sbjct: 1208 --SVGGVGEKGEPGEAGNPGPPGEAGVG 1233
Score = 32.0 bits (71), Expect = 2.6
Identities = 56/217 (25%), Positives = 74/217 (34%), Gaps = 48/217 (22%)
Query: 179 LSQYGAMGA-GQSFNSQFLQHG----GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
++ +GA G GQ ++ G GP GP+ PAG +MGP GL PT
Sbjct: 377 INGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAG--------IMGPPGL----QGPTG 424
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
G G R P G PG P A LP PG + +Y +
Sbjct: 425 PPG----DPGDRGPP-GRPGLPGADGLPGP----------PGTMLMLPFRYGGDGS---- 465
Query: 294 SPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMT 353
+ P S + LQQ PGP GL +P P+ G +
Sbjct: 466 ---KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP---------GPVGGPGSSGAK 513
Query: 354 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSG 390
S P + V+ P P KP + G G
Sbjct: 514 GESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRG 550
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 64.7 bits (156), Expect = 4e-10
Identities = 100/374 (26%), Positives = 126/374 (33%), Gaps = 57/374 (15%)
Query: 4 MNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGP 63
+ PM P PP P G A P G V +V GVG + GNP P
Sbjct: 1215 VGPMGPPGPPGPRGPQG--------PNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1266
Query: 64 ----AGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G P G G AG A P G N G V G G PG PG
Sbjct: 1267 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPG 1324
Query: 120 --FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G G G G P P + A A + +Q +
Sbjct: 1325 PAGQDGVGGDKGEDGDPGQPGPP--------GPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1376
Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGM-NPTGIGGVMGPSGLSPLAMNPTRAAG 236
+ ++ A G + GP GP PAG P G+ G+ GP G L
Sbjct: 1377 KGAKGEAGAEGPPGKT------GPVGPQGPAGKPGPEGLRGIPGPVGEQGL--------- 1421
Query: 237 MTPLYAGQRLP--QHGYPGPPQAQPLPRQGVKRTYSEVY-----PGQQYLQGGQYAPSTA 289
P AGQ P G PG P + P ++ + + PG+Q +G + P T
Sbjct: 1422 --PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQ 1479
Query: 290 QFAPSPGQPPAPSPSYP-----GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP- 343
+ G P P+ P LP QG + GP G K +PG P SP
Sbjct: 1480 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAG--QKGDSGLPGPPGSPG 1537
Query: 344 LPGNPTPPMTPSSS 357
PG P+ SS
Sbjct: 1538 PPGEVIQPLPILSS 1551
Score = 51.2 bits (121), Expect = 4e-06
Identities = 92/345 (26%), Positives = 110/345 (31%), Gaps = 81/345 (23%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P K LP P G + Q T P G VV G G+P GP G
Sbjct: 939 PGKDGLPGHPGQRGETGF------QGKTGPPGPGGVVGPQGPTGETGPIGERGHP-GPPG 991
Query: 66 SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYA 125
P G +PG AG A P G Q + G +G G PGA G G
Sbjct: 992 PP-GEQGLPGAAGKEGAKGDP---GPQGISGKDGPAGL--RGFPGERGLPGAQG-APGLK 1044
Query: 126 GGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAM 185
GG G G P P +A TA G +
Sbjct: 1045 GGEGPQGPPGPVGSPGE-----------RGSAGTA----------------------GPI 1071
Query: 186 GAGQSFNSQFLQHGGPRGPSVPAG----------MNPTGIGGVMGPSGLSPLAMNPTRAA 235
G GP+GP PAG P G GV GP GL P P +
Sbjct: 1072 GLPG--------RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL-PGPAGPAGSP 1122
Query: 236 GM--------TPLYAGQR--LPQHGYPGPPQAQ-PLPRQGVKRTYSEVYPGQQYLQGGQY 284
G P G + ++G PGPP Q P+ G+ E P Q GQ
Sbjct: 1123 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK 1182
Query: 285 APSTAQFAPSPGQPPAPS--PSYPGHRLPLQQGMTQSLSVPGPTG 327
A+ P P P P PG + + G + PGP G
Sbjct: 1183 GDEGARGFPGPPGPIGLQGLPGPPGEK--GENGDVGPMGPPGPPG 1225
Score = 50.4 bits (119), Expect = 7e-06
Identities = 86/320 (26%), Positives = 107/320 (33%), Gaps = 49/320 (15%)
Query: 57 LGNPMGPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGG-ANKG----------- 102
L P GP G P G PG+ G P + F GG +KG
Sbjct: 458 LQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 517
Query: 103 -YVQQGVYSRGGYPGAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAAT 159
+QQ + G PG G T G GGPG G + P +
Sbjct: 518 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 577
Query: 160 ATATATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAG--------- 209
A + G G G + GP+GP P G
Sbjct: 578 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 637
Query: 210 -MNPTGIGGVMGPSGL-----SPLAMNPTRAAGMT--PLYAGQRLPQHGYPGPPQAQPLP 261
+ P G+ G GP GL +P A AG+ P G PQ G PGPP Q P
Sbjct: 638 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNP 696
Query: 262 -RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGH-RLPLQQGMTQS 319
QG+ + P + +G Q P A G P A P PGH Q G +
Sbjct: 697 GPQGLPGPQGPIGPPGE--KGPQGKPGLA------GLPGADGP--PGHPGKEGQSGEKGA 746
Query: 320 LSVPGPTG-LHYKPTRSIPG 338
L PGP G + Y R + G
Sbjct: 747 LGPPGPQGPIGYPGPRGVKG 766
Score = 48.5 bits (114), Expect = 3e-05
Identities = 87/322 (27%), Positives = 107/322 (33%), Gaps = 67/322 (20%)
Query: 60 PMGPAG--SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
P GP G P+G G AG L P G +QG G+PG
Sbjct: 812 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG-----------RQGPKGSTGFPGF 860
Query: 118 PGFTTGYAGGPGGLGLPSHAAR--PSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
PG G G G G P + P+ A T+ E+
Sbjct: 861 PG-ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 919
Query: 176 SQELSQYGAMG-------AGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPL 227
Q G +G G H G RG + G P G GGV+GP G
Sbjct: 920 PQ--GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG---- 973
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP----RQGVKRTYS------------- 270
PT G P+ G+R G PGPP Q LP ++G K
Sbjct: 974 ---PTGETG--PI--GER-GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGL 1025
Query: 271 EVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHY 330
+PG++ L G Q AP + P PP P S PG R S GP GL
Sbjct: 1026 RGFPGERGLPGAQGAPG-LKGGEGPQGPPGPVGS-PGER--------GSAGTAGPIGLPG 1075
Query: 331 KPTRSIPGYPSSP--LPGNPTP 350
+P P P+ PG P
Sbjct: 1076 RPGPQGPPGPAGEKGAPGEKGP 1097
Score = 43.1 bits (100), Expect = 0.001
Identities = 89/345 (25%), Positives = 113/345 (32%), Gaps = 79/345 (22%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEG----GANKGYVQQGVYSRGGYP 115
P GP G P G PG GG P G + F +G +KG+ +G G P
Sbjct: 569 PPGPTGKP-GKRGRPGADGGRGMPGEPGAKGDRGF-DGLPGLPGDKGH--RGERGPQGPP 624
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G PG G G G GLP A + T A +A +
Sbjct: 625 GPPGDDGMRGEDGEIGPRGLPGEAG-----------PRGLLGPRGTPGAPGQPGMAGVDG 673
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ G MG Q Q G P +P P G G GP G LA P
Sbjct: 674 PPGPK----GNMGP-QGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLP-- 726
Query: 234 AAGMTPLYAGQ--RLPQHGYPGPPQAQ-----PLPR--------QGVKRTYSEV------ 272
A P + G+ + + G GPP Q P PR +G+K + E
Sbjct: 727 GADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 786
Query: 273 -YPGQQYLQG-----------GQYAPSTAQFAPSPGQPPAPS--------------PSYP 306
+ G L+G G+ P + P P PS P YP
Sbjct: 787 GFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 846
Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPP 351
G + P +G T PG G K R + G P PT P
Sbjct: 847 GRQGP--KGSTGFPGFPGANG--EKGARGVAGKPGPRGQRGPTGP 887
Score = 38.9 bits (89), Expect = 0.022
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 775 LPSQMAPAGHLDPTHNPGTPGL-HTSNLGAPPGPQLH---HSNP-PPASRQSLGQASL-G 828
LP + P G L P PG PG + + PPGP+ + P PP + + G L G
Sbjct: 644 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 703
Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEP 856
P G + G G P ++G A P
Sbjct: 704 PQGPIGPPGEKGPQGKPGLAGLPGADGP 731
Score = 37.7 bits (86), Expect = 0.048
Identities = 54/214 (25%), Positives = 61/214 (28%), Gaps = 47/214 (21%)
Query: 698 GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP---- 753
GP P P PP P P+ G G G + PP P+ PGPP
Sbjct: 1309 GPVGFPGDP-GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG----PSGEAGPPGPPGKRG 1363
Query: 754 ---PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH------------- 797
+ E P + P G P PG GL
Sbjct: 1364 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1423
Query: 798 TSNLGAPPGPQLHHSNP----PPASRQSLGQASL-------GPTGELAFSPATGVMGPPS 846
+ PPGP P P S+ G L G GE G G P
Sbjct: 1424 AAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPG 1483
Query: 847 MSGAGEAPEPALDLLPELTNPDELLSYLGPPDLP 880
G G P PA L P GPP LP
Sbjct: 1484 AKGDGGIPGPAGPLGPP-----------GPPGLP 1506
Score = 35.4 bits (80), Expect = 0.24
Identities = 44/175 (25%), Positives = 60/175 (34%), Gaps = 47/175 (26%)
Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE 769
P VPA +D +S G G + E P+ GPP + + I
Sbjct: 403 PGVPAETDITE--TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI-------- 452
Query: 770 KSTACLPSQMAPAGHLDPTHNPGTPGLH----------TSNLGAPPGPQL---------H 810
M P G PT PG PG L PPG L
Sbjct: 453 ---------MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG 503
Query: 811 HSNPPPASRQSLGQASL--------GPTGELAFSPATGVMGPPSMSGA-GEAPEP 856
P +++++ QA L GP G + + G +G P SGA GE+ +P
Sbjct: 504 SKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 558
Score = 35.4 bits (80), Expect = 0.24
Identities = 48/165 (29%), Positives = 54/165 (32%), Gaps = 48/165 (29%)
Query: 699 PGAA----PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPGP 752
PGAA P P+ PP +P PG PG PP T G
Sbjct: 1422 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1481
Query: 753 PPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHS 812
P IP PAG L P PG PGL PGPQ
Sbjct: 1482 PGAKGDGGIPG-----------------PAGPLGP---PGPPGL--------PGPQGPKG 1513
Query: 813 NPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEP 856
N + S GP G+ S G+ GPP G GE +P
Sbjct: 1514 N----------KGSTGPAGQKGDS---GLPGPPGSPGPPGEVIQP 1545
Score = 35.0 bits (79), Expect = 0.31
Identities = 76/305 (24%), Positives = 92/305 (30%), Gaps = 40/305 (13%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQA----FAEGGANKGYVQQGVYSRGGYP 115
P GP G P GS G AG + + P G Q E GA QG R G
Sbjct: 1049 PQGPPG-PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1107
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G G G AG PG G P ++ A A +
Sbjct: 1108 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGD 1167
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ Q G G Q G P P G+ G+ GP G
Sbjct: 1168 GEPGPRGQQGMFG----------QKGDEGARGFPGPPGPIGLQGLPGPPG------EKGE 1211
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYS-EVYPGQQYLQGGQYAPSTAQFA 292
+ P+ G PGPP P QG + PG GG A
Sbjct: 1212 NGDVGPM---------GPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEA 1260
Query: 293 PSPGQPPAPSPSYP-GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPL--PGNPT 349
+PG P P G R ++G GP G P P P+ PG+P
Sbjct: 1261 GNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG 1318
Query: 350 PPMTP 354
PP P
Sbjct: 1319 PPGEP 1323
Score = 34.3 bits (77), Expect = 0.53
Identities = 45/172 (26%), Positives = 54/172 (31%), Gaps = 31/172 (18%)
Query: 694 IAALGPGA--APFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPG 751
+ +GP P P P P PG S G G E P P E G
Sbjct: 1215 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP--GEAGVG 1272
Query: 752 PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP--PGPQL 809
P EK A P P G P + G G + +G P PGP
Sbjct: 1273 GPKGE----------RGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPP- 1320
Query: 810 HHSNPPPASRQSLG-----------QASLGPTGELAFSPATGVMGPPSMSGA 850
P PA + +G GP+GE G GPP +GA
Sbjct: 1321 --GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1370
Score = 32.3 bits (72), Expect = 2.0
Identities = 41/148 (27%), Positives = 52/148 (35%), Gaps = 25/148 (16%)
Query: 706 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSS 764
P PP + P PG PG + F PGPP PI Q +P
Sbjct: 1148 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGF-PGPPGPIGLQG-LPGP 1205
Query: 765 LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLG 823
P + G + P PG PG P GPQ + ++ P S+G
Sbjct: 1206 -----------PGEKGENGDVGPMGPPGPPG--------PRGPQGPNGADGPQGPPGSVG 1246
Query: 824 QASLGPTGELAFSPATGVMGPPSMSGAG 851
S+G GE G GPP +G G
Sbjct: 1247 --SVGGVGEKGEPGEAGNPGPPGEAGVG 1272
Score = 32.0 bits (71), Expect = 2.6
Identities = 56/217 (25%), Positives = 74/217 (34%), Gaps = 48/217 (22%)
Query: 179 LSQYGAMGA-GQSFNSQFLQHG----GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
++ +GA G GQ ++ G GP GP+ PAG +MGP GL PT
Sbjct: 416 INGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAG--------IMGPPGL----QGPTG 463
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
G G R P G PG P A LP PG + +Y +
Sbjct: 464 PPG----DPGDRGPP-GRPGLPGADGLPGP----------PGTMLMLPFRYGGDGS---- 504
Query: 294 SPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMT 353
+ P S + LQQ PGP GL +P P+ G +
Sbjct: 505 ---KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP---------GPVGGPGSSGAK 552
Query: 354 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSG 390
S P + V+ P P KP + G G
Sbjct: 553 GESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRG 589
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 63.2 bits (152), Expect = 1e-09
Identities = 95/361 (26%), Positives = 118/361 (32%), Gaps = 65/361 (18%)
Query: 5 NPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA 64
NP P A +G+ P A P+G Q G P GP
Sbjct: 387 NPGADGQPGAKGANGAPGIAGAPGFPGARGPSGP----------------QGPGGPPGPK 430
Query: 65 GSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGY 124
G+ SG PG G + A P +G Q +G ++G G G PG G
Sbjct: 431 GN-SGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEG--KRGARGEPGPTGLPG-PPGE 486
Query: 125 AGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGA 184
GGPG G P A A + A + + + E GA
Sbjct: 487 RGGPGSRGFPG---------ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 537
Query: 185 MGAGQSFNSQFL-----------QHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
G S S Q G P P P G+ G GP G
Sbjct: 538 KGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKG---------- 587
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQA-QPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFA 292
AAG P AG+R G PGPP A P + G P + G+ P A
Sbjct: 588 AAG-EPGKAGER----GVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGP-----A 637
Query: 293 PSPGQPPAPSPSYPGHRL--PLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTP 350
SPG P P+ P P +QG+ L PGP+G + R PG P P
Sbjct: 638 GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGA--RGERGFPGERGVQGPPGPAG 695
Query: 351 P 351
P
Sbjct: 696 P 696
Score = 57.8 bits (138), Expect = 4e-08
Identities = 97/359 (27%), Positives = 119/359 (33%), Gaps = 67/359 (18%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP--MGPAGS 66
P P AP G P + A+ P G G+ ++ G P GP G
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPG- 248
Query: 67 PSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAG 126
P G+ +PG AG P G + F+ KG G G PG+PG G G
Sbjct: 249 PQGARGLPGTAG------LPGMKGHRGFSGLDGAKG--DAGPAGPKGEPGSPG-ENGAPG 299
Query: 127 GPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA-TATATVAALQEKQSQELSQYGAM 185
G GLP RP A A AA T A GA+
Sbjct: 300 QMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP----------GAV 349
Query: 186 GAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQR 245
GA Q GPRG P G+ G G GP+G + A NP
Sbjct: 350 GAKGEAGPQ-----GPRGSEGPQGVR--GEPGPPGPAGAAGPAGNPGA------------ 390
Query: 246 LPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSY 305
G PG A P G+ +PG + G Q PG PP P +
Sbjct: 391 ---DGQPGAKGANGAP--GIAGAPG--FPGARGPSGPQ----------GPGGPPGPKGNS 433
Query: 306 PGHRLPLQQGMTQSLSVPGPTGLHYKP-------TRSIPGYPS-SPLPGNPTPPMTPSS 356
P +G T + PGP G+ P R G P + LPG P P S
Sbjct: 434 GEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS 492
Score = 52.8 bits (125), Expect = 1e-06
Identities = 98/353 (27%), Positives = 114/353 (32%), Gaps = 48/353 (13%)
Query: 13 PAPHG----DGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPS 68
P P G G VP A PAG G A + G GPAGSP
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGE-QGPAGSPG 641
Query: 69 -----GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYV-QQGVYSRGGYPGAPGFTT 122
G + PG AG P LG + +G+ ++GV P P
Sbjct: 642 FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQG----PPGPAGPR 697
Query: 123 GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQY 182
G G PG G A P +Q A A A L +
Sbjct: 698 GANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGA--------AGLPGPKGDR-GDA 748
Query: 183 GAMGAGQSFNSQFLQH-GGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLY 241
G GA S ++ GP GP PAG G G GPSG + PT A G
Sbjct: 749 GPKGADGSPGKDGVRGLTGPIGPPGPAGA--PGDKGESGPSGPA----GPTGARGAP--- 799
Query: 242 AGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAP 301
G R G PGPP P ++ PG + G A A P P P P
Sbjct: 800 -GDR----GEPGPPG----PAGFAGPPGADGQPGAKGEPGDAGAKGDAG-PPGPAGPAGP 849
Query: 302 SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTP 354
P +G S PG TG R P PS GN PP P
Sbjct: 850 PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS----GNAGPPGPP 898
Score = 46.2 bits (108), Expect = 1e-04
Identities = 103/398 (25%), Positives = 128/398 (32%), Gaps = 61/398 (15%)
Query: 6 PMKPALPPAPHGD-GSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA 64
P P PP P G+ G A G + V G + G P GP
Sbjct: 420 PQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP-GPT 478
Query: 65 G--SPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGAN-KGYV-QQGVYSRGGYPGAP 118
G P G PG G G+ + P+ + + G A KG + G G PGA
Sbjct: 479 GLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAK 538
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G T G G PG G D A A AA + ++ E
Sbjct: 539 GLT-GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGE 597
Query: 179 LSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAG-------MNPTGIGGVMGPSGLSPLAMN 230
G GA G + GP GP+ PAG G G+ GP+G A
Sbjct: 598 RGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGK 657
Query: 231 PTRAAGMTPLYA----GQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAP 286
P L A G R + G+PG Q P R + PG +G AP
Sbjct: 658 PGEQGVPGDLGAPGPSGAR-GERGFPGERGVQGPPGPAGPRGANGA-PGNDGAKGDAGAP 715
Query: 287 ST--AQFAPS----PGQP-----PAP--------------SPSYPGHRLPLQQGMTQSLS 321
+Q AP PG+ P P SP G R G+T +
Sbjct: 716 GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVR-----GLTGPIG 770
Query: 322 VPGPTGLHYKPTRSIPGYPSSPL--------PGNPTPP 351
PGP G S P P+ P G P PP
Sbjct: 771 PPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPP 808
Score = 45.4 bits (106), Expect = 2e-04
Identities = 81/305 (26%), Positives = 98/305 (32%), Gaps = 42/305 (13%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP--MGPAG- 65
P PP P G+ A PAG+ T G A Q V+G P G G
Sbjct: 924 PPGPPGPAGEKG--------SPGADGPAGAPG---TPGPQGIAGQRGVVGLPGQRGERGF 972
Query: 66 ----SPSGSSMMPGVAGGSSALTSPQCLGQQAFA----EGGANKGYVQQGVYSRGGYPGA 117
PSG G +G S P +G A E G +G R G PGA
Sbjct: 973 PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGA 1032
Query: 118 PGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
G TG AG PG G P A A A A +
Sbjct: 1033 KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP 1092
Query: 176 SQELSQYGAMG-AGQSFNSQFLQHGGPRGP-SVPAGMNPTGIGGVMGPSGLS-------- 225
+ + G G G + F GP GP P P+G G GP G
Sbjct: 1093 RGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGK 1152
Query: 226 ------PLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYL 279
P + P G T AG P G PGPP P G ++ P ++
Sbjct: 1153 DGLNGLPGPIGPPGPRGRTG-DAGPVGPP-GPPGPPGPPGPPSAGFDFSFLPQPPQEKAH 1210
Query: 280 QGGQY 284
GG+Y
Sbjct: 1211 DGGRY 1215
Score = 40.0 bits (92), Expect = 0.010
Identities = 50/175 (28%), Positives = 59/175 (33%), Gaps = 23/175 (13%)
Query: 706 PLQPPS-VPAPSDYPGQGSSFLGPGTFPESFPPTT--PSTPTLAEFTPGPPPISYQSDIP 762
P+ PP AP D G S T P P P A F GPP Q
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFA-GPPGADGQPGAK 826
Query: 763 SSLLTS-EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGA----------------PP 805
+ K A P PAG P N G PG + A PP
Sbjct: 827 GEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPP 886
Query: 806 GPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEPALD 859
GP ++ PP + + GP GE + G +GPP G AGE P D
Sbjct: 887 GPS-GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGAD 940
Score = 38.9 bits (89), Expect = 0.022
Identities = 49/186 (26%), Positives = 61/186 (32%), Gaps = 26/186 (13%)
Query: 709 PPSVPAPSDYPGQGSSFLGPGTFPESFPPT------TPSTPTLAEFTPGPP----PISYQ 758
PP P P PG G +F ++ T P P+ PGPP P +Q
Sbjct: 143 PPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQ 202
Query: 759 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH--TSNLGAPPGPQLHHSNPPP 816
P P + +G + P PG PG + G P P P
Sbjct: 203 GP-PGE-----------PGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQ 250
Query: 817 ASRQSLGQASL-GPTGELAFSPATGVMGPPSMSG-AGEAPEPALDLLPELTNPDELLSYL 874
+R G A L G G FS G G +G GE P + P P L
Sbjct: 251 GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGER 310
Query: 875 GPPDLP 880
G P P
Sbjct: 311 GRPGAP 316
Score = 37.7 bits (86), Expect = 0.048
Identities = 47/168 (27%), Positives = 56/168 (33%), Gaps = 56/168 (33%)
Query: 201 PRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPL 260
P G P TG+ G G +G G GP A P
Sbjct: 96 PDGSESPTDQETTGVEGPKGDTG------------------------PRGPRGP--AGPP 129
Query: 261 PRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLP-----LQQG 315
R G+ PGQ L G P P PP P P G+ P +
Sbjct: 130 GRDGI--------PGQPGLPG----------PPGPPGPPGP-PGLGGNFAPQLSYGYDEK 170
Query: 316 MTQSLSVPGPTGLHYKPTRSIPGYPSSPLP----GNPTPPMTPSSSVP 359
T +SVPGP G R +PG P +P P G P P P +S P
Sbjct: 171 STGGISVPGPMG--PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGP 216
Score = 37.7 bits (86), Expect = 0.048
Identities = 52/170 (30%), Positives = 56/170 (32%), Gaps = 55/170 (32%)
Query: 200 GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGY-------- 251
GPRGP PAG P G G+ G GL P P G P G PQ Y
Sbjct: 118 GPRGPRGPAG--PPGRDGIPGQPGL-PGPPGPPGPPG-PPGLGGNFAPQLSYGYDEKSTG 173
Query: 252 ----PGP-----PQAQPLPRQGVKRTYSEVYPGQQYLQG--GQYAPSTAQFAPSPGQPPA 300
PGP P+ P P PG Q QG G+ A P PP
Sbjct: 174 GISVPGPMGPSGPRGLPGPPGA---------PGPQGFQGPPGEPGEPGASGPMGPRGPPG 224
Query: 301 P-----------SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKP-TRSIPG 338
P P PG R P PGP G P T +PG
Sbjct: 225 PPGKNGDDGEAGKPGRPGERGP-----------PGPQGARGLPGTAGLPG 263
Score = 37.4 bits (85), Expect = 0.063
Identities = 46/159 (28%), Positives = 58/159 (36%), Gaps = 29/159 (18%)
Query: 699 PGAA-PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISY 757
PGA+ P P PP P + G+ PG E PP P A PG
Sbjct: 211 PGASGPMGPRGPPGPPGKNGDDGEAGK---PGRPGERGPPG----PQGARGLPGT----- 258
Query: 758 QSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPP--GPQLHHSNPP 815
+ +P + + + L AG P PG+PG + GAP GP+
Sbjct: 259 -AGLPG--MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN----GAPGQMGPR-----GL 306
Query: 816 PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAP 854
P R G GP G ATG GPP +G P
Sbjct: 307 PGERGRPGAP--GPAGARGNDGATGAAGPPGPTGPAGPP 343
Score = 36.6 bits (83), Expect = 0.11
Identities = 43/161 (26%), Positives = 53/161 (32%), Gaps = 20/161 (12%)
Query: 706 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFP--PTTPSTPTLAEFTPGPPPISYQSDIPS 763
P PP P PG G E+ P P P P A GP Q
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGP-----QGPRGD 1095
Query: 764 SLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH-TSNLGAPPGPQLHHSNPPPASRQSL 822
T E+ + +G P PG+PG S P GP+ PP S +
Sbjct: 1096 KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR-----GPPGSAGAP 1150
Query: 823 GQASL-------GPTGELAFSPATGVMGPPSMSGAGEAPEP 856
G+ L GP G + G +GPP G P P
Sbjct: 1151 GKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGP 1191
Score = 36.2 bits (82), Expect = 0.14
Identities = 49/182 (26%), Positives = 62/182 (34%), Gaps = 26/182 (14%)
Query: 699 PGAA-------PFAPLQPPSVPAPSDYPG----QGSSFLGPGTFPESFPPTTPSTPTLAE 747
PGAA P PP P P+ G +G + GP P P P P +
Sbjct: 877 PGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGET--GPAGRPGEVGPPGPPGPAGEK 934
Query: 748 FTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLD---PTHNPGTPGLH-TSNLG 802
+PG + P + ++ LP Q G P+ PG G S
Sbjct: 935 GSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGER 994
Query: 803 APPGPQLHH--SNPPPASRQSLGQASLGPTGELAFSPA------TGVMGPPSMSGAGEAP 854
PPGP + PP S + + G G A TG GPP GA AP
Sbjct: 995 GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAP 1054
Query: 855 EP 856
P
Sbjct: 1055 GP 1056
Score = 35.0 bits (79), Expect = 0.31
Identities = 42/149 (28%), Positives = 51/149 (34%), Gaps = 35/149 (23%)
Query: 710 PSVPAPSDYPG-QGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTS 768
P +P PS PG QG S G E PP P LA GPP S + P + +
Sbjct: 973 PGLPGPSGEPGKQGPS----GASGERGPPGPMGPPGLA----GPPGESGREGAPGAEGSP 1024
Query: 769 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 828
+ + P G P PG PG + PGP +G
Sbjct: 1025 GRDGS--PGAKGDRGETGPAGPPGAPGAPGA-----PGP-------------------VG 1058
Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEPA 857
P G+ TG GP G A PA
Sbjct: 1059 PAGKSGDRGETGPAGPAGPVGPVGARGPA 1087
Score = 33.5 bits (75), Expect = 0.91
Identities = 55/208 (26%), Positives = 66/208 (31%), Gaps = 52/208 (25%)
Query: 701 AAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFP-ESFPPTTPSTP--------TLAEFTPG 751
A P P P P + PGQ +GP P E P P T A PG
Sbjct: 280 AGPAGPKGEPGSPGENGAPGQ----MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG 335
Query: 752 PPPISYQSDIPSSL-------------LTSEKSTACLPSQMAPAGHLDPTHNPGT---PG 795
P + P ++ + P PAG P NPG PG
Sbjct: 336 PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPG 395
Query: 796 LHTSN-----LGA--------PPGPQLHHSNPPPASRQSLGQ----ASLGPTGELAFSPA 838
+N GA P GPQ PP + + G+ S G TG
Sbjct: 396 AKGANGAPGIAGAPGFPGARGPSGPQ--GPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGP 453
Query: 839 TGVMGPPSMSG----AGEAPEPALDLLP 862
GV GPP +G G EP LP
Sbjct: 454 VGVQGPPGPAGEEGKRGARGEPGPTGLP 481
Score = 33.5 bits (75), Expect = 0.91
Identities = 47/162 (29%), Positives = 57/162 (35%), Gaps = 25/162 (15%)
Query: 696 ALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 755
A GP P A QP + A + PG + PG FP + P+ P P PGP
Sbjct: 381 AAGPAGNPGADGQPGAKGA-NGAPGIAGA---PG-FPGARGPSGPQGPG---GPPGPKGN 432
Query: 756 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPP 815
S + P S K + P G P G G + PGP P
Sbjct: 433 SGEPGAPGS-----KGDTGAKGEPGPVGVQGPPGPAGEEGKRGAR--GEPGPT--GLPGP 483
Query: 816 PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPA 857
P R G G F A GV GP +G +P PA
Sbjct: 484 PGER--------GGPGSRGFPGADGVAGPKGPAGERGSPGPA 517
Score = 31.2 bits (69), Expect = 4.5
Identities = 41/157 (26%), Positives = 50/157 (31%), Gaps = 28/157 (17%)
Query: 713 PAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTSEKS 771
P + PG PG+ P T P P + PGPP P + K
Sbjct: 529 PGEAGLPGAKGLTGSPGS-PGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKG 587
Query: 772 TACLPSQMA------PAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQA 825
A P + P G + P G G PPGP PA +
Sbjct: 588 AAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQ-----GPPGPA------GPAGERG---- 632
Query: 826 SLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 862
GP G F G GPP GEA +P +P
Sbjct: 633 EQGPAGSPGFQGLPGPAGPP-----GEAGKPGEQGVP 664
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 62.8 bits (151), Expect = 1e-09
Identities = 108/404 (26%), Positives = 140/404 (34%), Gaps = 96/404 (23%)
Query: 16 HGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSSMMPG 75
HG + Y S +SA P +++ G G P A + +GS P
Sbjct: 205 HGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG----------GTPGSGAAAAAGSKPPP- 253
Query: 76 VAGGSSALTSPQCLGQQAF-AEGGANKGYVQQGV----------------YSRGGYPGAP 118
+ +SA +S QQ F A GG G S GY G P
Sbjct: 254 -SSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYP 312
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G Y+GGP G A ++ AAAAAA AAAA+ +Q+
Sbjct: 313 G--GDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGG---------------AQQ 355
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP---SGLSPLAMNPTRAA 235
S + M G S GG P +P G M P G +P + +
Sbjct: 356 RSHHAPMSPGSSGG------GGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPS 409
Query: 236 GMTPLYAGQRLPQ--HGYPG------PPQAQPLPRQGVKR------TYSEVYP--GQQ-- 277
G PQ HGYPG PQ P+ QG + +Y++ P GQQ
Sbjct: 410 G----------PQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGP 459
Query: 278 --YLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLH-----Y 330
Y Q GQ P Q +P P Q P P + P Q Q P L Y
Sbjct: 460 SGYGQQGQ-TPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPY 518
Query: 331 KPTRSIPGYPSSPLP---GNPTPPMTPSSSVPYMSPNQEVKSPF 371
S P + SP P T P S PY P + +SP+
Sbjct: 519 SQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQP--QAQSPY 560
Score = 39.7 bits (91), Expect = 0.013
Identities = 83/346 (23%), Positives = 124/346 (35%), Gaps = 68/346 (19%)
Query: 85 SPQCLGQQAFAEGGANKGYVQQGVYSRGGYP---------------GAPGFTTGYAGGPG 129
+P L QQA A QQ YS+ +P AP T+ GG
Sbjct: 569 APSTLSQQA-AYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSS-KGGQE 626
Query: 130 GLGLPSHAARPST--DFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGA 187
+ L S +RPS+ D + + + A + +T+ +++ Q +QS A
Sbjct: 627 DMNL-SLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNP--------A 677
Query: 188 GQSFNSQFLQH-GGPRGPSV-PAG------------MNPTGIGGVM----GPSGLSPLAM 229
F+ H G RGPS P G ++P + G PSG S M
Sbjct: 678 QSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIM 737
Query: 230 NPTR-----AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQY 284
+P+ A + ++PQ+ P P A PRQ Q G Y
Sbjct: 738 HPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALS-PRQPSGGQIHTGMGSYQQNSMGSY 796
Query: 285 APSTAQFAPSPGQPPAPS-PSYPGHRLPLQQGMTQSLSVPGPTG-LHYKPTRSIPGYPSS 342
P Q+ P G P P+ + P P GM ++ G G +H +P IP Y +
Sbjct: 797 GPQGGQYGPQGGYPRQPNYNALPNANYP-SAGMAGGINPMGAGGQMHGQP--GIPPYGTL 853
Query: 343 PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSG 388
P PG + + S P + ++ P + S P G
Sbjct: 854 P-PGR----------MSHASMGNRPYGPNMANMPPQVGSGMCPPPG 888
Score = 35.0 bits (79), Expect = 0.31
Identities = 48/188 (25%), Positives = 66/188 (35%), Gaps = 17/188 (9%)
Query: 706 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPP-TTPSTPTLAE----FTPGPPPISYQSD 760
P QPP +P+ YP Q S+ P+S PP + P + + P P +S Q+
Sbjct: 522 PSQPPHQQSPAPYPSQQST---TQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAA 578
Query: 761 IPSSLLTSEKSTACLPSQMAPAGHLDP----THNPGTPGLHTSNLGAPPGPQLHHSNPPP 816
P + TA + P L + P + TS+ G L + P
Sbjct: 579 YPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSM-TSSKGGQEDMNLSLQSRPS 637
Query: 817 ASRQSLGQASLGPTG-ELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLG 875
+ G P G E A SP G S GE PA T+P L G
Sbjct: 638 SLPDLSGSIDDLPMGTEGALSPGVSTSG--ISSSQGEQSNPAQSPFSPHTSP-HLPGIRG 694
Query: 876 PPDLPTNN 883
P P +
Sbjct: 695 PSPSPVGS 702
Score = 31.2 bits (69), Expect = 4.5
Identities = 38/128 (29%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 751 GPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLH 810
GP S+ P+ S APA L GTPG S A G
Sbjct: 197 GPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG-GTPG---SGAAAAAG---- 248
Query: 811 HSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPEL-TNPDE 869
S PPP+S S +S + F G G PS +G G A L +L T+P
Sbjct: 249 -SKPPPSSSASASSSS-SSFAQQRFGAMGG--GGPSAAGGGTPQPTATPTLNQLLTSPSS 304
Query: 870 LLSYLGPP 877
Y G P
Sbjct: 305 ARGYQGYP 312
Score = 30.8 bits (68), Expect = 5.9
Identities = 56/273 (20%), Positives = 80/273 (29%), Gaps = 54/273 (19%)
Query: 90 GQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYA-----GGPGGLGLPSHAARPSTDF 144
G F G YSR PG G GGP P +
Sbjct: 1241 GSDPFMSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNM 1300
Query: 145 TQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGP 204
+ A + + + + + Q++Q Q+ S+ +QF G P G
Sbjct: 1301 STGAPQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHD--------SYGNQFSTQGTPSGS 1352
Query: 205 SVPAGMNPT----------GIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGY--P 252
P+ + G GP A P GQ PQ P
Sbjct: 1353 PFPSQQTTMYQQQQQNYKRPMDGTYGPP-----AKRHEGEMYSVPYSTGQGQPQQQQLPP 1407
Query: 253 GPPQ-------AQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSY 305
PQ AQP P+Q V Y YP A + + P+ G
Sbjct: 1408 AQPQPASQQQAAQPSPQQDVYNQYGNAYPAT--------ATAATERRPAGG--------- 1450
Query: 306 PGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPG 338
P ++ P Q G + + PG P + + G
Sbjct: 1451 PQNQFPFQFGRDRVSAPPGTNAQQNMPPQMMGG 1483
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 62.8 bits (151), Expect = 1e-09
Identities = 108/404 (26%), Positives = 140/404 (34%), Gaps = 96/404 (23%)
Query: 16 HGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSSMMPG 75
HG + Y S +SA P +++ G G P A + +GS P
Sbjct: 205 HGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG----------GTPGSGAAAAAGSKPPP- 253
Query: 76 VAGGSSALTSPQCLGQQAF-AEGGANKGYVQQGV----------------YSRGGYPGAP 118
+ +SA +S QQ F A GG G S GY G P
Sbjct: 254 -SSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYP 312
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G Y+GGP G A ++ AAAAAA AAAA+ +Q+
Sbjct: 313 G--GDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGG---------------AQQ 355
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP---SGLSPLAMNPTRAA 235
S + M G S GG P +P G M P G +P + +
Sbjct: 356 RSHHAPMSPGSSGG------GGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPS 409
Query: 236 GMTPLYAGQRLPQ--HGYPG------PPQAQPLPRQGVKR------TYSEVYP--GQQ-- 277
G PQ HGYPG PQ P+ QG + +Y++ P GQQ
Sbjct: 410 G----------PQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGP 459
Query: 278 --YLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLH-----Y 330
Y Q GQ P Q +P P Q P P + P Q Q P L Y
Sbjct: 460 SGYGQQGQ-TPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPY 518
Query: 331 KPTRSIPGYPSSPLP---GNPTPPMTPSSSVPYMSPNQEVKSPF 371
S P + SP P T P S PY P + +SP+
Sbjct: 519 SQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQP--QAQSPY 560
Score = 39.7 bits (91), Expect = 0.013
Identities = 83/346 (23%), Positives = 124/346 (35%), Gaps = 68/346 (19%)
Query: 85 SPQCLGQQAFAEGGANKGYVQQGVYSRGGYP---------------GAPGFTTGYAGGPG 129
+P L QQA A QQ YS+ +P AP T+ GG
Sbjct: 569 APSTLSQQA-AYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSS-KGGQE 626
Query: 130 GLGLPSHAARPST--DFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGA 187
+ L S +RPS+ D + + + A + +T+ +++ Q +QS A
Sbjct: 627 DMNL-SLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNP--------A 677
Query: 188 GQSFNSQFLQH-GGPRGPSV-PAG------------MNPTGIGGVM----GPSGLSPLAM 229
F+ H G RGPS P G ++P + G PSG S M
Sbjct: 678 QSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIM 737
Query: 230 NPTR-----AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQY 284
+P+ A + ++PQ+ P P A PRQ Q G Y
Sbjct: 738 HPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALS-PRQPSGGQIHTGMGSYQQNSMGSY 796
Query: 285 APSTAQFAPSPGQPPAPS-PSYPGHRLPLQQGMTQSLSVPGPTG-LHYKPTRSIPGYPSS 342
P Q+ P G P P+ + P P GM ++ G G +H +P IP Y +
Sbjct: 797 GPQGGQYGPQGGYPRQPNYNALPNANYP-SAGMAGGINPMGAGGQMHGQP--GIPPYGTL 853
Query: 343 PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSG 388
P PG + + S P + ++ P + S P G
Sbjct: 854 P-PGR----------MSHASMGNRPYGPNMANMPPQVGSGMCPPPG 888
Score = 35.0 bits (79), Expect = 0.31
Identities = 48/188 (25%), Positives = 66/188 (35%), Gaps = 17/188 (9%)
Query: 706 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPP-TTPSTPTLAE----FTPGPPPISYQSD 760
P QPP +P+ YP Q S+ P+S PP + P + + P P +S Q+
Sbjct: 522 PSQPPHQQSPAPYPSQQST---TQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAA 578
Query: 761 IPSSLLTSEKSTACLPSQMAPAGHLDP----THNPGTPGLHTSNLGAPPGPQLHHSNPPP 816
P + TA + P L + P + TS+ G L + P
Sbjct: 579 YPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSM-TSSKGGQEDMNLSLQSRPS 637
Query: 817 ASRQSLGQASLGPTG-ELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLG 875
+ G P G E A SP G S GE PA T+P L G
Sbjct: 638 SLPDLSGSIDDLPMGTEGALSPGVSTSG--ISSSQGEQSNPAQSPFSPHTSP-HLPGIRG 694
Query: 876 PPDLPTNN 883
P P +
Sbjct: 695 PSPSPVGS 702
Score = 31.2 bits (69), Expect = 4.5
Identities = 38/128 (29%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 751 GPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLH 810
GP S+ P+ S APA L GTPG S A G
Sbjct: 197 GPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG-GTPG---SGAAAAAG---- 248
Query: 811 HSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPEL-TNPDE 869
S PPP+S S +S + F G G PS +G G A L +L T+P
Sbjct: 249 -SKPPPSSSASASSSS-SSFAQQRFGAMGG--GGPSAAGGGTPQPTATPTLNQLLTSPSS 304
Query: 870 LLSYLGPP 877
Y G P
Sbjct: 305 ARGYQGYP 312
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 62.8 bits (151), Expect = 1e-09
Identities = 79/290 (27%), Positives = 100/290 (34%), Gaps = 45/290 (15%)
Query: 58 GNPMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
G P AG PS + AG S T P+ G GG GY + + GY
Sbjct: 337 GEPSPGAGEPSKAGPSGATAGASGRATGPEAAG--GGGAGGGGGGY--RPIIQSPGYKTG 392
Query: 118 PGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G GY GG P +T Q+ A A A A+ A A Q Q
Sbjct: 393 KG---GYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQ 449
Query: 178 ELSQYGAMGAG------QSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
L A G G Q + GGP P P+G P G+ + +P
Sbjct: 450 GLLGPQAYGQGFGGGQAQDLSKAPSYSGGP--PQPPSGPPPPGLATCQ--------SYSP 499
Query: 232 TRAAGMTPLYAGQRLPQHGYPGP-PQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPST-- 288
+ G LY Q P YPGP +Q LP +YS + GG + PS+
Sbjct: 500 DQLQGQ--LYGVQGEP---YPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLG 554
Query: 289 -------------AQFAPSPGQPP-APSPSYPGHRLPLQQGMTQSLSVPG 324
Q P+ G+PP SP PG L L+ PG
Sbjct: 555 GGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPG 604
Score = 42.0 bits (97), Expect = 0.003
Identities = 54/201 (26%), Positives = 71/201 (35%), Gaps = 55/201 (27%)
Query: 200 GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQP 259
GP+ S P G PLA P PGPP P
Sbjct: 1412 GPKDTSTPDG---------------PPLA------------------PAAAVPGPP---P 1435
Query: 260 LPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQS 319
LP G+ S P L+ + P T AP+P P P P P LP
Sbjct: 1436 LP--GLPSANSNGTPEPPLLE--EKPPPTPPPAPTPQPQPPPPPPPPQPALP----SPPP 1487
Query: 320 LSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQE-----VKSPFLPD 374
L P P+ P +P P +P P PP P ++ P +P +E + P LPD
Sbjct: 1488 LVAPTPSS---PPPPPLPPPPPPAMPSPPPPP--PPAAAPLAAPPEEPAAPSPEDPELPD 1542
Query: 375 LKP-NLNSLHSSPSGSGPCDE 394
+P +L + + G DE
Sbjct: 1543 TRPLHLAKKQETAAVCGETDE 1563
Score = 38.9 bits (89), Expect = 0.022
Identities = 38/122 (31%), Positives = 45/122 (36%), Gaps = 28/122 (22%)
Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLG----PGTFPESFPPTTPSTPTLAEFTPGPPP 754
P P AP +VP P PG S+ P E PPT P PT + P PPP
Sbjct: 1419 PDGPPLAPAA--AVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPT-PQPQPPPPP 1475
Query: 755 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 814
Q +PS P +AP P+ P P L PP P + P
Sbjct: 1476 PPPQPALPSP-----------PPLVAPT----PSSPPPPP------LPPPPPPAMPSPPP 1514
Query: 815 PP 816
PP
Sbjct: 1515 PP 1516
Score = 38.5 bits (88), Expect = 0.028
Identities = 43/156 (27%), Positives = 53/156 (33%), Gaps = 50/156 (32%)
Query: 202 RGPSVPA--GMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQP 259
+ P+VP+ G GGV+GP+GL P P R PGPP P
Sbjct: 195 QAPTVPSSLGFERLAGGGVLGPAGLGPAQTPPYR------------------PGPPDPPP 236
Query: 260 LPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG----QPPAPSPSYPGHRLPLQQG 315
PR P Q L A + A SP AP P P LP Q
Sbjct: 237 PPRH---------LPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAPGPPPPERALPRQDT 287
Query: 316 MTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPP 351
+ + HY+ P+S P P PP
Sbjct: 288 VIK----------HYQ-------RPASAQPPPPPPP 306
Score = 35.8 bits (81), Expect = 0.18
Identities = 77/326 (23%), Positives = 100/326 (30%), Gaps = 47/326 (14%)
Query: 62 GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
G G GS ++ G G + T + Q + + G G GA +
Sbjct: 614 GYKGKGDGSELLAGPGGPPAERTEDEEFLIQHLLQAPSPPR--TSGADGLVGEDGAADAS 671
Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATV----AALQEKQSQ 177
G G G G P + + Q +V +A+ ATA + L+EK+
Sbjct: 672 KGLGGSGGAGGPPGTPYELAKEDPQRYHLQSVIRTSASLDEGATAALELGLGRLKEKKKG 731
Query: 178 E----------LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPL 227
+ GAG FLQ P P PT P GL
Sbjct: 732 PERGGETPEGLATSVVHYGAGAKELGAFLQKSPPPPPPTAQSTQPT-------PHGLLLE 784
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPS 287
A P LP P PPQ P V P + P+
Sbjct: 785 AGGPD-------------LPLVLPPPPPQLLP----SVLSHAPSPSPSASKVGVHLLEPA 827
Query: 288 TAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSI--PGYPSSPLP 345
T AP P PP P P P L L+ + P +P S+ PG L
Sbjct: 828 TRDGAPQPPPPPPPPP--PPMPLQLEAHLRSHGLEPAAPSPRLRPEESLDPPGAMQELLG 885
Query: 346 G-NPTPPMTPSSSVPYMSPNQEVKSP 370
P PP + V PN E K P
Sbjct: 886 ALEPLPPAPGDTGVG--PPNSEGKDP 909
Score = 33.9 bits (76), Expect = 0.69
Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 23/142 (16%)
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP-SP 295
M ++ G +G GPP+ + P+ G PG P+ + P P
Sbjct: 950 MEEMFGGGAADDYGKAGPPEDEGDPKAGAGPP-----PGP---------PAYDPYGPYCP 995
Query: 296 GQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPS 355
G+ P PG G+ + P+ ++ +P I P P P PP P
Sbjct: 996 GRASGAGPETPG------LGLDPNKPPELPSTVNAEPLGLIQSGPHQAAP--PPPPPPPP 1047
Query: 356 SSVPYMSPNQEVKSPFLPDLKP 377
P P + SP KP
Sbjct: 1048 PPAPASEPKGGLTSPIFCSTKP 1069
Score = 33.9 bits (76), Expect = 0.69
Identities = 38/127 (29%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 286 PSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPS-SPL 344
P A A PG PP P LP S P P L KP + P P+ P
Sbjct: 1422 PPLAPAAAVPGPPPLPG-------LP----SANSNGTPEPPLLEEKPPPTPPPAPTPQPQ 1470
Query: 345 PGNPTPPMTPS--SSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVR 402
P P PP P+ S P ++P SP P L P SP P L P
Sbjct: 1471 PPPPPPPPQPALPSPPPLVAPTP--SSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPE 1528
Query: 403 DGVVLEP 409
+ P
Sbjct: 1529 EPAAPSP 1535
Score = 33.5 bits (75), Expect = 0.91
Identities = 46/222 (20%), Positives = 75/222 (33%), Gaps = 31/222 (13%)
Query: 655 KPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI-----------------AAL 697
+P PV + +++ P P + L PS + A L
Sbjct: 160 RPFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPSQAPTVPSSLGFERLAGGGVLGPAGL 219
Query: 698 GPGAAP-FAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPIS 756
GP P + P P P P P Q + + ++P + PGPPP
Sbjct: 220 GPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAPGPPPPE 279
Query: 757 YQSDIPSSLLTS-EKSTACLPSQMAPAGHLDPTH---NPGTPGL-HTSNLGAPPGPQLHH 811
+++ ++ + P P H + P + H +NL P L
Sbjct: 280 RALPRQDTVIKHYQRPASAQPPPPPPPAHALQHYLSCGGSYPSMGHRANLACSP---LGG 336
Query: 812 SNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEA 853
P P + + + GP+G A + A+G P +G G A
Sbjct: 337 GEPSPGAGE---PSKAGPSG--ATAGASGRATGPEAAGGGGA 373
Score = 32.7 bits (73), Expect = 1.5
Identities = 37/136 (27%), Positives = 44/136 (32%), Gaps = 22/136 (16%)
Query: 719 PGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQ 778
PGQ LGP + + F + A G PP P L T + + P Q
Sbjct: 445 PGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGPPQPPSGPPPPGLATCQSYS---PDQ 501
Query: 779 MAPAGHLDPTHNPGTPGLHTSNLGAP-PGPQLHHSNPPPASRQSLGQASLGPTGELAFSP 837
+ G G P PGP H P AS P A S
Sbjct: 502 L--------------QGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSP----ALSG 543
Query: 838 ATGVMGPPSMSGAGEA 853
G GP S+ G GEA
Sbjct: 544 HGGGWGPSSLGGGGEA 559
Score = 31.2 bits (69), Expect = 4.5
Identities = 48/166 (28%), Positives = 60/166 (36%), Gaps = 36/166 (21%)
Query: 706 PLQPPSVPAPSD----------------YPGQGSSFLGPGTFPESFPPTTPSTPTLAEFT 749
P QPPS P P Y QG + GP + P +PS L+ T
Sbjct: 479 PPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGLPTASPS---LSYST 535
Query: 750 PGPPPISYQSD--IPSSL---LTSEKSTACLPSQMAPA-GHLDPTHNPGTPGLHTSNLGA 803
P +S PSSL + S P Q PA G +PG PG + S++ A
Sbjct: 536 GHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLA 595
Query: 804 PPGPQLHHSNPPPASRQSLGQASL---GPTGELAFSPATGVMGPPS 846
P L PP A + G G EL P GPP+
Sbjct: 596 -SAPFL---APPGAGSYAAGAGGYKGKGDGSELLAGPG----GPPA 633
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 58.9 bits (141), Expect = 2e-08
Identities = 89/309 (28%), Positives = 102/309 (33%), Gaps = 37/309 (11%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEG--GANKGYVQQGVYSRGGYPGA 117
P GP G P+G PG G + PQ L G G N + G G PGA
Sbjct: 616 PQGPPG-PTG----PGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGA 670
Query: 118 PGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
PG G AG PG G P A P A A A Q
Sbjct: 671 PG-GKGDAGAPGERGPPGLAGAPG--LRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGM 727
Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGM 237
+ G G + + GGP VP P G G +GP G P + G
Sbjct: 728 PGERGGLGSPGPKGDKG--EPGGPGADGVPGKDGPRGPTGPIGPPG--PAGQPGDKGEGG 783
Query: 238 TPLYAGQRLP-----QHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGG---QYAPSTA 289
P G P + G GPP P PGQ GG + AP
Sbjct: 784 APGLPGIAGPRGSPGERGETGPPGPAGFPGA----------PGQNGEPGGKGERGAPGEK 833
Query: 290 QFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVP-GPTGLHYKPTRSIPGYPSSPLPGNP 348
PG P S P P QG+ P GP + R +PG P S GNP
Sbjct: 834 GEGGPPGVAGPPGGSGPAGP-PGPQGVKGERGSPGGPGAAGFPGARGLPGPPGS--NGNP 890
Query: 349 TPPMTPSSS 357
PP PS S
Sbjct: 891 GPP-GPSGS 898
Score = 54.3 bits (129), Expect = 5e-07
Identities = 99/401 (24%), Positives = 124/401 (30%), Gaps = 75/401 (18%)
Query: 13 PAPHGD----GSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP--MGPAGS 66
P P GD G + VP + P G + G+ + G P GP GS
Sbjct: 737 PGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGS 796
Query: 67 PS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT--T 122
P G + PG AG P GQ G +G G GG PG G +
Sbjct: 797 PGERGETGPPGPAG------FPGAPGQNGEPGGKGERG--APGEKGEGGPPGVAGPPGGS 848
Query: 123 GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQY 182
G AG PG G+ P A + + +
Sbjct: 849 GPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPA 908
Query: 183 GAMGAGQSFN--------SQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLS--PLAMNPT 232
G GA S Q + G P P P GI G+ G GL+ P P
Sbjct: 909 GNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPR 968
Query: 233 RAAGMTPLYAGQRLP----QHGYPGPPQAQPLPRQGVKRTYSEV----YPGQQYLQGGQY 284
+ G + P G GPP Q LP G+ T E PG L G
Sbjct: 969 GSPGPQGVKGESGKPGANGLSGERGPPGPQGLP--GLAGTAGEPGRDGNPGSDGLPGRDG 1026
Query: 285 APSTAQFAPSPGQPPAP-SPSYPGHRLPL----------QQGMTQSLSVPGPTGLHYKPT 333
+P G P AP +P +PG P+ + G PGP G +
Sbjct: 1027 SPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAG-----S 1081
Query: 334 RSIPGYPSSP--------------------LPGNPTPPMTP 354
R PG P P PGNP P +P
Sbjct: 1082 RGAPG-PQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSP 1121
Score = 53.9 bits (128), Expect = 6e-07
Identities = 89/349 (25%), Positives = 112/349 (32%), Gaps = 59/349 (16%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
PMGP G+P G PG+ G + A N G +G + G PG PG
Sbjct: 298 PMGPRGAP-GERGRPGLPGAAGAR---------------GNDG--ARGSDGQPGPPGPPG 339
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
T G+ G PG G A P ++ A A E+
Sbjct: 340 -TAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEM 398
Query: 180 SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPLAMNP----TRA 234
G GA G RGP PAG N G+ G G G + P R
Sbjct: 399 GPAGIPGAPGLM--------GARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERG 450
Query: 235 AGMTPLYAGQRLP--QHGYPGPPQAQPLPRQGVKR--------TYSEVYPGQQYLQGGQY 284
P G + + G PG P A LP +R PG++ G +
Sbjct: 451 EAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERG 510
Query: 285 APSTAQFAPSPGQPPAPS-PSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSS 342
AP A + G+P P PG R +P G S PGP G G
Sbjct: 511 APGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQ--------GESGR 562
Query: 343 PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGP 391
P P P+ P + + P D P N P G GP
Sbjct: 563 PGPPGPSGPRGQPGVMGFPGPKGN-------DGAPGKNGERGGPGGPGP 604
Score = 48.9 bits (115), Expect = 2e-05
Identities = 105/434 (24%), Positives = 129/434 (29%), Gaps = 90/434 (20%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQ------QSATQPAGSLSVVTTVWGVGNATQSQVLGN 59
P P + +P G G +P + PAG+ G G ++ G
Sbjct: 383 PGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGE 442
Query: 60 PMGPAGSPSGSSMMPGVAGGSS------------ALTSPQCLGQQAF----AEGGANKGY 103
P GP G G + +PGV G A P G++ G N
Sbjct: 443 P-GPRGE-RGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIP 500
Query: 104 VQQGVYSRGGYPGAPG--------FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAA 155
++G G PG G G GGPG G+P P +D + +
Sbjct: 501 GEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGES 560
Query: 156 AAATATATATATVAALQEKQSQELSQYGAMG-AGQSFNSQFLQHGGPRG-PSVPAGMNPT 213
S Q G MG G N G RG P P P
Sbjct: 561 GRPGPPGP------------SGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPP 608
Query: 214 GIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQG--VKRTYSE 271
G G GP G P P G T G PGP Q LP G
Sbjct: 609 GKNGETGPQG-PPGPTGPGGDKGDT-----------GPPGPQGLQGLPGTGGPPGENGKP 656
Query: 272 VYPGQQYLQGGQYAPSTAQFAPSPGQ-----------------PPAPS--------PSYP 306
PG + G AP A +PG+ PP P P P
Sbjct: 657 GEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPP 716
Query: 307 GHR-LPLQQGM---TQSLSVPGPTGLHYKP-TRSIPGYPSSPLPGNPTPPMTPSSSVPYM 361
G P QGM L PGP G +P G P P PT P+ P
Sbjct: 717 GAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQP 776
Query: 362 SPNQEVKSPFLPDL 375
E +P LP +
Sbjct: 777 GDKGEGGAPGLPGI 790
Score = 47.0 bits (110), Expect = 8e-05
Identities = 95/356 (26%), Positives = 114/356 (32%), Gaps = 54/356 (15%)
Query: 12 PPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSS 71
PP P G + P Q +P G G A + G P G AG P GS
Sbjct: 805 PPGPAG-----FPGAPGQNG--EPGGK--------GERGAPGEKGEGGPPGVAGPPGGSG 849
Query: 72 MM--PGVAGGSSALTSPQCLGQQAF--AEG-----GANKGYVQQGVYSRGGYPGAPG--F 120
PG G SP G F A G G+N G G G PG
Sbjct: 850 PAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAG 909
Query: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
TG G PG G A +P + A A A A
Sbjct: 910 NTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRG 969
Query: 181 QYGAMGA-GQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP----TRAA 235
G G G+S G RGP P G+ G+ G G G NP
Sbjct: 970 SPGPQGVKGESGKPGANGLSGERGPPGPQGL--PGLAGTAGEPGRDG---NPGSDGLPGR 1024
Query: 236 GMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSP 295
+P G R ++G PG P A P V P + G+ P+ AP P
Sbjct: 1025 DGSPGGKGDR-GENGSPGAPGAPGHPGPP-----GPVGPAGKSGDRGESGPAGPAGAPGP 1078
Query: 296 -GQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTP 350
G AP P P +G G G+ K R PG P + PG+P P
Sbjct: 1079 AGSRGAPGPQGP-------RGDKGETGERGAAGI--KGHRGFPGNPGA--PGSPGP 1123
Score = 41.6 bits (96), Expect = 0.003
Identities = 47/178 (26%), Positives = 57/178 (32%), Gaps = 30/178 (16%)
Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTP--TLAEFTPGPPPIS 756
PG A F P P + PG PG E PP P + PGP +
Sbjct: 806 PGPAGF-----PGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVK 860
Query: 757 YQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTS-NLGAPPGPQLHHSNP- 814
+ P A P G NPG PG S PPGP + P
Sbjct: 861 GERGSPGG-----PGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPG 915
Query: 815 ------------PPASRQSLGQ----ASLGPTGELAFSPATGVMGPPSMSGAGEAPEP 856
P + S G + GP G + A G+ GPP M G +P P
Sbjct: 916 SPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGP 973
Score = 40.8 bits (94), Expect = 0.006
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 772 TACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHS-----NPPPASRQSLGQAS 826
TA P G + P +PG+ G PGPQ H PP + G+
Sbjct: 340 TAGFPGSPGAKGEVGPAGSPGSNGAPGQR--GEPGPQGHAGAQGPPGPPGINGSPGGKGE 397
Query: 827 LGPTGELAFSPATGVMGPPSMSGAGEAP 854
+GP G G GPP +GA AP
Sbjct: 398 MGPAGIPGAPGLMGARGPPGPAGANGAP 425
Score = 38.5 bits (88), Expect = 0.028
Identities = 46/170 (27%), Positives = 56/170 (32%), Gaps = 26/170 (15%)
Query: 694 IAALGPGAAPFAPLQPPSVPAPSDYPGQGSS--FLGPGTFPESFPPTTPSTPTLAEFTPG 751
+ L P P PP P S +PG S + GP P P+ P P A G
Sbjct: 166 VGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSG 225
Query: 752 PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGL--------HTSNLGA 803
P +S P E+ P PAG PG PG+ G
Sbjct: 226 PAGKDGESGRPGR--PGERGLPGPPGIKGPAG------IPGFPGMKGHRGFDGRNGEKGE 277
Query: 804 PPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEA 853
P L N P + G +GP G A G G P + GA A
Sbjct: 278 TGAPGLKGENGLPGENGAPG--PMGPRG------APGERGRPGLPGAAGA 319
Score = 36.6 bits (83), Expect = 0.11
Identities = 50/175 (28%), Positives = 61/175 (34%), Gaps = 14/175 (8%)
Query: 199 GGPRGPSVPAGMNPTGIGGVMGPSGL--SPLAMNPTRAAGMTPLYAGQRLP-QHGYPGPP 255
G P P P P G G GPSG P A+ P+ AG P + G PGPP
Sbjct: 189 GHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPP 248
Query: 256 QAQ-PLPRQGVKRTYS-EVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQ 313
+ P G + G+ +G AP PG+ AP P P P +
Sbjct: 249 GIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGP-RGAPGE 307
Query: 314 QGMTQSLSVPGPTGLHYKP-TRSIPGYPSSPLP----GNPTPPMTPSSSVPYMSP 363
+G +PG G R G P P P G P P P SP
Sbjct: 308 RGRP---GLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 359
Score = 35.4 bits (80), Expect = 0.24
Identities = 44/168 (26%), Positives = 54/168 (32%), Gaps = 27/168 (16%)
Query: 698 GPGA-------APFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTP 750
GPGA P P P P P+ PG PG + P +P
Sbjct: 748 GPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGE----RGET 803
Query: 751 GPP-PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQL 809
GPP P + + K P + G P G PG S PPGPQ
Sbjct: 804 GPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGG---PPGVAGPPG--GSGPAGPPGPQG 858
Query: 810 HHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPA 857
+ S G G F A G+ GPP +G P P+
Sbjct: 859 VKGE----------RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPS 896
Score = 34.7 bits (78), Expect = 0.41
Identities = 46/175 (26%), Positives = 58/175 (33%), Gaps = 51/175 (29%)
Query: 200 GPRGPSVPAGMNPTGIGGVMGPSGL-----SPLAMNPTRAAGMTPLYAGQRLPQH----- 249
GP+GP G P GI G G G+ SP + P P PQ+
Sbjct: 103 GPQGPKGDPG--PPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDV 160
Query: 250 ----------GYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPP 299
GYPGP P P PG G +P + + PG+P
Sbjct: 161 KSGVAVGGLAGYPGPA-GPPGP------------PGPPGTSGHPGSPGSPGYQGPPGEPG 207
Query: 300 APSPSYP-------GHRLPL-------QQGMTQSLSVPGPTGLHYKPTRSIPGYP 340
PS P G P + G +PGP G+ K IPG+P
Sbjct: 208 QAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGI--KGPAGIPGFP 260
Score = 34.7 bits (78), Expect = 0.41
Identities = 48/189 (25%), Positives = 60/189 (31%), Gaps = 38/189 (20%)
Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE 769
P P P PG+ T P+ P P+ P + GPP +P
Sbjct: 599 PGGPGPQGPPGKNGE-----TGPQG--PPGPTGPGGDKGDTGPPGPQGLQGLPG------ 645
Query: 770 KSTACLPSQMAPAGHLDPTHNPGTPGLH--TSNLGAP-----PG----PQLHHSNPPPAS 818
T P + G P + G PG + GAP PG P L PP
Sbjct: 646 --TGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGP 703
Query: 819 RQSLGQASLGPTGELAFSPATGVMGPPSMSGA----------GEAPEPALDLLPELTNPD 868
G A GP G + G+ G P G GE P D +P P
Sbjct: 704 EGGKGAA--GPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPR 761
Query: 869 ELLSYLGPP 877
+GPP
Sbjct: 762 GPTGPIGPP 770
Score = 33.9 bits (76), Expect = 0.69
Identities = 50/177 (28%), Positives = 61/177 (34%), Gaps = 31/177 (17%)
Query: 698 GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISY 757
GP AP P + PG+ GPG P +P P ++ PGPP
Sbjct: 504 GPAGERGAP-GPAGPRGAAGEPGRDGVPGGPGM---RGMPGSPGGPG-SDGKPGPPGSQG 558
Query: 758 QSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLG-APPGPQLHHSNPPP 816
+S P S Q G P N G PG + G PGPQ PP
Sbjct: 559 ESGRPGPPGPSGPR-----GQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQ----GPPG 609
Query: 817 ASRQSLGQASLGPTGE--------------LAFSPATGVMGPPSMSGAGEAPEPALD 859
+ ++ Q GPTG L P TG GPP +G P P D
Sbjct: 610 KNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTG--GPPGENGKPGEPGPKGD 664
Score = 33.5 bits (75), Expect = 0.91
Identities = 40/156 (25%), Positives = 48/156 (30%), Gaps = 24/156 (15%)
Query: 713 PAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP----PISYQSDIPSSL--- 765
P PG+ S G G E+ P P P PGPP P D S
Sbjct: 1016 PGSDGLPGRDGSPGGKGDRGENGSPGAPGAPG----HPGPPGPVGPAGKSGDRGESGPAG 1071
Query: 766 ---LTSEKSTACLPSQMAPAGHLDPTHNPGTPGL--HTSNLGAPPGPQLHHSNPPPASRQ 820
+ P P G T G G+ H G P P +P PA +Q
Sbjct: 1072 PAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAP----GSPGPAGQQ 1127
Query: 821 SLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEP 856
++G G G GPP G P P
Sbjct: 1128 G----AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGP 1159
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 58.9 bits (141), Expect = 2e-08
Identities = 108/393 (27%), Positives = 133/393 (33%), Gaps = 66/393 (16%)
Query: 6 PMKPALPPAPHG-DGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA 64
P KP P P G GS + P + P G+ G Q G P GP
Sbjct: 362 PGKPG-PMGPLGIPGSSGFPGNPGMKGEAGPTGARGPE------GPQGQRGETGPP-GPV 413
Query: 65 GSPS--GSSMMPGVAGGSSALTSPQCLGQQAFA----EGGANKGYVQQGVYSRGGYPGAP 118
GSP G+ G G SP G A G QG+ + G PG P
Sbjct: 414 GSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVP 473
Query: 119 GFTTGYAG-----GPGGL----GLPSHAAR--PSTDFTQAAAAAAVAAAAATATATATAT 167
GF G AG GP G+ G P + P D V A +
Sbjct: 474 GFK-GEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGS 532
Query: 168 VAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPL 227
K +Q + G +G+ SQ G P P +P TG GV GP G
Sbjct: 533 DGLPGPKGAQ--GERGPVGSSGPKGSQG-DPGRPGEPGLPGARGLTGNPGVQGPEG---- 585
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPS 287
+ P A G + G PGPP + + Q S PG + G P
Sbjct: 586 KLGPLGAPG-----------EDGRPGPPGSIGIRGQ----PGSMGLPGPKGSSGDPGKPG 630
Query: 288 TAQFAPSPGQPPAP------SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPS 341
A A PGQ AP PS P P G PGPTG + +PG P
Sbjct: 631 EAGNAGVPGQRGAPGKDGEVGPSGPVGP-PGLAGERGEQGPPGPTGF-----QGLPGPPG 684
Query: 342 SP----LPGNPTPPMTPSSSVPYMSPNQEVKSP 370
P PG+ P P + P + P E +P
Sbjct: 685 PPGEGGKPGDQGVPGDPGAVGP-LGPRGERGNP 716
Score = 55.5 bits (132), Expect = 2e-07
Identities = 98/386 (25%), Positives = 124/386 (32%), Gaps = 57/386 (14%)
Query: 33 TQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQ 92
T P V + G GN + G G P ++ G+ G P G +
Sbjct: 87 TPPGECCPVCSQTPGGGNTNFGR---GRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPR 143
Query: 93 AFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTD-----FTQA 147
E G +G G PG PG PG G P H + P D F+
Sbjct: 144 G--ERGPKGRPGPRGPQGIDGEPGVPG-------QPGAPGPPGHPSHPGPDGLSRPFSAQ 194
Query: 148 AAAAAVAAAAATATATATATVAALQEKQSQEL-SQYGAMGAGQSFNSQFLQHGGPRGPSV 206
A + + +V + + Q L Q G GAG + G P P
Sbjct: 195 MAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQG--GAGPT--------GPPGEPGD 244
Query: 207 PAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVK 266
P M P G G GP G P R + G+PG P LP G+K
Sbjct: 245 PGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAP---GLP--GLK 299
Query: 267 RTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPT 326
+ G + +G AP + A G A P P +P ++G PG
Sbjct: 300 G--HRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP-RGMPGERGRLGPQGAPGQR 356
Query: 327 GLHYKPTRSIPGYP-----SSPLPGNP-----------TPPMTPSSSVPYMSPNQEVKSP 370
G H P + P P SS PGNP P P P V SP
Sbjct: 357 GAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSP 416
Query: 371 FLP-----DLKPNLNSLHSSPSGSGP 391
LP D P SP SGP
Sbjct: 417 GLPGAIGTDGTPGAKGPTGSPGTSGP 442
Score = 46.2 bits (108), Expect = 1e-04
Identities = 102/414 (24%), Positives = 131/414 (31%), Gaps = 95/414 (22%)
Query: 9 PALPPAPHGD-GSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSP 67
PA PP GD G + P PAG+ V G + + G P GPAG+P
Sbjct: 958 PAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLP-GPAGTP 1016
Query: 68 SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT-----T 122
G G + P +G G+N + G G G PG
Sbjct: 1017 G----KVGPTGATGDKGPPGPVGPP-----GSNGPVGEPGPEGPAGNDGTPGRDGAVGER 1067
Query: 123 GYAGGPGGLGLPSHAARPSTDFTQAAAAAA----VAAAAATATATATATVAALQEKQSQ- 177
G G PG GLP P T A A + A L Q
Sbjct: 1068 GDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPR 1127
Query: 178 -ELSQYGAMG-AGQSFNSQFLQHGGPRGPSVPAG-MNPTGIGGVMGPSGLSPLAMNPTRA 234
+ +G G GQ + F G GP P G GI G GP G P + P+
Sbjct: 1128 GDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRG-PPGPVGPS-- 1184
Query: 235 AGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPS 294
+ G PGP P+ GV+ + E P
Sbjct: 1185 ------------GKEGNPGP--LGPIGPPGVRGSVGEAGP-----------------EGP 1213
Query: 295 PGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTP 354
PG+P P P PGP G I G+ +P +P P T
Sbjct: 1214 PGEPGPPGP-------------------PGPPGHLTAALGDIMGHYDESMP-DPLPEFTE 1253
Query: 355 SSSVPYMSPNQEVKSPFLPDLKPNLNSLHS------SPSGS-----GPCDELRL 397
+ P + K+ P + L SL S SP GS CD+L+L
Sbjct: 1254 DQAAP------DDKNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKL 1301
Score = 45.8 bits (107), Expect = 2e-04
Identities = 98/403 (24%), Positives = 127/403 (31%), Gaps = 69/403 (17%)
Query: 6 PMKPALP--------PAPHG-DGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQV 56
P +P LP P G +G P + P GS+ G+ S
Sbjct: 563 PGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSI-------GIRGQPGSMG 615
Query: 57 LGNPMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPG 116
L P G +G P PG AG + G+ E G + G+ G G
Sbjct: 616 LPGPKGSSGDPG----KPGEAGNAGVPGQRGAPGKDG--EVGPSGPVGPPGLAGERGEQG 669
Query: 117 APGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQS 176
PG TG+ G PG G P +P A E
Sbjct: 670 PPG-PTGFQGLPGPPGPPGEGGKPGDQ----GVPGDPGAVGPLGPRGERGNPGERGEPGI 724
Query: 177 QELSQYGAMGAGQSFNSQFLQHG--GPRGPSVPAGM----NPTGIGGVMGPSGLSPL--- 227
L M G HG GP+G P+G P G+ G+ G G++
Sbjct: 725 TGLPGEKGMAGG---------HGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGP 775
Query: 228 -----AMNPTRAAGMTPLYAGQRLP-QHGYPGP-----PQAQPLPRQGVKRTYSEVYPGQ 276
+ A G + LP G PGP + +P PR V S PG
Sbjct: 776 KGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGS 835
Query: 277 QYLQGGQYAPSTAQFAPSPGQPPAP-SPSYPGHR----LPLQQGMTQSLSVPGPTGL-HY 330
+ G A A GQP P PG + P QG+ S GP G+
Sbjct: 836 RGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGL 895
Query: 331 KPTRSIPGYP-------SSPLPGNPTPPMTPSSSVPYMSPNQE 366
K R G P S+ G P P P + P P +E
Sbjct: 896 KGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKE 938
Score = 38.9 bits (89), Expect = 0.022
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 18/142 (12%)
Query: 727 GPGTFPESFPPTTPSTPTLAEFTPGP-----PPISYQSDIPSSLLTSEKSTAC-LPSQMA 780
G P P P+ PT + PGP PP S + P S + + A
Sbjct: 795 GARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGN--PGSRGENGPTGAVGFAGPQG 852
Query: 781 PAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSL-----GQASLGPTGELAF 835
P G PG PG + G+P GPQ +P P + G+ + GP G F
Sbjct: 853 PDGQPGVKGEPGEPG-QKGDAGSP-GPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGF 910
Query: 836 SPATGVMGPPSMSGAGEAPEPA 857
+ G +GPP +G AP PA
Sbjct: 911 PGSAGRVGPPGPAG---APGPA 929
Score = 38.5 bits (88), Expect = 0.028
Identities = 49/188 (26%), Positives = 62/188 (32%), Gaps = 9/188 (4%)
Query: 669 PDGPALKRCRTVSPAHVLMPSVMEMIA------ALGPGAAPFAPLQPPSVPAPSDYPGQG 722
P+GP +R T P V P + I A GP +P PP P PG
Sbjct: 397 PEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSP-GTSGPPGSAGPPGSPGPQ 455
Query: 723 SSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPA 782
S G + P P A P P Q I ++ P + P
Sbjct: 456 GSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPP 515
Query: 783 GHLDPTHNPGTPGLHTSN-LGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGV 841
G + PG G S+ L P G Q P +S Q G GE A G+
Sbjct: 516 GPVGERGAPGNRGFPGSDGLPGPKGAQ-GERGPVGSSGPKGSQGDPGRPGEPGLPGARGL 574
Query: 842 MGPPSMSG 849
G P + G
Sbjct: 575 TGNPGVQG 582
Score = 30.4 bits (67), Expect = 7.7
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 750 PGPP-PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ 808
PGPP I + S L K ++ P + AG+ G PG +G P GP
Sbjct: 599 PGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPG-KDGEVG-PSGPV 656
Query: 809 LHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG 849
PP + + Q GPTG F G GPP G
Sbjct: 657 ----GPPGLAGERGEQGPPGPTG---FQGLPGPPGPPGEGG 690
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 58.5 bits (140), Expect = 3e-08
Identities = 77/315 (24%), Positives = 94/315 (29%), Gaps = 62/315 (19%)
Query: 62 GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
GP G P +PG+ G +L P G++ Q G G PG PG
Sbjct: 491 GPPGQPG----LPGLPGPPGSLGFPGQKGEKG-----------QAGATGPKGLPGIPG-- 533
Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
PG G P P T + + L
Sbjct: 534 -----APGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG 588
Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAG---MNPTGIG--GVMGPSGLSPLAMNPTRAAG 236
G +F + G P P +P M P G G G +G G+ +A NP
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNP----- 643
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
G PG P + P Q + + PG G P PG
Sbjct: 644 -------------GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690
Query: 297 QPPAPS----PSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTR----SIPGYPSSP----- 343
P P P PG LP G +PGP G P R PG P P
Sbjct: 691 LPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGE 750
Query: 344 ----LPGNPTPPMTP 354
LPG P PP P
Sbjct: 751 PGFALPGPPGPPGLP 765
Score = 55.8 bits (133), Expect = 2e-07
Identities = 85/332 (25%), Positives = 112/332 (33%), Gaps = 62/332 (18%)
Query: 57 LGNPMGPAGS---PSGSSMMPGVAGGSSALTSPQCLGQQAFA--EGGANKGYVQQGVYSR 111
L P GPAG PS PG G + G+Q +G + G+
Sbjct: 433 LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGP 492
Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
G PG PG G PG LG P A A A
Sbjct: 493 PGQPGLPGLP----GPPGSLGFPGQKGEKGQ-----AGATGPKGLPGIPGAPGAPGFPGS 543
Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
+ + L+ G G S G P P +P G+ G+ GP G
Sbjct: 544 KGEPGDILTFPGMKGDKGELGSP----GAPGLPGLPGTPGQDGLPGLPGPKG-------- 591
Query: 232 TRAAGMTPLYAGQRLP--QHGYPG-PPQAQPLPRQGVKRTYSEVYP-GQQYLQGGQYAPS 287
G+T + G+R P G PG P P+ G + P G++ +QG
Sbjct: 592 -EPGGIT--FKGERGPPGNPGLPGLPGNIGPMGPPG----FGPPGPVGEKGIQG------ 638
Query: 288 TAQFAPSPGQPPAPSP--------SYPGH-RLPLQQGMTQSLSVPGPTGLHYKP------ 332
A +PGQP P P + PG LP G + +PG GL +P
Sbjct: 639 ---VAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIP 695
Query: 333 -TRSIPGYPSSPLPGNPTPPMTPSSSVPYMSP 363
++ PG P LPG P P P P +P
Sbjct: 696 GSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAP 727
Score = 50.8 bits (120), Expect = 5e-06
Identities = 81/335 (24%), Positives = 104/335 (31%), Gaps = 50/335 (14%)
Query: 62 GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYV-QQGVYSRGGYPGAPGF 120
G G P G S PG+ G +P GQ KG + G G G PG
Sbjct: 988 GDPGQP-GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG- 1045
Query: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
+G G PG GLP + + ++ +
Sbjct: 1046 PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGS----VG 1101
Query: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
G G + ++ G P P P P G G+ GP G NP P+
Sbjct: 1102 DPGLPGLPGTPGAK----GQPGLPGFPGTPGPPGPKGISGPPG------NPGLPGEPGPV 1151
Query: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
G G+PG QP P PG++ G P A PGQP
Sbjct: 1152 GGG------GHPG----QPGP------------PGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP----LPGNPTPPMTPSS 356
+P PG LP G +PG G +PG P PG PP P S
Sbjct: 1190 GNPGPPG--LPGLSGQKGDGGLPGIPG-----NPGLPGPKGEPGFHGFPGVQGPPGPPGS 1242
Query: 357 SVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGP 391
P + + P P +P P GP
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGP 1277
Score = 47.8 bits (112), Expect = 5e-05
Identities = 54/206 (26%), Positives = 69/206 (33%), Gaps = 52/206 (25%)
Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQ 758
PG P PP +P P PG PG + PP PGPP
Sbjct: 816 PGIGVQGPPGPPGIPGPIGQPGLHGI---PGEKGDPGPPGLD--------VPGPP----- 859
Query: 759 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN----------LGAPPGPQ 808
E+ + +P P G P +PG PG ++ + PPGP
Sbjct: 860 ---------GERGSPGIPGAPGPIG---PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907
Query: 809 LHHSNPPPASRQSL-------GQASL-GPTGELAFSPATGVMGPPS------MSGAGEAP 854
P + L GQ L GPTGE G+ GPP + GE
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 855 EPALDLLPELTNPDELLSYLGPPDLP 880
EP L +P ++ P G P P
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQP 993
Score = 47.4 bits (111), Expect = 6e-05
Identities = 100/410 (24%), Positives = 123/410 (30%), Gaps = 76/410 (18%)
Query: 6 PMKPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
P +P LP P GS + + Q AT P G + G+ A + G P G
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKG-------LPGIPGAPGAP--GFP-G 542
Query: 63 PAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTT 122
G P PG+ G L SP G Q G+ G G PG T
Sbjct: 543 SKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPG-----QDGLPGLPGPKGEPGGIT 597
Query: 123 -----GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G G PG GLP + A + + Q
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQ 657
Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAM-NPTRAAG 236
++Q G G + G P P +P GI G G G+ + + P G
Sbjct: 658 TITQPGKPGLPGNPGRDG-DVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKG 716
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
G PGPP A P R E PG G + P A P PG
Sbjct: 717 FP-----------GIPGPPGAPGTPG----RIGLEGPPGPPGFPGPKGEPGFALPGP-PG 760
Query: 297 QPPAPS----------------PSYPGHR----LPLQQGMTQSLSVPGPTGLHYKPTRSI 336
P P P PG LP +G PGP G P +
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGV 820
Query: 337 PGYPSSP-------------LPGNPTPPMTPSSSVPYMSPNQEVKSPFLP 373
G P P +PG P P VP P E SP +P
Sbjct: 821 QGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVP--GPPGERGSPGIP 868
Score = 47.4 bits (111), Expect = 6e-05
Identities = 99/369 (26%), Positives = 122/369 (33%), Gaps = 63/369 (17%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P P LP P G + P G + G Q GNP GP G
Sbjct: 1139 PGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG-FGNP-GPPG 1196
Query: 66 SPS-----GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG- 119
P G +PG+ G + L P+ G+ F G+ GV G PG+PG
Sbjct: 1197 LPGLSGQKGDGGLPGIPG-NPGLPGPK--GEPGF------HGF--PGVQGPPGPPGSPGP 1245
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAA----------AAVAAAAATATATATATVA 169
G G PG G P RP Q + +
Sbjct: 1246 ALEGPKGNPGPQGPPG---RPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLP 1302
Query: 170 ALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAM 229
L+ Q Q G N G P P P P+G+ G GP G P +
Sbjct: 1303 GLKGDQGPPGLQGNPGRPG--LNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEG-EPGLI 1359
Query: 230 NPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTA 289
P G+ P +GQ + G GPP G+ PGQ L+ G P
Sbjct: 1360 GPPGPPGL-PGPSGQSIIIKGDAGPP--------GI--------PGQPGLK-GLPGPQGP 1401
Query: 290 QFAPSPGQPPAPSPSYPGHR-LPLQQGMTQSLSVPGPTGLHYKP-TRSIPGYPS-SPLPG 346
Q P P PP PG LP G + G GL +P TR + G P L G
Sbjct: 1402 QGLPGPTGPPGD----PGRNGLP---GFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQG 1454
Query: 347 NPTPPMTPS 355
P PP T S
Sbjct: 1455 PPGPPGTSS 1463
Score = 46.6 bits (109), Expect = 1e-04
Identities = 74/299 (24%), Positives = 93/299 (31%), Gaps = 79/299 (26%)
Query: 62 GPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
GP G P G+ +PG+ G A PQ + G N G G+PG+PG
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGA-PGPQGIP-------GCN------GTKGERGFPGSPG 138
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
F G G PG G+P P + +
Sbjct: 139 FP-GLQGPPGPPGIPGMKGEPGSIIMSSLP------------------------------ 167
Query: 180 SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTP 239
G G G P P + PTGI G +GP G P M P G+
Sbjct: 168 ---GPKG----------NPGYPGPPGIQGLPGPTGIPGPIGPPG-PPGLMGPPGPPGLPG 213
Query: 240 LYAGQRL---------PQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQ 290
L + G GPP + + E G Q L G + P
Sbjct: 214 PKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPG 273
Query: 291 FAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP-LPGNP 348
PG PP G +QG PG G + +P IPG P P PG P
Sbjct: 274 IRGPPG-PPGGEKGEKG-----EQGEPGKRGKPGKDGENGQP--GIPGLPGDPGYPGEP 324
Score = 46.2 bits (108), Expect = 1e-04
Identities = 58/192 (30%), Positives = 73/192 (38%), Gaps = 21/192 (10%)
Query: 698 GPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 755
GP P P P P +P PG GT E P +P P L + PGPP I
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPGI 151
Query: 756 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLG--APPGPQ--LHH 811
P S++ S LP G+ P G PG T G PPGP +
Sbjct: 152 PGMKGEPGSIIMSS-----LPGPKGNPGYPGPPGIQGLPG-PTGIPGPIGPPGPPGLMGP 205
Query: 812 SNPP--PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 869
PP P + ++G GP GE G+ GPP G + +D+ E D+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKG---EQGLQGPPGPPGQISEQKRPIDV--EFQKGDQ 260
Query: 870 -LLSYLGPPDLP 880
L GPP P
Sbjct: 261 GLPGDRGPPGPP 272
Score = 45.1 bits (105), Expect = 3e-04
Identities = 97/379 (25%), Positives = 116/379 (30%), Gaps = 68/379 (17%)
Query: 6 PMKPALPPAPHGDGSFAYES---VPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
P KP LP P DG +P Q GS + G+G L P G
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE-PGIPGIG-------LPGPPG 713
Query: 63 PAGSPS--GSSMMPGVAG--------GSSALTSPQCLGQQAFAEGGAN--------KGYV 104
P G P G PG G G P+ G+ FA G KG +
Sbjct: 714 PKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK--GEPGFALPGPPGPPGLPGFKGAL 771
Query: 105 QQGVYSRGGYPGAPG--FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA 162
G G+PG PG TG G PG G +P V
Sbjct: 772 --GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGI 829
Query: 163 TATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP 221
L ++ G G G + G P P P + P G G+ G
Sbjct: 830 PGPIGQPGLHGIPGEK----GDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGK 885
Query: 222 SGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYPGQQYLQ 280
+G S M P PGPP +P R GV G LQ
Sbjct: 886 AGASGFPGTKGEMGMMGP------------PGPPGPLGIPGRSGVPG-----LKGDDGLQ 928
Query: 281 GGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGL----HYKPTRSI 336
G P S G+P P P PG P G PG G+ K + +
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGP--PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGL 986
Query: 337 PGYPSSP----LPGNPTPP 351
PG P P PG P PP
Sbjct: 987 PGDPGQPGLSGQPGLPGPP 1005
Score = 43.1 bits (100), Expect = 0.001
Identities = 51/169 (30%), Positives = 58/169 (34%), Gaps = 30/169 (17%)
Query: 703 PFAPLQP--PSVPAPSDYPGQGSSFL----GPGTFPE-SFPPTTPSTPTLA--EFTPGPP 753
P P QP P +P PG L GP FP PP P TP E PGPP
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742
Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
P L LP G L P + G PG PPGP
Sbjct: 743 GFPGPKGEPGFALPGPPGPPGLPGFK---GALGPKGDRGFPG--------PPGP------ 785
Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 862
P L GP G++ + G MGPP + G G P +P
Sbjct: 786 PGRTGLDGLP----GPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Score = 42.7 bits (99), Expect = 0.001
Identities = 94/402 (23%), Positives = 121/402 (30%), Gaps = 92/402 (22%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA- 64
P P LP P DG+ + +P G + G+P P
Sbjct: 101 PGTPGLPGMPGHDGAPGPQGIPGCN------------------GTKGERGFPGSPGFPGL 142
Query: 65 GSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQ----QGVYSRGGYPG--AP 118
P G +PG+ G ++ G + N GY QG+ G PG P
Sbjct: 143 QGPPGPPGIPGMKGEPGSIIMSSLPGPKG------NPGYPGPPGIQGLPGPTGIPGPIGP 196
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G G PG GLP +F + Q++
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISE---QKRPIDV 253
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMN-----PTGIGGVMGPSGLSPLAMNPTR 233
Q G G G RGP P G+ P G G G G P +
Sbjct: 254 EFQKGDQGLP-----------GDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGK 302
Query: 234 AA--------GMT--PLYAGQ--------RLPQHGYPGPPQAQPLPRQGVKRTYSEV--- 272
G+ P Y G+ + G PGPP +PR G T E
Sbjct: 303 DGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPP-GLVIPRPGTGITIGEKGNI 361
Query: 273 -YPGQQYLQGGQYAPSTAQFAPSPGQP------PAPSPSYPGHRLPLQQGMTQSLSVPGP 325
PG +G + P PG P P P +PG R +S+PGP
Sbjct: 362 GLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGP 421
Query: 326 TGLHYKPTRSIPGYPSSPLPGNPT-----------PPMTPSS 356
GL +P PG P P P P PP P S
Sbjct: 422 PGLDGQP--GAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGS 461
Score = 42.7 bits (99), Expect = 0.001
Identities = 63/219 (28%), Positives = 71/219 (32%), Gaps = 35/219 (15%)
Query: 694 IAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPG 751
I+++G P P P +P PG S PG P P L F TPG
Sbjct: 1070 ISSIGLPGLP-GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG 1128
Query: 752 PPPISYQSDIPSSL-LTSEKSTAC---LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP 807
PP S P + L E P Q P G G PG G P P
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-PAGQKGEPGQP 1187
Query: 808 QLHHSNPP--PASRQSLGQASL----------GPTGELAFSPATGVMGPPSMSGAGEAPE 855
+ PP P G L GP GE F GV GPP G +P
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG---SPG 1244
Query: 856 PALD------------LLPELTNPDELLSYLGPPDLPTN 882
PAL+ P T L GPP LP N
Sbjct: 1245 PALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGN 1283
Score = 42.0 bits (97), Expect = 0.003
Identities = 52/193 (26%), Positives = 63/193 (32%), Gaps = 42/193 (21%)
Query: 696 ALGPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP 753
A GP P P P P P PG +F PG + +P P L PG P
Sbjct: 522 ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF--PGMKGDKGELGSPGAPGL----PGLP 575
Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
Q +P L K P + G P NPG PGL
Sbjct: 576 GTPGQDGLPG--LPGPKGE---PGGITFKGERGPPGNPGLPGL----------------- 613
Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSY 873
P + +G GP G + GV G P G P P D P + ++
Sbjct: 614 --PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPG---IPGPKGD-------PGQTITQ 661
Query: 874 LGPPDLPTNNNDD 886
G P LP N D
Sbjct: 662 PGKPGLPGNPGRD 674
Score = 41.6 bits (96), Expect = 0.003
Identities = 55/206 (26%), Positives = 71/206 (34%), Gaps = 28/206 (13%)
Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPES--FPPTTPSTPTLAEFTPGPPPIS 756
PGA P+ PP P PG+ + PGT E P P P G P +
Sbjct: 868 PGAP--GPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 757 Y------QSDIPSSLLTSEKSTACLPSQMAPAGHLDPT--------HNPGTPGLHTSNLG 802
Q +P T EK + P P G +DP PG PG+ +
Sbjct: 923 GDDGLQGQPGLPGP--TGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI--PGVS 978
Query: 803 APPGPQLHHSNP--PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA-GEAPEPALD 859
P G Q +P P S Q GP G G++GPP + G G+ P
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQ 1038
Query: 860 LLPELTNPDELLSYLGPPDLPTNNND 885
+ P + G P LP D
Sbjct: 1039 GVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Score = 40.0 bits (92), Expect = 0.010
Identities = 53/200 (26%), Positives = 62/200 (31%), Gaps = 33/200 (16%)
Query: 699 PGAAPFAPLQPP-----------------SVPAPSDYPGQGSSFLGPGTFPESFPPTTPS 741
PGAA P PP S+P P GQ + PG + P PS
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPS 447
Query: 742 TPTLAEFTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 800
PGPP + + +K C G P PG PG
Sbjct: 448 DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCF--NCIGTGISGPPGQPGLPG----- 500
Query: 801 LGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDL 860
L PPG S P + GQA G TG G G P G+ P L
Sbjct: 501 LPGPPG-----SLGFPGQKGEKGQA--GATGPKGLPGIPGAPGAPGFPGSKGEPGDIL-T 552
Query: 861 LPELTNPDELLSYLGPPDLP 880
P + L G P LP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572
Score = 37.0 bits (84), Expect = 0.082
Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 25/177 (14%)
Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 768
P +P YPG+ G ++ PP P L PG I + +I L
Sbjct: 312 PGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPG---LVIPRPGTGITIGEKGNIGLPGLPG 368
Query: 769 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 828
EK P P PG PG + + PPGP P R G G
Sbjct: 369 EKGERGFPGIQGP---------PGLPGPPGAAVMGPPGPPGF-----PGERGQKGDE--G 412
Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNND 885
P G ++ G+ G P G P PA +P P + + GPP P + D
Sbjct: 413 PPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGPPGSPGD 464
Score = 34.7 bits (78), Expect = 0.41
Identities = 35/143 (24%), Positives = 41/143 (28%), Gaps = 36/143 (25%)
Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTP---TLAEFTPGPPPISYQSDIPSSLL 766
P + PS PG PG PP P + + GPP I Q +
Sbjct: 1338 PGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG--- 1394
Query: 767 TSEKSTACLPSQMAPAGHLDPTHNPGTPGLH----------------------TSNLGAP 804
LP P G PT PG PG + T L P
Sbjct: 1395 --------LPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1446
Query: 805 PGPQLHHSNPPPASRQSLGQASL 827
PGP P P S+ L
Sbjct: 1447 PGPDGLQGPPGPPGTSSVAHGFL 1469
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 58.5 bits (140), Expect = 3e-08
Identities = 77/315 (24%), Positives = 94/315 (29%), Gaps = 62/315 (19%)
Query: 62 GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
GP G P +PG+ G +L P G++ Q G G PG PG
Sbjct: 491 GPPGQPG----LPGLPGPPGSLGFPGQKGEKG-----------QAGATGPKGLPGIPG-- 533
Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
PG G P P T + + L
Sbjct: 534 -----APGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG 588
Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAG---MNPTGIG--GVMGPSGLSPLAMNPTRAAG 236
G +F + G P P +P M P G G G +G G+ +A NP
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNP----- 643
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
G PG P + P Q + + PG G P PG
Sbjct: 644 -------------GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690
Query: 297 QPPAPS----PSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTR----SIPGYPSSP----- 343
P P P PG LP G +PGP G P R PG P P
Sbjct: 691 LPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGE 750
Query: 344 ----LPGNPTPPMTP 354
LPG P PP P
Sbjct: 751 PGFALPGPPGPPGLP 765
Score = 55.8 bits (133), Expect = 2e-07
Identities = 85/332 (25%), Positives = 112/332 (33%), Gaps = 62/332 (18%)
Query: 57 LGNPMGPAGS---PSGSSMMPGVAGGSSALTSPQCLGQQAFA--EGGANKGYVQQGVYSR 111
L P GPAG PS PG G + G+Q +G + G+
Sbjct: 433 LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGP 492
Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
G PG PG G PG LG P A A A
Sbjct: 493 PGQPGLPGLP----GPPGSLGFPGQKGEKGQ-----AGATGPKGLPGIPGAPGAPGFPGS 543
Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
+ + L+ G G S G P P +P G+ G+ GP G
Sbjct: 544 KGEPGDILTFPGMKGDKGELGSP----GAPGLPGLPGTPGQDGLPGLPGPKG-------- 591
Query: 232 TRAAGMTPLYAGQRLP--QHGYPG-PPQAQPLPRQGVKRTYSEVYP-GQQYLQGGQYAPS 287
G+T + G+R P G PG P P+ G + P G++ +QG
Sbjct: 592 -EPGGIT--FKGERGPPGNPGLPGLPGNIGPMGPPG----FGPPGPVGEKGIQG------ 638
Query: 288 TAQFAPSPGQPPAPSP--------SYPGH-RLPLQQGMTQSLSVPGPTGLHYKP------ 332
A +PGQP P P + PG LP G + +PG GL +P
Sbjct: 639 ---VAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIP 695
Query: 333 -TRSIPGYPSSPLPGNPTPPMTPSSSVPYMSP 363
++ PG P LPG P P P P +P
Sbjct: 696 GSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAP 727
Score = 53.1 bits (126), Expect = 1e-06
Identities = 87/343 (25%), Positives = 113/343 (32%), Gaps = 59/343 (17%)
Query: 60 PMGPAGSP-----SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGY 114
P+GP GSP +G+S PG G + P G G +G G
Sbjct: 873 PIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGL--KGDDGLQGQ 930
Query: 115 PGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEK 174
PG PG TG G G GLP + + + L
Sbjct: 931 PGLPG-PTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGD 989
Query: 175 QSQELSQYGAMGAGQSFNSQFLQHGGPRG----PSVPAGMNPTGIGGVMGPSGL-SPLAM 229
Q G S GP+G P P + P G+ G +G G P +
Sbjct: 990 PGQP---------GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGV 1040
Query: 230 -NPTRAAGM-----TPLYAGQR----------LPQHGYPGPPQAQPLP----RQGVKRTY 269
P +G+ +P GQ+ + G PGP LP G+K +
Sbjct: 1041 EGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSV 1100
Query: 270 SEV-YPGQQYLQGGQYAPSTAQFAPSPGQP-------PAPSPSYPGHRLPLQQGMTQSLS 321
+ PG G + P F +PG P P +P PG P+ G
Sbjct: 1101 GDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGG--GHPG 1158
Query: 322 VPGPTGLHYKPTR-SIP------GYPSSPLPGNPTPPMTPSSS 357
PGP G KP + IP G P P GNP PP P S
Sbjct: 1159 QPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLS 1201
Score = 52.4 bits (124), Expect = 2e-06
Identities = 97/360 (26%), Positives = 121/360 (33%), Gaps = 51/360 (14%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P P LP P G + P G + G Q GNP GP G
Sbjct: 1139 PGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG-FGNP-GPPG 1196
Query: 66 SPS-----GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG- 119
P G +PG+ G + L P+ G+ F G+ GV G PG+PG
Sbjct: 1197 LPGLSGQKGDGGLPGIPG-NPGLPGPK--GEPGF------HGF--PGVQGPPGPPGSPGP 1245
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAA-AAVAAAAATATATATATVAALQEKQSQE 178
G G PG G P P + + + L+ Q
Sbjct: 1246 ALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPP 1305
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMT 238
Q G N G P P P P+G+ G GP G P + P G+
Sbjct: 1306 GLQGNPGRPG--LNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEG-EPGLIGPPGPPGL- 1361
Query: 239 PLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP 298
P +GQ + G GPP G+ PGQ L+ G P Q P P P
Sbjct: 1362 PGPSGQSIIIKGDAGPP--------GI--------PGQPGLK-GLPGPQGPQGLPGPTGP 1404
Query: 299 PAPSPSYPGHR-LPLQQGMTQSLSVPGPTGLHYKP-TRSIPGYPS-SPLPGNPTPPMTPS 355
P PG LP G + G GL +P TR + G P L G P PP T S
Sbjct: 1405 PGD----PGRNGLP---GFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSS 1457
Score = 48.1 bits (113), Expect = 4e-05
Identities = 81/334 (24%), Positives = 104/334 (31%), Gaps = 50/334 (14%)
Query: 62 GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYV-QQGVYSRGGYPGAPGF 120
G G P G S PG+ G +P GQ KG + G G G PG
Sbjct: 988 GDPGQP-GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG- 1045
Query: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
+G G PG GLP + + ++ +
Sbjct: 1046 PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGS----VG 1101
Query: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
G G + ++ G P P P P G G+ GP G NP P+
Sbjct: 1102 DPGLPGLPGTPGAK----GQPGLPGFPGTPGPPGPKGISGPPG------NPGLPGEPGPV 1151
Query: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
G G+PG QP P PG++ G P A PGQP
Sbjct: 1152 GGG------GHPG----QPGP------------PGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP----LPGNPTPPMTPSS 356
+P PG LP G +PG G +PG P PG PP P S
Sbjct: 1190 GNPGPPG--LPGLSGQKGDGGLPGIPG-----NPGLPGPKGEPGFHGFPGVQGPPGPPGS 1242
Query: 357 SVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSG 390
P + + P P +P L P G
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPG 1276
Score = 47.8 bits (112), Expect = 5e-05
Identities = 54/206 (26%), Positives = 69/206 (33%), Gaps = 52/206 (25%)
Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQ 758
PG P PP +P P PG PG + PP PGPP
Sbjct: 816 PGIGVQGPPGPPGIPGPIGQPGLHGI---PGEKGDPGPPGLD--------VPGPP----- 859
Query: 759 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN----------LGAPPGPQ 808
E+ + +P P G P +PG PG ++ + PPGP
Sbjct: 860 ---------GERGSPGIPGAPGPIG---PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907
Query: 809 LHHSNPPPASRQSL-------GQASL-GPTGELAFSPATGVMGPPS------MSGAGEAP 854
P + L GQ L GPTGE G+ GPP + GE
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 855 EPALDLLPELTNPDELLSYLGPPDLP 880
EP L +P ++ P G P P
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQP 993
Score = 47.4 bits (111), Expect = 6e-05
Identities = 100/410 (24%), Positives = 123/410 (30%), Gaps = 76/410 (18%)
Query: 6 PMKPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
P +P LP P GS + + Q AT P G + G+ A + G P G
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKG-------LPGIPGAPGAP--GFP-G 542
Query: 63 PAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTT 122
G P PG+ G L SP G Q G+ G G PG T
Sbjct: 543 SKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPG-----QDGLPGLPGPKGEPGGIT 597
Query: 123 -----GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G G PG GLP + A + + Q
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQ 657
Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAM-NPTRAAG 236
++Q G G + G P P +P GI G G G+ + + P G
Sbjct: 658 TITQPGKPGLPGNPGRDG-DVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKG 716
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
G PGPP A P R E PG G + P A P PG
Sbjct: 717 FP-----------GIPGPPGAPGTPG----RIGLEGPPGPPGFPGPKGEPGFALPGP-PG 760
Query: 297 QPPAPS----------------PSYPGHR----LPLQQGMTQSLSVPGPTGLHYKPTRSI 336
P P P PG LP +G PGP G P +
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGV 820
Query: 337 PGYPSSP-------------LPGNPTPPMTPSSSVPYMSPNQEVKSPFLP 373
G P P +PG P P VP P E SP +P
Sbjct: 821 QGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVP--GPPGERGSPGIP 868
Score = 46.6 bits (109), Expect = 1e-04
Identities = 74/299 (24%), Positives = 93/299 (31%), Gaps = 79/299 (26%)
Query: 62 GPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
GP G P G+ +PG+ G A PQ + G N G G+PG+PG
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGA-PGPQGIP-------GCN------GTKGERGFPGSPG 138
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
F G G PG G+P P + +
Sbjct: 139 FP-GLQGPPGPPGIPGMKGEPGSIIMSSLP------------------------------ 167
Query: 180 SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTP 239
G G G P P + PTGI G +GP G P M P G+
Sbjct: 168 ---GPKG----------NPGYPGPPGIQGLPGPTGIPGPIGPPG-PPGLMGPPGPPGLPG 213
Query: 240 LYAGQRL---------PQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQ 290
L + G GPP + + E G Q L G + P
Sbjct: 214 PKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPG 273
Query: 291 FAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP-LPGNP 348
PG PP G +QG PG G + +P IPG P P PG P
Sbjct: 274 IRGPPG-PPGGEKGEKG-----EQGEPGKRGKPGKDGENGQP--GIPGLPGDPGYPGEP 324
Score = 46.2 bits (108), Expect = 1e-04
Identities = 58/192 (30%), Positives = 73/192 (38%), Gaps = 21/192 (10%)
Query: 698 GPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 755
GP P P P P +P PG GT E P +P P L + PGPP I
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPGI 151
Query: 756 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLG--APPGPQ--LHH 811
P S++ S LP G+ P G PG T G PPGP +
Sbjct: 152 PGMKGEPGSIIMSS-----LPGPKGNPGYPGPPGIQGLPG-PTGIPGPIGPPGPPGLMGP 205
Query: 812 SNPP--PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 869
PP P + ++G GP GE G+ GPP G + +D+ E D+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKG---EQGLQGPPGPPGQISEQKRPIDV--EFQKGDQ 260
Query: 870 -LLSYLGPPDLP 880
L GPP P
Sbjct: 261 GLPGDRGPPGPP 272
Score = 45.1 bits (105), Expect = 3e-04
Identities = 97/379 (25%), Positives = 116/379 (30%), Gaps = 68/379 (17%)
Query: 6 PMKPALPPAPHGDGSFAYES---VPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
P KP LP P DG +P Q GS + G+G L P G
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE-PGIPGIG-------LPGPPG 713
Query: 63 PAGSPS--GSSMMPGVAG--------GSSALTSPQCLGQQAFAEGGAN--------KGYV 104
P G P G PG G G P+ G+ FA G KG +
Sbjct: 714 PKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK--GEPGFALPGPPGPPGLPGFKGAL 771
Query: 105 QQGVYSRGGYPGAPG--FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA 162
G G+PG PG TG G PG G +P V
Sbjct: 772 --GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGI 829
Query: 163 TATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP 221
L ++ G G G + G P P P + P G G+ G
Sbjct: 830 PGPIGQPGLHGIPGEK----GDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGK 885
Query: 222 SGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYPGQQYLQ 280
+G S M P PGPP +P R GV G LQ
Sbjct: 886 AGASGFPGTKGEMGMMGP------------PGPPGPLGIPGRSGVPG-----LKGDDGLQ 928
Query: 281 GGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGL----HYKPTRSI 336
G P S G+P P P PG P G PG G+ K + +
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGP--PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGL 986
Query: 337 PGYPSSP----LPGNPTPP 351
PG P P PG P PP
Sbjct: 987 PGDPGQPGLSGQPGLPGPP 1005
Score = 44.3 bits (103), Expect = 5e-04
Identities = 63/219 (28%), Positives = 72/219 (32%), Gaps = 41/219 (18%)
Query: 694 IAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPG 751
I+++G P P P +P PG S PG P P L F TPG
Sbjct: 1070 ISSIGLPGLP-GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG 1128
Query: 752 PPPISYQSDIPSSL-LTSEKSTAC---LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP 807
PP S P + L E P Q P G G PG G P P
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-PAGQKGEPGQP 1187
Query: 808 QLHHSNPP--PASRQSLGQASL----------GPTGELAFSPATGVMGPPSMSGAGEAPE 855
+ PP P G L GP GE F GV GPP G +P
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG---SPG 1244
Query: 856 PALD------------LLPELTNPDELLSYLGPPDLPTN 882
PAL+ P L P+ GPP LP N
Sbjct: 1245 PALEGPKGNPGPQGPPGRPGLPGPE------GPPGLPGN 1277
Score = 43.1 bits (100), Expect = 0.001
Identities = 51/169 (30%), Positives = 58/169 (34%), Gaps = 30/169 (17%)
Query: 703 PFAPLQP--PSVPAPSDYPGQGSSFL----GPGTFPE-SFPPTTPSTPTLA--EFTPGPP 753
P P QP P +P PG L GP FP PP P TP E PGPP
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742
Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
P L LP G L P + G PG PPGP
Sbjct: 743 GFPGPKGEPGFALPGPPGPPGLPGFK---GALGPKGDRGFPG--------PPGP------ 785
Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 862
P L GP G++ + G MGPP + G G P +P
Sbjct: 786 PGRTGLDGLP----GPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Score = 42.7 bits (99), Expect = 0.001
Identities = 94/402 (23%), Positives = 121/402 (30%), Gaps = 92/402 (22%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA- 64
P P LP P DG+ + +P G + G+P P
Sbjct: 101 PGTPGLPGMPGHDGAPGPQGIPGCN------------------GTKGERGFPGSPGFPGL 142
Query: 65 GSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQ----QGVYSRGGYPG--AP 118
P G +PG+ G ++ G + N GY QG+ G PG P
Sbjct: 143 QGPPGPPGIPGMKGEPGSIIMSSLPGPKG------NPGYPGPPGIQGLPGPTGIPGPIGP 196
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G G PG GLP +F + Q++
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISE---QKRPIDV 253
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMN-----PTGIGGVMGPSGLSPLAMNPTR 233
Q G G G RGP P G+ P G G G G P +
Sbjct: 254 EFQKGDQGLP-----------GDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGK 302
Query: 234 AA--------GMT--PLYAGQ--------RLPQHGYPGPPQAQPLPRQGVKRTYSEV--- 272
G+ P Y G+ + G PGPP +PR G T E
Sbjct: 303 DGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPP-GLVIPRPGTGITIGEKGNI 361
Query: 273 -YPGQQYLQGGQYAPSTAQFAPSPGQP------PAPSPSYPGHRLPLQQGMTQSLSVPGP 325
PG +G + P PG P P P +PG R +S+PGP
Sbjct: 362 GLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGP 421
Query: 326 TGLHYKPTRSIPGYPSSPLPGNPT-----------PPMTPSS 356
GL +P PG P P P P PP P S
Sbjct: 422 PGLDGQP--GAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGS 461
Score = 42.0 bits (97), Expect = 0.003
Identities = 52/193 (26%), Positives = 63/193 (32%), Gaps = 42/193 (21%)
Query: 696 ALGPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP 753
A GP P P P P P PG +F PG + +P P L PG P
Sbjct: 522 ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF--PGMKGDKGELGSPGAPGL----PGLP 575
Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
Q +P L K P + G P NPG PGL
Sbjct: 576 GTPGQDGLPG--LPGPKGE---PGGITFKGERGPPGNPGLPGL----------------- 613
Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSY 873
P + +G GP G + GV G P G P P D P + ++
Sbjct: 614 --PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPG---IPGPKGD-------PGQTITQ 661
Query: 874 LGPPDLPTNNNDD 886
G P LP N D
Sbjct: 662 PGKPGLPGNPGRD 674
Score = 41.6 bits (96), Expect = 0.003
Identities = 55/206 (26%), Positives = 71/206 (34%), Gaps = 28/206 (13%)
Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPES--FPPTTPSTPTLAEFTPGPPPIS 756
PGA P+ PP P PG+ + PGT E P P P G P +
Sbjct: 868 PGAP--GPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 757 Y------QSDIPSSLLTSEKSTACLPSQMAPAGHLDPT--------HNPGTPGLHTSNLG 802
Q +P T EK + P P G +DP PG PG+ +
Sbjct: 923 GDDGLQGQPGLPGP--TGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI--PGVS 978
Query: 803 APPGPQLHHSNP--PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA-GEAPEPALD 859
P G Q +P P S Q GP G G++GPP + G G+ P
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQ 1038
Query: 860 LLPELTNPDELLSYLGPPDLPTNNND 885
+ P + G P LP D
Sbjct: 1039 GVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Score = 40.0 bits (92), Expect = 0.010
Identities = 53/200 (26%), Positives = 62/200 (31%), Gaps = 33/200 (16%)
Query: 699 PGAAPFAPLQPP-----------------SVPAPSDYPGQGSSFLGPGTFPESFPPTTPS 741
PGAA P PP S+P P GQ + PG + P PS
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPS 447
Query: 742 TPTLAEFTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 800
PGPP + + +K C G P PG PG
Sbjct: 448 DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCF--NCIGTGISGPPGQPGLPG----- 500
Query: 801 LGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDL 860
L PPG S P + GQA G TG G G P G+ P L
Sbjct: 501 LPGPPG-----SLGFPGQKGEKGQA--GATGPKGLPGIPGAPGAPGFPGSKGEPGDIL-T 552
Query: 861 LPELTNPDELLSYLGPPDLP 880
P + L G P LP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572
Score = 37.0 bits (84), Expect = 0.082
Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 25/177 (14%)
Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 768
P +P YPG+ G ++ PP P L PG I + +I L
Sbjct: 312 PGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPG---LVIPRPGTGITIGEKGNIGLPGLPG 368
Query: 769 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 828
EK P P PG PG + + PPGP P R G G
Sbjct: 369 EKGERGFPGIQGP---------PGLPGPPGAAVMGPPGPPGF-----PGERGQKGDE--G 412
Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNND 885
P G ++ G+ G P G P PA +P P + + GPP P + D
Sbjct: 413 PPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGPPGSPGD 464
Score = 34.7 bits (78), Expect = 0.41
Identities = 35/143 (24%), Positives = 41/143 (28%), Gaps = 36/143 (25%)
Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTP---TLAEFTPGPPPISYQSDIPSSLL 766
P + PS PG PG PP P + + GPP I Q +
Sbjct: 1332 PGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG--- 1388
Query: 767 TSEKSTACLPSQMAPAGHLDPTHNPGTPGLH----------------------TSNLGAP 804
LP P G PT PG PG + T L P
Sbjct: 1389 --------LPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1440
Query: 805 PGPQLHHSNPPPASRQSLGQASL 827
PGP P P S+ L
Sbjct: 1441 PGPDGLQGPPGPPGTSSVAHGFL 1463
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 58.5 bits (140), Expect = 3e-08
Identities = 77/315 (24%), Positives = 94/315 (29%), Gaps = 62/315 (19%)
Query: 62 GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
GP G P +PG+ G +L P G++ Q G G PG PG
Sbjct: 491 GPPGQPG----LPGLPGPPGSLGFPGQKGEKG-----------QAGATGPKGLPGIPG-- 533
Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
PG G P P T + + L
Sbjct: 534 -----APGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG 588
Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAG---MNPTGIG--GVMGPSGLSPLAMNPTRAAG 236
G +F + G P P +P M P G G G +G G+ +A NP
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNP----- 643
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
G PG P + P Q + + PG G P PG
Sbjct: 644 -------------GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690
Query: 297 QPPAPS----PSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTR----SIPGYPSSP----- 343
P P P PG LP G +PGP G P R PG P P
Sbjct: 691 LPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGE 750
Query: 344 ----LPGNPTPPMTP 354
LPG P PP P
Sbjct: 751 PGFALPGPPGPPGLP 765
Score = 55.8 bits (133), Expect = 2e-07
Identities = 85/332 (25%), Positives = 112/332 (33%), Gaps = 62/332 (18%)
Query: 57 LGNPMGPAGS---PSGSSMMPGVAGGSSALTSPQCLGQQAFA--EGGANKGYVQQGVYSR 111
L P GPAG PS PG G + G+Q +G + G+
Sbjct: 433 LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGP 492
Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
G PG PG G PG LG P A A A
Sbjct: 493 PGQPGLPGLP----GPPGSLGFPGQKGEKGQ-----AGATGPKGLPGIPGAPGAPGFPGS 543
Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
+ + L+ G G S G P P +P G+ G+ GP G
Sbjct: 544 KGEPGDILTFPGMKGDKGELGSP----GAPGLPGLPGTPGQDGLPGLPGPKG-------- 591
Query: 232 TRAAGMTPLYAGQRLP--QHGYPG-PPQAQPLPRQGVKRTYSEVYP-GQQYLQGGQYAPS 287
G+T + G+R P G PG P P+ G + P G++ +QG
Sbjct: 592 -EPGGIT--FKGERGPPGNPGLPGLPGNIGPMGPPG----FGPPGPVGEKGIQG------ 638
Query: 288 TAQFAPSPGQPPAPSP--------SYPGH-RLPLQQGMTQSLSVPGPTGLHYKP------ 332
A +PGQP P P + PG LP G + +PG GL +P
Sbjct: 639 ---VAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIP 695
Query: 333 -TRSIPGYPSSPLPGNPTPPMTPSSSVPYMSP 363
++ PG P LPG P P P P +P
Sbjct: 696 GSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAP 727
Score = 48.9 bits (115), Expect = 2e-05
Identities = 82/335 (24%), Positives = 105/335 (31%), Gaps = 53/335 (15%)
Query: 62 GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYV-QQGVYSRGGYPGAPGF 120
G G P G S PG+ G +P GQ KG + G G G PG
Sbjct: 988 GDPGQP-GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG- 1045
Query: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
+G G PG GLP + + ++ +
Sbjct: 1046 PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGS----VG 1101
Query: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
G G + ++ G P P P P G G+ GP G NP P+
Sbjct: 1102 DPGLPGLPGTPGAK----GQPGLPGFPGTPGPPGPKGISGPPG------NPGLPGEPGPV 1151
Query: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
G G+PG QP P PG++ G P A PGQP
Sbjct: 1152 GGG------GHPG----QPGP------------PGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP----LPGNPTPPMTPSS 356
+P PG LP G +PG G +PG P PG PP P S
Sbjct: 1190 GNPGPPG--LPGLSGQKGDGGLPGIPG-----NPGLPGPKGEPGFHGFPGVQGPPGPPGS 1242
Query: 357 SVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGP 391
P + + P P +P L P GP
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGFQGL---PGPEGP 1274
Score = 48.5 bits (114), Expect = 3e-05
Identities = 98/368 (26%), Positives = 121/368 (32%), Gaps = 64/368 (17%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P P LP P G + P G + G Q GNP GP G
Sbjct: 1139 PGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG-FGNP-GPPG 1196
Query: 66 SPS-----GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
P G +PG+ G + L P+ G+ F G+ GV G PG+PG
Sbjct: 1197 LPGLSGQKGDGGLPGIPG-NPGLPGPK--GEPGF------HGF--PGVQGPPGPPGSPGP 1245
Query: 121 TT----------GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAA 170
G G PG GLP P + +
Sbjct: 1246 ALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLP-----GNGGIKGEKGNPGQPGLPGLPG 1300
Query: 171 LQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMN 230
L+ Q Q G N G P P P P+G+ G GP G P +
Sbjct: 1301 LKGDQGPPGLQGNPGRPG--LNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEG-EPGLIG 1357
Query: 231 PTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQ 290
P G+ P +GQ + G GPP G+ PGQ L+ G P Q
Sbjct: 1358 PPGPPGL-PGPSGQSIIIKGDAGPP--------GI--------PGQPGLK-GLPGPQGPQ 1399
Query: 291 FAPSPGQPPAPSPSYPGHR-LPLQQGMTQSLSVPGPTGLHYKP-TRSIPGYPS-SPLPGN 347
P P PP PG LP G + G GL +P TR + G P L G
Sbjct: 1400 GLPGPTGPPGD----PGRNGLP---GFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGP 1452
Query: 348 PTPPMTPS 355
P PP T S
Sbjct: 1453 PGPPGTSS 1460
Score = 47.8 bits (112), Expect = 5e-05
Identities = 54/206 (26%), Positives = 69/206 (33%), Gaps = 52/206 (25%)
Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQ 758
PG P PP +P P PG PG + PP PGPP
Sbjct: 816 PGIGVQGPPGPPGIPGPIGQPGLHGI---PGEKGDPGPPGLD--------VPGPP----- 859
Query: 759 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN----------LGAPPGPQ 808
E+ + +P P G P +PG PG ++ + PPGP
Sbjct: 860 ---------GERGSPGIPGAPGPIG---PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907
Query: 809 LHHSNPPPASRQSL-------GQASL-GPTGELAFSPATGVMGPPS------MSGAGEAP 854
P + L GQ L GPTGE G+ GPP + GE
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 855 EPALDLLPELTNPDELLSYLGPPDLP 880
EP L +P ++ P G P P
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQP 993
Score = 47.4 bits (111), Expect = 6e-05
Identities = 100/410 (24%), Positives = 123/410 (30%), Gaps = 76/410 (18%)
Query: 6 PMKPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
P +P LP P GS + + Q AT P G + G+ A + G P G
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKG-------LPGIPGAPGAP--GFP-G 542
Query: 63 PAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTT 122
G P PG+ G L SP G Q G+ G G PG T
Sbjct: 543 SKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPG-----QDGLPGLPGPKGEPGGIT 597
Query: 123 -----GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G G PG GLP + A + + Q
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQ 657
Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAM-NPTRAAG 236
++Q G G + G P P +P GI G G G+ + + P G
Sbjct: 658 TITQPGKPGLPGNPGRDG-DVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKG 716
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
G PGPP A P R E PG G + P A P PG
Sbjct: 717 FP-----------GIPGPPGAPGTPG----RIGLEGPPGPPGFPGPKGEPGFALPGP-PG 760
Query: 297 QPPAPS----------------PSYPGHR----LPLQQGMTQSLSVPGPTGLHYKPTRSI 336
P P P PG LP +G PGP G P +
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGV 820
Query: 337 PGYPSSP-------------LPGNPTPPMTPSSSVPYMSPNQEVKSPFLP 373
G P P +PG P P VP P E SP +P
Sbjct: 821 QGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVP--GPPGERGSPGIP 868
Score = 46.6 bits (109), Expect = 1e-04
Identities = 74/299 (24%), Positives = 93/299 (31%), Gaps = 79/299 (26%)
Query: 62 GPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
GP G P G+ +PG+ G A PQ + G N G G+PG+PG
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGA-PGPQGIP-------GCN------GTKGERGFPGSPG 138
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
F G G PG G+P P + +
Sbjct: 139 FP-GLQGPPGPPGIPGMKGEPGSIIMSSLP------------------------------ 167
Query: 180 SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTP 239
G G G P P + PTGI G +GP G P M P G+
Sbjct: 168 ---GPKG----------NPGYPGPPGIQGLPGPTGIPGPIGPPG-PPGLMGPPGPPGLPG 213
Query: 240 LYAGQRL---------PQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQ 290
L + G GPP + + E G Q L G + P
Sbjct: 214 PKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPG 273
Query: 291 FAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSP-LPGNP 348
PG PP G +QG PG G + +P IPG P P PG P
Sbjct: 274 IRGPPG-PPGGEKGEKG-----EQGEPGKRGKPGKDGENGQP--GIPGLPGDPGYPGEP 324
Score = 46.2 bits (108), Expect = 1e-04
Identities = 58/192 (30%), Positives = 73/192 (38%), Gaps = 21/192 (10%)
Query: 698 GPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 755
GP P P P P +P PG GT E P +P P L + PGPP I
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPGI 151
Query: 756 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLG--APPGPQ--LHH 811
P S++ S LP G+ P G PG T G PPGP +
Sbjct: 152 PGMKGEPGSIIMSS-----LPGPKGNPGYPGPPGIQGLPG-PTGIPGPIGPPGPPGLMGP 205
Query: 812 SNPP--PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 869
PP P + ++G GP GE G+ GPP G + +D+ E D+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKG---EQGLQGPPGPPGQISEQKRPIDV--EFQKGDQ 260
Query: 870 -LLSYLGPPDLP 880
L GPP P
Sbjct: 261 GLPGDRGPPGPP 272
Score = 45.1 bits (105), Expect = 3e-04
Identities = 97/379 (25%), Positives = 116/379 (30%), Gaps = 68/379 (17%)
Query: 6 PMKPALPPAPHGDGSFAYES---VPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
P KP LP P DG +P Q GS + G+G L P G
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE-PGIPGIG-------LPGPPG 713
Query: 63 PAGSPS--GSSMMPGVAG--------GSSALTSPQCLGQQAFAEGGAN--------KGYV 104
P G P G PG G G P+ G+ FA G KG +
Sbjct: 714 PKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK--GEPGFALPGPPGPPGLPGFKGAL 771
Query: 105 QQGVYSRGGYPGAPG--FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA 162
G G+PG PG TG G PG G +P V
Sbjct: 772 --GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGI 829
Query: 163 TATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP 221
L ++ G G G + G P P P + P G G+ G
Sbjct: 830 PGPIGQPGLHGIPGEK----GDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGK 885
Query: 222 SGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYPGQQYLQ 280
+G S M P PGPP +P R GV G LQ
Sbjct: 886 AGASGFPGTKGEMGMMGP------------PGPPGPLGIPGRSGVPG-----LKGDDGLQ 928
Query: 281 GGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGL----HYKPTRSI 336
G P S G+P P P PG P G PG G+ K + +
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGP--PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGL 986
Query: 337 PGYPSSP----LPGNPTPP 351
PG P P PG P PP
Sbjct: 987 PGDPGQPGLSGQPGLPGPP 1005
Score = 43.5 bits (101), Expect = 9e-04
Identities = 56/198 (28%), Positives = 65/198 (32%), Gaps = 34/198 (17%)
Query: 698 GPGAAPFAPLQP--------PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFT 749
GP P P +P P P P G+ PG + P P
Sbjct: 1137 GPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGN----- 1191
Query: 750 PGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQL 809
PGPP +P L+ +K LP G P PG G + PPGP
Sbjct: 1192 PGPP------GLPG--LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGF--PGVQGPPGPP- 1240
Query: 810 HHSNPPPASRQSLGQAS-LGPTGELAFSPATGVMGPPSMSG----AGEAPEPALDLLPEL 864
+P PA G GP G F G GPP + G GE P LP L
Sbjct: 1241 --GSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGL 1298
Query: 865 TNPDELLSYLGPPDLPTN 882
L GPP L N
Sbjct: 1299 PG---LKGDQGPPGLQGN 1313
Score = 43.1 bits (100), Expect = 0.001
Identities = 51/169 (30%), Positives = 58/169 (34%), Gaps = 30/169 (17%)
Query: 703 PFAPLQP--PSVPAPSDYPGQGSSFL----GPGTFPE-SFPPTTPSTPTLA--EFTPGPP 753
P P QP P +P PG L GP FP PP P TP E PGPP
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742
Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
P L LP G L P + G PG PPGP
Sbjct: 743 GFPGPKGEPGFALPGPPGPPGLPGFK---GALGPKGDRGFPG--------PPGP------ 785
Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 862
P L GP G++ + G MGPP + G G P +P
Sbjct: 786 PGRTGLDGLP----GPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Score = 42.7 bits (99), Expect = 0.001
Identities = 94/402 (23%), Positives = 121/402 (30%), Gaps = 92/402 (22%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA- 64
P P LP P DG+ + +P G + G+P P
Sbjct: 101 PGTPGLPGMPGHDGAPGPQGIPGCN------------------GTKGERGFPGSPGFPGL 142
Query: 65 GSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQ----QGVYSRGGYPG--AP 118
P G +PG+ G ++ G + N GY QG+ G PG P
Sbjct: 143 QGPPGPPGIPGMKGEPGSIIMSSLPGPKG------NPGYPGPPGIQGLPGPTGIPGPIGP 196
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G G PG GLP +F + Q++
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISE---QKRPIDV 253
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMN-----PTGIGGVMGPSGLSPLAMNPTR 233
Q G G G RGP P G+ P G G G G P +
Sbjct: 254 EFQKGDQGLP-----------GDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGK 302
Query: 234 AA--------GMT--PLYAGQ--------RLPQHGYPGPPQAQPLPRQGVKRTYSEV--- 272
G+ P Y G+ + G PGPP +PR G T E
Sbjct: 303 DGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPP-GLVIPRPGTGITIGEKGNI 361
Query: 273 -YPGQQYLQGGQYAPSTAQFAPSPGQP------PAPSPSYPGHRLPLQQGMTQSLSVPGP 325
PG +G + P PG P P P +PG R +S+PGP
Sbjct: 362 GLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGP 421
Query: 326 TGLHYKPTRSIPGYPSSPLPGNPT-----------PPMTPSS 356
GL +P PG P P P P PP P S
Sbjct: 422 PGLDGQP--GAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGS 461
Score = 42.4 bits (98), Expect = 0.002
Identities = 54/184 (29%), Positives = 62/184 (33%), Gaps = 23/184 (12%)
Query: 694 IAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPG 751
I+++G P P P +P PG S PG P P L F TPG
Sbjct: 1070 ISSIGLPGLP-GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG 1128
Query: 752 PPPISYQSDIPSSL-LTSEKSTAC---LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP 807
PP S P + L E P Q P G G PG G P P
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-PAGQKGEPGQP 1187
Query: 808 QLHHSNPP--PASRQSLGQASL----------GPTGELAFSPATGVMGPPSMSGAGEAPE 855
+ PP P G L GP GE F GV GPP G +P
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG---SPG 1244
Query: 856 PALD 859
PAL+
Sbjct: 1245 PALE 1248
Score = 42.0 bits (97), Expect = 0.003
Identities = 52/193 (26%), Positives = 63/193 (32%), Gaps = 42/193 (21%)
Query: 696 ALGPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP 753
A GP P P P P P PG +F PG + +P P L PG P
Sbjct: 522 ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF--PGMKGDKGELGSPGAPGL----PGLP 575
Query: 754 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 813
Q +P L K P + G P NPG PGL
Sbjct: 576 GTPGQDGLPG--LPGPKGE---PGGITFKGERGPPGNPGLPGL----------------- 613
Query: 814 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSY 873
P + +G GP G + GV G P G P P D P + ++
Sbjct: 614 --PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPG---IPGPKGD-------PGQTITQ 661
Query: 874 LGPPDLPTNNNDD 886
G P LP N D
Sbjct: 662 PGKPGLPGNPGRD 674
Score = 41.6 bits (96), Expect = 0.003
Identities = 55/206 (26%), Positives = 71/206 (34%), Gaps = 28/206 (13%)
Query: 699 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPES--FPPTTPSTPTLAEFTPGPPPIS 756
PGA P+ PP P PG+ + PGT E P P P G P +
Sbjct: 868 PGAP--GPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 757 Y------QSDIPSSLLTSEKSTACLPSQMAPAGHLDPT--------HNPGTPGLHTSNLG 802
Q +P T EK + P P G +DP PG PG+ +
Sbjct: 923 GDDGLQGQPGLPGP--TGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI--PGVS 978
Query: 803 APPGPQLHHSNP--PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA-GEAPEPALD 859
P G Q +P P S Q GP G G++GPP + G G+ P
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQ 1038
Query: 860 LLPELTNPDELLSYLGPPDLPTNNND 885
+ P + G P LP D
Sbjct: 1039 GVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Score = 40.0 bits (92), Expect = 0.010
Identities = 53/200 (26%), Positives = 62/200 (31%), Gaps = 33/200 (16%)
Query: 699 PGAAPFAPLQPP-----------------SVPAPSDYPGQGSSFLGPGTFPESFPPTTPS 741
PGAA P PP S+P P GQ + PG + P PS
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPS 447
Query: 742 TPTLAEFTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 800
PGPP + + +K C G P PG PG
Sbjct: 448 DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCF--NCIGTGISGPPGQPGLPG----- 500
Query: 801 LGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDL 860
L PPG S P + GQA G TG G G P G+ P L
Sbjct: 501 LPGPPG-----SLGFPGQKGEKGQA--GATGPKGLPGIPGAPGAPGFPGSKGEPGDIL-T 552
Query: 861 LPELTNPDELLSYLGPPDLP 880
P + L G P LP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572
Score = 37.0 bits (84), Expect = 0.082
Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 25/177 (14%)
Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 768
P +P YPG+ G ++ PP P L PG I + +I L
Sbjct: 312 PGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPG---LVIPRPGTGITIGEKGNIGLPGLPG 368
Query: 769 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 828
EK P P PG PG + + PPGP P R G G
Sbjct: 369 EKGERGFPGIQGP---------PGLPGPPGAAVMGPPGPPGF-----PGERGQKGDE--G 412
Query: 829 PTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNND 885
P G ++ G+ G P G P PA +P P + + GPP P + D
Sbjct: 413 PPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGPPGSPGD 464
Score = 34.7 bits (78), Expect = 0.41
Identities = 35/143 (24%), Positives = 41/143 (28%), Gaps = 36/143 (25%)
Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTP---TLAEFTPGPPPISYQSDIPSSLL 766
P + PS PG PG PP P + + GPP I Q +
Sbjct: 1335 PGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG--- 1391
Query: 767 TSEKSTACLPSQMAPAGHLDPTHNPGTPGLH----------------------TSNLGAP 804
LP P G PT PG PG + T L P
Sbjct: 1392 --------LPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1443
Query: 805 PGPQLHHSNPPPASRQSLGQASL 827
PGP P P S+ L
Sbjct: 1444 PGPDGLQGPPGPPGTSSVAHGFL 1466
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 58.2 bits (139), Expect = 3e-08
Identities = 69/255 (27%), Positives = 85/255 (33%), Gaps = 37/255 (14%)
Query: 145 TQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGP 204
+Q AA+AA A T A A S GA GAG + ++ P P
Sbjct: 31 SQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPP 90
Query: 205 SVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQG 264
PAG G GG P SP P AG P A R P G G P+P
Sbjct: 91 --PAGRARPGGGGPQRPGPPSP--RRPLVPAGPAPPAAKLRPPPEGSAG--SCAPVPAAA 144
Query: 265 VKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVP- 323
E P G A A+ P PG P P P PG P G Q+L+
Sbjct: 145 AVAAGPEPAPAGPAKPAGP-AALAARAGPGPGPGPGPGPG-PGPGKPAGPGAAQTLNGSA 202
Query: 324 ------------------GPTGLHYKPTRSIPGY----------PSSPLPGNPTPPMTPS 355
GP L P + PG + P P P+PP P+
Sbjct: 203 ALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPA 262
Query: 356 SSVPYMSPNQEVKSP 370
+ P +P +P
Sbjct: 263 PAAPAAAPPPPPPAP 277
Score = 55.5 bits (132), Expect = 2e-07
Identities = 63/237 (26%), Positives = 81/237 (34%), Gaps = 49/237 (20%)
Query: 658 PVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSD 717
P P ++ P+G A C V A + A GP AP P +P A +
Sbjct: 119 PAPPAAKLRPPPEGSA-GSCAPVPAAAAV---------AAGPEPAPAGPAKPAGPAALAA 168
Query: 718 YPGQGSSFLGPGTFPESFP-PTTPSTPTLAEFTPGP-----------PPISYQSDIPSSL 765
G G GPG P P P P+ P A+ G P +S ++ P++L
Sbjct: 169 RAGPGP---GPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAAL 225
Query: 766 LTSEKSTA-------------------CLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPG 806
L K A PS A P P P + L PPG
Sbjct: 226 LPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG 285
Query: 807 -----PQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPAL 858
P + PPPA+ Q+ G A P A GV G P A AP P +
Sbjct: 286 HPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGV 342
Score = 42.0 bits (97), Expect = 0.003
Identities = 68/277 (24%), Positives = 93/277 (33%), Gaps = 47/277 (16%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
P P +P+ + PG G T+ + A A+ G + G + GG G G
Sbjct: 270 PPPPPPAPATLARPPGHPAGPP--TAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSG 327
Query: 120 FTTGYAGGPGGLGL---PSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQS 176
GPG P A QAA AA AA+ +TA + V
Sbjct: 328 -----QPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGP----- 377
Query: 177 QELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAG 236
+ GA+ + + P P P G+ G V +P A A
Sbjct: 378 ---TMQGALPSPAAVP--------PPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRAT 426
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYL--QGGQ--------YAP 286
+TP RLPQ PPQ P Q ++ PG + + GQ A
Sbjct: 427 LTPTVLAPRLPQ-----PPQ-NPTNIQNF-----QLPPGMVLVRSENGQLLMIPQQALAQ 475
Query: 287 STAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVP 323
AQ P AP P+ P P+Q Q+ P
Sbjct: 476 MQAQAHAQPQTTMAPRPATPTSAPPVQISTVQAPGTP 512
Score = 38.5 bits (88), Expect = 0.028
Identities = 69/296 (23%), Positives = 92/296 (31%), Gaps = 60/296 (20%)
Query: 56 VLGNPMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYP 115
V G+P G AG+ + G A P G+ GG + P
Sbjct: 63 VSGSPAGAAGAGPAAP----AEGAPGAAPEPPPAGRARPGGGGPQR-------------P 105
Query: 116 GAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
G P P G P+ RP + + + A AA AA A A +
Sbjct: 106 GPPSPRRPLV--PAGPAPPAAKLRPPPEGSAGSCAPVPAA-AAVAAGPEPAPAGPAKPAG 162
Query: 176 SQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAA 235
L+ G G GP P P G G +G + L + AA
Sbjct: 163 PAALAARAGPGPGP----------GPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAA 212
Query: 236 GMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSP 295
L GP PLP+ T + P G P+ A APSP
Sbjct: 213 PAVSLVNN---------GPAALLPLPKPAAPGTVIQTPP----FVGAAAPPAPA--APSP 257
Query: 296 GQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPP 351
P AP+P+ P P +L+ P PG+P+ P P P
Sbjct: 258 --PAAPAPAAPAAAPPPPPPAPATLARP-------------PGHPAGPPTAAPAVP 298
Score = 38.5 bits (88), Expect = 0.028
Identities = 46/173 (26%), Positives = 60/173 (34%), Gaps = 16/173 (9%)
Query: 689 SVMEMIAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF 748
S ++ A P A A P S A G + G P + PP P TPT
Sbjct: 346 SPKRVVQAAPPAAQTLAASGPASTAASMVI---GPTMQGALPSPAAVPPPAPGTPTGLPK 402
Query: 749 TPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ 808
S P++ + ++T P+ +AP P NP + N PPG
Sbjct: 403 GAAGAVTQSLSRTPTATTSGIRATLT-PTVLAPRLP-QPPQNP----TNIQNFQLPPGMV 456
Query: 809 LHHSN-------PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAP 854
L S P A Q QA P +A PAT PP +AP
Sbjct: 457 LVRSENGQLLMIPQQALAQMQAQAHAQPQTTMAPRPATPTSAPPVQISTVQAP 509
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 57.8 bits (138), Expect = 4e-08
Identities = 70/236 (29%), Positives = 92/236 (38%), Gaps = 45/236 (19%)
Query: 656 PVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAAL----GPGAAPF------- 704
P P+ P ++ P GPA + VS A + +P V+ + GPGA PF
Sbjct: 269 PPPLPPSNNLPAHP-GPASQP--PVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLLS 325
Query: 705 --APLQPPSVPAPSDYPGQG----------SSFLGPGTFPESFPPTT--------PSTPT 744
A Q P +P PS G+ SS L P PPT P TP
Sbjct: 326 AAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQTPR 385
Query: 745 LAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAG--HLDPTHNPGTPGLHTSNLG 802
+ P P+ +P E S LPS ++ G P+H+ G+ L S+
Sbjct: 386 RSR-PRAPAPVPQPFSLP------EPSQPILPSVLSLLGLPTPGPSHSDGSFNLLGSDAH 438
Query: 803 APPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPAL 858
PP P L S PP R + Q SL T + S G PP+ S A P P L
Sbjct: 439 LPPPPTL-SSGSPPQPRHPI-QPSLPGTTSGSLSSVPGAPAPPAASKAPVVPSPVL 492
Score = 44.3 bits (103), Expect = 5e-04
Identities = 59/267 (22%), Positives = 91/267 (34%), Gaps = 45/267 (16%)
Query: 669 PDGPALKRC--RTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPG---QGS 723
P+ P++ + P + P + + + + G + F P PAP P
Sbjct: 166 PEPPSVSQAFPTLAGPGGLFPPRLADPVPSGGSSSPRFLPRGNAPSPAPPPPPAISLNAP 225
Query: 724 SFLGPGTFPESFPPT---TPSTPTLAEFTPGPPPISYQSDI-----------------PS 763
S+ S P+ +P P + P PP+ + SD P+
Sbjct: 226 SYNWGAALRSSLVPSDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHPGPA 285
Query: 764 SLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQ--- 820
S +T LP + P G PG P S+L + H PPP++ Q
Sbjct: 286 SQPPVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPSTLQGRR 345
Query: 821 -------SLGQASLGPTGELAFSPAT--------GVMGPPSMSGAGEAPEPALDLLPELT 865
+ +SL P+ P T G P AP P LPE +
Sbjct: 346 PRAQAPSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQTPRRSRPRAPAPVPQPFSLPEPS 405
Query: 866 NP--DELLSYLGPPDLPTNNNDDLLSL 890
P +LS LG P +++D +L
Sbjct: 406 QPILPSVLSLLGLPTPGPSHSDGSFNL 432
Score = 42.4 bits (98), Expect = 0.002
Identities = 61/222 (27%), Positives = 81/222 (36%), Gaps = 55/222 (24%)
Query: 677 CRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFP 736
C SP P + ++ P A P P VP + G GPG+ P P
Sbjct: 121 CSHSSPGEGASPQMFHTVSPGPPSARP-----PCRVPPTTPLNG------GPGSLPPEPP 169
Query: 737 PTTPSTPTLAEFTPG---PPPISYQSDIPSSLLTSEKSTACLPSQMAPA---------GH 784
+ + PTLA PG PP ++ +PS S LP AP+
Sbjct: 170 SVSQAFPTLA--GPGGLFPPRLA--DPVPSG---GSSSPRFLPRGNAPSPAPPPPPAISL 222
Query: 785 LDPTHNPGT---PGLHTSNLGAPPGPQLHHS--------------NPPPASRQSLGQASL 827
P++N G L S+LG+PP P S PPP + A
Sbjct: 223 NAPSYNWGAALRSSLVPSDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHP 282
Query: 828 GPTGELAFSPATG----VMGP----PSMSGAGEAPEPALDLL 861
GP + S AT V+GP P++ G G P A LL
Sbjct: 283 GPASQPPVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLL 324
Score = 40.8 bits (94), Expect = 0.006
Identities = 65/233 (27%), Positives = 84/233 (36%), Gaps = 47/233 (20%)
Query: 682 PAHVLMPSVMEMIAALGPGAAPF----------APLQPPSVPAPSDYPGQGSSFLGPGTF 731
P+ ++PSV+ ++ PG + A L PP + S P Q + P
Sbjct: 404 PSQPILPSVLSLLGLPTPGPSHSDGSFNLLGSDAHLPPPPTLS-SGSPPQPRHPIQP--- 459
Query: 732 PESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEK-------STACLPSQMAPAGH 784
S P TT + + P PP S +PS +L S AC P G
Sbjct: 460 --SLPGTTSGSLSSVPGAPAPPAASKAPVVPSPVLQSPSEGLGMGAGPAC-PLPPLAGGE 516
Query: 785 LDPTHNP---------GTPGLHTSNLGAPPGP-QLHHSNPPPASRQSLGQASLGPTGE-- 832
P +P G PG+ LGA P P L P P SL G G+
Sbjct: 517 AFPFPSPEQGLALSGAGFPGM----LGALPLPLSLGQPPPSPLLNHSLFGVLTGGGGQPP 572
Query: 833 -LAFSPATGVMGPPSMSGAGEAPEPAL-DLLPELTNPDELLSYLGPPDLPTNN 883
P G GPP G E P + LLP P +LL PP P +N
Sbjct: 573 PEPLLPPPGGPGPPLAPGEPEGPSLLVASLLP--PPPSDLLP---PPSAPPSN 620
Score = 36.6 bits (83), Expect = 0.11
Identities = 102/443 (23%), Positives = 141/443 (31%), Gaps = 99/443 (22%)
Query: 6 PMKPALP----------PAP-HGDGSFAY-------ESVPWQQSATQPAGSLSVVTTVWG 47
P +P LP P P H DGSF P S + P + ++ G
Sbjct: 404 PSQPILPSVLSLLGLPTPGPSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPG 463
Query: 48 VGNATQSQVLGNPMGPAGS-----PSGSSMMPGVA---GGSSALTSPQCLGQQAFAEGGA 99
+ + S V G P PA S PS P G A P G +AF
Sbjct: 464 TTSGSLSSVPGAPAPPAASKAPVVPSPVLQSPSEGLGMGAGPACPLPPLAGGEAFPFPSP 523
Query: 100 NKGYVQQGV------------YSRGGYPGAP-------GFTTGYAGGP---------GGL 131
+G G S G P +P G TG G P GG
Sbjct: 524 EQGLALSGAGFPGMLGALPLPLSLGQPPPSPLLNHSLFGVLTGGGGQPPPEPLLPPPGGP 583
Query: 132 GLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSF 191
G P P + A+ + + +A + L L+ G G+
Sbjct: 584 GPPLAPGEP--EGPSLLVASLLPPPPSDLLPPPSAPPSNLLASFLPLLALGPTAGDGE-- 639
Query: 192 NSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGY 251
G G P+G +G+G + P PL+ PT A + L A P G
Sbjct: 640 -------GSAEGAGGPSGEPFSGLGD-LSPLLFPPLSAPPTLIALNSALLAATLDPPSGT 691
Query: 252 PGPPQAQPLPRQGVKR---TYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPP-APSPSYPG 307
P P P+ G T + PG A S + + G+PP SP
Sbjct: 692 PPQPCVLSAPQPGPPTSSVTTATTDPG---------ASSLGKAPSNSGRPPQLLSPLLGA 742
Query: 308 HRLPLQQGMTQS-------LSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSS--- 357
L +T S L PGP + +PG G PP++ +SS
Sbjct: 743 SLLGDLSSLTSSPGALPSLLQPPGPLLSGQLGLQLLPG-------GGAPPPLSEASSPLA 795
Query: 358 ---VPYMSPNQEVKSPFLPDLKP 377
P ++ ++P LP P
Sbjct: 796 CLLQSLQIPPEQPEAPCLPPESP 818
Score = 31.2 bits (69), Expect = 4.5
Identities = 68/271 (25%), Positives = 91/271 (33%), Gaps = 48/271 (17%)
Query: 128 PGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGA 187
PGG G+ D T+ A A AT + T + + + G
Sbjct: 84 PGGAGV---GPASEEDMTKLCNHRRKAVAMATLYRSMETTCS------------HSSPGE 128
Query: 188 GQSFNSQFLQHGGPRGPSVPAGMNPTG-IGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRL 246
G S GP P + PT + G GP L P P + P AG
Sbjct: 129 GASPQMFHTVSPGPPSARPPCRVPPTTPLNG--GPGSLPP---EPPSVSQAFPTLAG--- 180
Query: 247 PQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYP 306
P +P P A P+P G ++L G APSP PP P+ S
Sbjct: 181 PGGLFP-PRLADPVPSGGSS--------SPRFLPRGN--------APSPAPPPPPAISLN 223
Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPL----PGNPTPPMTPSSSVP-YM 361
+ SL VP G P S PL PP+ PS+++P +
Sbjct: 224 APSYNWGAALRSSL-VPSDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHP 282
Query: 362 SP-NQEVKSPFLPDLKPNLNSLHSSPSGSGP 391
P +Q S L L L +P+ GP
Sbjct: 283 GPASQPPVSSATMHLPLVLGPLGGAPTVEGP 313
Score = 31.2 bits (69), Expect = 4.5
Identities = 51/205 (24%), Positives = 68/205 (33%), Gaps = 46/205 (22%)
Query: 197 QHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQ 256
QH PS G P PS ++ P++ P + L G P +
Sbjct: 331 QHPPLPPPSTLQGRRPRA----QAPSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQTPRR 386
Query: 257 AQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFA--PSPGQ----------------P 298
++P V + +S P Q L PS P+PG P
Sbjct: 387 SRPRAPAPVPQPFSLPEPSQPIL------PSVLSLLGLPTPGPSHSDGSFNLLGSDAHLP 440
Query: 299 PAP---SPSYPGHRLPLQQGM--TQSLSVPGPTGLHYKPTRS-IPGYPSSPL-------- 344
P P S S P R P+Q + T S S+ G P S P PS L
Sbjct: 441 PPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASKAPVVPSPVLQSPSEGLG 500
Query: 345 ----PGNPTPPMTPSSSVPYMSPNQ 365
P P PP+ + P+ SP Q
Sbjct: 501 MGAGPACPLPPLAGGEAFPFPSPEQ 525
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 57.4 bits (137), Expect = 6e-08
Identities = 101/398 (25%), Positives = 140/398 (35%), Gaps = 47/398 (11%)
Query: 10 ALPPAPHGDGSF-AYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPS 68
A PP+P G + + + P + T P+ S T + G +T P P GSP+
Sbjct: 991 ATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAA--TPPSPKGSPA 1048
Query: 69 GSSMMPGVAGGSSALTSPQCLGQQAFAE-GGANKGYVQQGVYSRGG--YPGAPGFTTGYA 125
+ + G A + A T P G A GA +GG P G A
Sbjct: 1049 ATPLPKG-APTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPA 1107
Query: 126 GGP----GGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
P GGL P H P+T A + A A T AA L+
Sbjct: 1108 ATPPSPKGGLATPPHKGAPTTP--AATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLAT 1165
Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSG----LSPLAMNPTRAAGM 237
GA P+ PA P+ GG+ PS +P A P+ G+
Sbjct: 1166 PPPKGA----------------PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL 1209
Query: 238 -TPLYAGQRLPQHGYPGPPQ---AQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
TP G P P+ A P P+ G T + P + GG P+T
Sbjct: 1210 ATPSPKGAPTTPAATPPSPKGGLATPSPK-GAPTTPAATPPSPK---GG---PATPPPKG 1262
Query: 294 SPGQPPAPSPSYPGH-RLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPM 352
+P P A PS G P +G V P+ T G P+ P P+P
Sbjct: 1263 APTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKG 1322
Query: 353 TPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSG 390
+P + P +P +P P P L + ++PS G
Sbjct: 1323 SPGTPPPKGAPTPPAVTPPSPKGTPTLPA--TTPSSKG 1358
Score = 50.4 bits (119), Expect = 7e-06
Identities = 98/428 (22%), Positives = 142/428 (33%), Gaps = 39/428 (9%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQ-----VLGNPMGP 63
P+LPPA G+ + + + A S T +AT S L + P
Sbjct: 737 PSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLTYLADSPSP 796
Query: 64 AG-SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTT 122
G S S + P GS+ +P +G + ++ + S G +P TT
Sbjct: 797 LGVSVSPQTKRPPTKKGSAGPDTP--IGNLSSPVSPVEASFLPENSLSFQGSKDSPA-TT 853
Query: 123 GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQY 182
P G P+ +A T + T T + + + Q
Sbjct: 854 HSPTPPSPKGAPTPSA-----VTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQA 908
Query: 183 GAMGAGQSFNSQFLQHGGPRG----------PSVPAGMNPTGIGGVMGPSGLSPLAMNPT 232
A+ S + P+G P+ PA P+ GG PS A P
Sbjct: 909 PALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPS--PKWAPTPP 966
Query: 233 RAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEV---YPGQQYLQGGQYAPSTA 289
A +P G P PP A P +G T S P + +P+
Sbjct: 967 AATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAAT 1026
Query: 290 QFAPSPGQPPA---PSPSYPGHRLPLQQGM--TQSLSVPGPTGLHYKPTRSIPGYPSSPL 344
F PPA PSP PL +G T + ++P P G P S+ G P+ P
Sbjct: 1027 PFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATP--SLKGAPTPPA 1084
Query: 345 PGNPTP---PMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPV 401
P+P P TPS M P SP P ++P+ + P + L P
Sbjct: 1085 ATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPP 1144
Query: 402 RDGVVLEP 409
G P
Sbjct: 1145 PKGAPTTP 1152
Score = 48.9 bits (115), Expect = 2e-05
Identities = 88/390 (22%), Positives = 120/390 (30%), Gaps = 80/390 (20%)
Query: 10 ALPPAPHGDGSF-AYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG------ 62
A PP+P G + + + P +AT P+ + T T + +P G
Sbjct: 1085 ATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPP 1144
Query: 63 PAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTT 122
P G+P+ + P G A P+ A + KG + S G P P T
Sbjct: 1145 PKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGL--ATPSPKGAPTTPAATP 1202
Query: 123 GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQY 182
GGL PS P+T AA + AT + T A +
Sbjct: 1203 --PSPKGGLATPSPKGAPTTP---AATPPSPKGGLATPSPKGAPTTPAATPPSPK----- 1252
Query: 183 GAMGAGQSFNSQFLQHGGPR------GPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAG 236
GGP P+ PA P+ GG+ P A NP
Sbjct: 1253 ----------------GGPATPPPKGAPTPPAATPPSLKGGLATPPHKG--APNPAVVTP 1294
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
+P P G P PP A P +G +P T P G
Sbjct: 1295 PSPKGGPATSPPKGAPTPPAATPPSPKG--------------------SPGTP---PPKG 1331
Query: 297 QPPAP---------SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGN 347
P P +P+ P + G T S GPT P + P + P
Sbjct: 1332 APTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPT-----PPAATPSHKGGPAMTP 1386
Query: 348 PTPPMTPSSSVPYMSPNQEVKSPFLPDLKP 377
P+P P+ P P P P P
Sbjct: 1387 PSPKRGPAIPSPKGDPTSPAVIPLSPKKAP 1416
Score = 46.6 bits (109), Expect = 1e-04
Identities = 62/226 (27%), Positives = 79/226 (34%), Gaps = 33/226 (14%)
Query: 651 TCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALG-PGAAPF----- 704
T S K P P GPA T SP P + + G P A PF
Sbjct: 979 TPSPKGAPTPPAATPPSPKGGPA-----TPSPKGAPTPPAVTPPSPKGSPAATPFPKGAS 1033
Query: 705 -----APLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQS 759
P P PA + P +G+ T P P P+TP+L + P PP + S
Sbjct: 1034 TPPAATPPSPKGSPAATPLP-KGAPTTPAATLPS--PKGGPATPSL-KGAPTPPAATPPS 1089
Query: 760 DIPSSLLTSEKSTACLPSQMAPA---GHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPP 816
S K P+ P+ G P H G T+ PP P+ + PPP
Sbjct: 1090 PKGGPATPSPKGAPMPPAATPPSPKGGLATPPHK----GAPTTPAATPPSPKGGLATPPP 1145
Query: 817 ASRQSLGQAS-LGPTGELAF-----SPATGVMGPPSMSGAGEAPEP 856
+ A+ P G LA +P T PPS G P P
Sbjct: 1146 KGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSP 1191
Score = 45.8 bits (107), Expect = 2e-04
Identities = 64/240 (26%), Positives = 80/240 (33%), Gaps = 29/240 (12%)
Query: 655 KPVPVKPDMHIKEEPDGPALKRCRTV-SPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVP 713
K P P + GPA + +P PS A P AP PP+
Sbjct: 1054 KGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPM----PPAAT 1109
Query: 714 APSDYPGQGSS-FLGPGTFPESFPPT------TP---STPTLAEFTPGPPPISYQSDIPS 763
PS G + G T P + PP+ TP PT TP P + P
Sbjct: 1110 PPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPK 1169
Query: 764 SLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLG 823
T+ +T PS P G L P G T+ PP P+ + P P +
Sbjct: 1170 GAPTTPAATP--PS---PKGGLA---TPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTP 1221
Query: 824 QASL-GPTGELAF-----SPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPP 877
A+ P G LA +P T PPS G P P P P L L P
Sbjct: 1222 AATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATP 1281
Score = 43.1 bits (100), Expect = 0.001
Identities = 59/226 (26%), Positives = 78/226 (34%), Gaps = 30/226 (13%)
Query: 651 TCSWKPVPVKPDMHIKEEPDGPALKRCRTV-SPAHVLMPSVMEMIAALGPGAAPFAPLQP 709
T S K P P GPA + +P PS+ +A AP
Sbjct: 1234 TPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAP-----N 1288
Query: 710 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPS-TPTLAEFTPGPPPISYQSDIPSSLLTS 768
P+V P G GP T P PT P+ TP + +PG PP P+ S
Sbjct: 1289 PAVVTPPSPKG------GPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPS 1342
Query: 769 EKSTACLPS--------QMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP-PPASR 819
K T LP+ P+ PT TP PP P+ + P P
Sbjct: 1343 PKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDP 1402
Query: 820 QSLGQASLGP--------TGELAFSPATGVMGPPSMSGAGEAPEPA 857
S L P T E A +P+ G + PP+++ PA
Sbjct: 1403 TSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPA 1448
Score = 43.1 bits (100), Expect = 0.001
Identities = 99/427 (23%), Positives = 136/427 (31%), Gaps = 73/427 (17%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P PA P P G A P + A PA VVT G S G P PA
Sbjct: 1264 PTPPAATP-PSLKGGLA---TPPHKGAPNPA----VVTPPSPKGGPATSPPKGAPTPPAA 1315
Query: 66 SPSGSSMMPGV-----AGGSSALTSPQCLGQQAF------AEGGANKGYVQQGVYSRGGY 114
+P PG A A+T P G ++GG ++G
Sbjct: 1316 TPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEG------- 1368
Query: 115 PGAPGFTTGYAGGPG--------GLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATA 166
P P T + GGP G +PS P++ + A T AT
Sbjct: 1369 PTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATP 1428
Query: 167 TVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRG-PSVPAGMNPTGIGGVMGPSGLS 225
+ L +S A P+G P+ P+ + V PS
Sbjct: 1429 SKGDLTPPAVTPVSLKKAPATS-----------APKGGPATPSSKGDPTLPAVTPPSPKE 1477
Query: 226 PLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYA 285
P A A +P A P P A LP V P +
Sbjct: 1478 PPAPKQV-ATSSSPKKAPAT------PAPMGAPTLPA---------VIPSSP-----KEV 1516
Query: 286 PSTAQFAPSPGQPPAP--SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT-RSIPGYPSS 342
P+T P P A S P P + + +++VP P PT + P PSS
Sbjct: 1517 PATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSS 1576
Query: 343 PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVR 402
+P P +TPS+ SP + + P + P+ + P+ + P E P
Sbjct: 1577 KEASSP-PAVTPSTYKGAPSPKELLIPPAV--TSPSPKEAPTPPAVTPPSPEKGPATPAP 1633
Query: 403 DGVVLEP 409
G P
Sbjct: 1634 KGTPTSP 1640
Score = 40.8 bits (94), Expect = 0.006
Identities = 64/273 (23%), Positives = 83/273 (30%), Gaps = 47/273 (17%)
Query: 650 PTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQP 709
P + P P P P + T+ P PSV+ + A P AP Q
Sbjct: 850 PATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATP-APKQA 908
Query: 710 PSV-------------PAPSDYPGQGSSFLGPGTFPESFPPT------------------ 738
P++ PAP P S G T P + PP+
Sbjct: 909 PALSMTSSSPKKARATPAPKGIPASPSP-KGAPTPPAATPPSPKGGPATPSPKWAPTPPA 967
Query: 739 -TPSTPTLAEFTPG------PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNP 791
TP +P TP PP + S S K P+ P+ P P
Sbjct: 968 ATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATP 1027
Query: 792 GTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLGQASL-----GP-TGELAFSPATGVMGP 844
G T PP P+ + P P + A+L GP T L +P P
Sbjct: 1028 FPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATP 1087
Query: 845 PSMSGAGEAPEPALDLLPELTNPDELLSYLGPP 877
PS G P P +P P L P
Sbjct: 1088 PSPKGGPATPSPKGAPMPPAATPPSPKGGLATP 1120
Score = 38.5 bits (88), Expect = 0.028
Identities = 81/293 (27%), Positives = 96/293 (32%), Gaps = 89/293 (30%)
Query: 687 MPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYP----GQGSSFLGPGT---------FPE 733
M S + + AALG P L PP PAP P Q S F P T FP+
Sbjct: 28 MSSALSVTAALGQ---PGPTLPPPCSPAPQQCPLSAANQASPFPSPSTIASTPLEVPFPQ 84
Query: 734 SFP------PTTPSTPTLAEFTPGPP---------------------------------P 754
S T P PT GPP P
Sbjct: 85 SSSGTALPLGTAPEAPTFLPNLIGPPISPAALALASPMIAPTLKGTPSSSAPLALVALAP 144
Query: 755 ISYQ--SDIPSSLLTSEKSTACLPS-----QMAPAGHLDPTHNPG-TPGLHTSNLGAPPG 806
S Q S P +LLTS S A S AP +P N P N P
Sbjct: 145 HSVQKSSAFPPNLLTSPPSVAVAESGSVITLSAPIAPSEPKTNLNKVPSEVVPNPKGTPS 204
Query: 807 PQL------HHSNPPPASRQSLGQASL---GPTGELAF-----------SPATGVMGPPS 846
P +H P AS QS G ASL PT LA S P S
Sbjct: 205 PPCIVSTVPYHCVTPMASIQS-GVASLPQTTPTTTLAIASPQVKDTTISSVLISPQNPGS 263
Query: 847 MSGAGE-APEPALDL----LPELTNPDELLSYLGPPDLPTNNNDDLLSLFENN 894
+S G +P AL L LP +T+ + PPD P + L L +++
Sbjct: 264 LSLKGPVSPPAALSLSTQSLPVVTSSQKTAGPNTPPDFPISLGSHLAPLHQSS 316
Score = 37.7 bits (86), Expect = 0.048
Identities = 52/208 (25%), Positives = 78/208 (37%), Gaps = 28/208 (13%)
Query: 666 KEEPDGPALKRCRTVSPAHVLM----PSVMEMIAALGPGAAPF-APLQPPSVPAPSDYPG 720
KE P P+ +R ++P L+ P+ + AL P A +P + P++P P + P
Sbjct: 1514 KEVPATPSSRR-DPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPA 1572
Query: 721 QGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMA 780
P + S PP TP+ + P P + IP ++ + A P +
Sbjct: 1573 T------PSSKEASSPPAV--TPSTYKGAPSPKELL----IPPAVTSPSPKEAPTPPAVT 1620
Query: 781 PAGHLDPTHNPGTPGLHTSNLGAPPGP-QLHHSNPPPASRQSLGQASLGPTGELAFSPAT 839
P P P TP + P P L S PAS +G T A
Sbjct: 1621 PP---SPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPAS----VTCKMGATVPQASKGLP 1673
Query: 840 GVMGPPSMSGAGEAPEPALDLLPELTNP 867
GP ++ AP P + P +T P
Sbjct: 1674 AKKGPTALKEVLVAPAP--ESTPIITAP 1699
Score = 35.8 bits (81), Expect = 0.18
Identities = 93/421 (22%), Positives = 141/421 (33%), Gaps = 80/421 (19%)
Query: 22 AYESVP-WQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSSMMPGVAGGS 80
A E+VP +Q QP +V+ + G + P SP+ A +
Sbjct: 5 ATETVPATEQELPQPQAETAVLPMSSALSVTAALGQPGPTLPPPCSPAPQQCPLSAANQA 64
Query: 81 SALTSPQCLG----QQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAG---GPGGLGL 133
S SP + + F + + G P AP F G P L L
Sbjct: 65 SPFPSPSTIASTPLEVPFPQSSSGTAL------PLGTAPEAPTFLPNLIGPPISPAALAL 118
Query: 134 PSHAARPSTDFTQAAAA--AAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSF 191
S P+ T +++A A VA A + ++ L S +++ G++
Sbjct: 119 ASPMIAPTLKGTPSSSAPLALVALAPHSVQKSSAFPPNLLTSPPSVAVAESGSV------ 172
Query: 192 NSQFLQHGGPRGPSVP-AGMNPTGIGGVMGPSGLS--PLAMNPTRAAGMTPLYAGQRLPQ 248
+ P PS P +N V P G P ++ +TP+ + Q
Sbjct: 173 ----ITLSAPIAPSEPKTNLNKVPSEVVPNPKGTPSPPCIVSTVPYHCVTPMAS----IQ 224
Query: 249 HGYPGPPQAQPLPRQGVKR------TYSEVY-----PGQQYLQGGQYAPS---------- 287
G PQ P + T S V PG L+G P+
Sbjct: 225 SGVASLPQTTPTTTLAIASPQVKDTTISSVLISPQNPGSLSLKGPVSPPAALSLSTQSLP 284
Query: 288 ---TAQFAPSPGQPPAPSPSYPGHRLPLQQ---GMTQSLSVPGPTGLHYKPTRSI----- 336
++Q P PP S H PL Q G Q L GP+ L ++I
Sbjct: 285 VVTSSQKTAGPNTPPDFPISLGSHLAPLHQSSFGSVQLLGQTGPSALSDPTVKTISVDHS 344
Query: 337 ---PGYPSS-----PLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSG 388
YPS PLP ++ P ++P+ + K P ++S+ SPSG
Sbjct: 345 STGASYPSQRSVIPPLPSRNEVVPATVAAFPVVAPSVD-KGP------STISSITCSPSG 397
Query: 389 S 389
S
Sbjct: 398 S 398
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 57.0 bits (136), Expect = 8e-08
Identities = 98/367 (26%), Positives = 124/367 (33%), Gaps = 51/367 (13%)
Query: 58 GNPMGPAGSPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYP 115
G P GP G P+G PG +G G SP G+ + GV G P
Sbjct: 60 GTP-GPPG-PAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKP 117
Query: 116 GAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ-EK 174
G G G G G GLP P A +V T EK
Sbjct: 118 GERG-PYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEK 176
Query: 175 QSQEL----SQYGAMG---AGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPL 227
+ + Q G MG G+ GP GPS P G+ G GV G G+
Sbjct: 177 GAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGD 236
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPR--QGVKRTYSEVYPGQQYLQGGQYA 285
P M P+ G PG PQ P R +G+ + + PGQ + G +
Sbjct: 237 RGFP---GEMGPI---------GPPG-PQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGL 283
Query: 286 PSTAQFAPSPGQPPAPSPSYPGHR----------LPLQQGMTQSLSVPGPTGLHYKP--- 332
P A PG P P PG + P +G +PG GL P
Sbjct: 284 PGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNM 343
Query: 333 ----TRSIPGYPSSPLPGNPTPPMTPS----SSVPYMSPNQEVKSPFLPDLKPNLNSLHS 384
+ IPG P P T P P+ + SP + K P P KP L+
Sbjct: 344 GPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGK-PGYPG-KPGLDGPKG 401
Query: 385 SPSGSGP 391
+P GP
Sbjct: 402 NPGLPGP 408
Score = 54.3 bits (129), Expect = 5e-07
Identities = 91/360 (25%), Positives = 114/360 (31%), Gaps = 53/360 (14%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVG-----NATQSQVLGNP 60
P P P P G G VP Q G + + G + +G P
Sbjct: 207 PQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKP 266
Query: 61 MGPAGSPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAP 118
G AG+P G +PG G G+ + P G F + G ++G G PGA
Sbjct: 267 -GAAGAP-GQPGIPGTKGLPGAPGIAGPP--GPPGFGKPGLPGLKGERGPAGLPGGPGAK 322
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G G AG PG GL + + T A
Sbjct: 323 G-EQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPA----------- 370
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMT 238
GA G S S G P P P P G G+ GP G P P G
Sbjct: 371 -GYPGAKGERGSPGSD----GKPGYPGKPGLDGPKGNPGLPGPKG-DPGVGGPPGLPGPV 424
Query: 239 PLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP 298
+ +P H P+ P G+ T + P P F S G P
Sbjct: 425 GPAGAKGMPGHNGEAGPRGAP----GIPGTRGPIGP-----------PGIPGFPGSKGDP 469
Query: 299 PAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSV 358
+P P PG +G+ PGP G R G P LPG P PP P +V
Sbjct: 470 GSPGP--PGPAGIATKGLNGPTGPPGPPG-----PRGHSGEPG--LPGPPGPPGPPGQAV 520
Score = 47.0 bits (110), Expect = 8e-05
Identities = 57/187 (30%), Positives = 66/187 (35%), Gaps = 25/187 (13%)
Query: 709 PPSVPAPSDYPGQ-GSSFLG-PGTFPESFPPTTPSTPTLAEFT-----PGPPPISYQSDI 761
P P P PG+ G +G PG P P T L PGPP + +
Sbjct: 245 PIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFG-KPGL 303
Query: 762 PSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGL--HTSNLG--APPGPQLHHSNPPPA 817
P L E+ A LP G P PG PGL N+G P G H P P
Sbjct: 304 PG--LKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGP- 360
Query: 818 SRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEPALD---LLPELTNPDELLSY 873
+ GP G + A G G P G G +P LD P L P
Sbjct: 361 ------KGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGV 414
Query: 874 LGPPDLP 880
GPP LP
Sbjct: 415 GGPPGLP 421
Score = 37.0 bits (84), Expect = 0.082
Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 769 EKSTACLPSQMAPAGHLDPTHNPGTPGLHT------SNLGAPPGPQLHHSNPPPASRQSL 822
E+ T P P GH P+ PG PG + L PPGP P
Sbjct: 58 EQGTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKP 117
Query: 823 GQ-ASLGPTGELAFSPATGVMGPPSMSGAGEAPEPA 857
G+ GP G++ + G GPP G P PA
Sbjct: 118 GERGPYGPKGDVGPAGLPGPRGPPGPPG---IPGPA 150
Score = 34.7 bits (78), Expect = 0.41
Identities = 45/190 (23%), Positives = 62/190 (32%), Gaps = 24/190 (12%)
Query: 703 PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAE----FTPGPP----P 754
P P P P PS PG+ + PG E P P + + PG P P
Sbjct: 64 PPGPAGPRGHPGPSGPPGK-PGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGP 122
Query: 755 ISYQSDIPSSLLTSEKSTACLPSQMAPAG--------HLDPTHNPGTPGLHTSNLGAPPG 806
+ D+ + L + P PAG PT PG G GAP
Sbjct: 123 YGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGF-PGEKGAPGV 181
Query: 807 PQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTN 866
P ++ + +G + G GE G GP G G+ E + P +
Sbjct: 182 PGMN------GQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKG 235
Query: 867 PDELLSYLGP 876
+GP
Sbjct: 236 DRGFPGEMGP 245
Score = 33.1 bits (74), Expect = 1.2
Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 792 GTPGLHTSNLGAPPGPQLHHSNPPPASRQSL-GQASLGPTGELAFSPATGVMGPPSMSGA 850
GTPG PPGP +P P+ G S G GE G+ GPP S
Sbjct: 60 GTPG--------PPGPAGPRGHPGPSGPPGKPGYGSPGLQGE------PGLPGPPGPSAV 105
Query: 851 GEAPEPALDLLPELTNPDELLSYLGPPDLP 880
G+ P L P P +GP LP
Sbjct: 106 GKPGVPGLPGKPGERGPYGPKGDVGPAGLP 135
Score = 32.7 bits (73), Expect = 1.5
Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 6/114 (5%)
Query: 279 LQGGQYAPSTAQFAPSPGQP-PAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIP 337
++G Q P A G P P+ P PG+ P G+ +PGP G +P
Sbjct: 55 VRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP---GLQGEPGLPGPPGPSAVGKPGVP 111
Query: 338 GYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGP 391
G P P P P P P +P P S+ P GP
Sbjct: 112 GLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG--PAGISVPGKPGQQGP 163
Score = 31.6 bits (70), Expect = 3.4
Identities = 37/141 (26%), Positives = 43/141 (30%), Gaps = 13/141 (9%)
Query: 8 KPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSP 67
KP P P DG +P + G + V G A GP G+P
Sbjct: 387 KPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPV-GPAGAKGMPGHNGEAGPRGAP 445
Query: 68 S--------GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G +PG G SP G A G N G G+ G PG
Sbjct: 446 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG 505
Query: 120 FTTGYAGGPGGLGLPSHAARP 140
G PG G P A P
Sbjct: 506 L----PGPPGPPGPPGQAVMP 522
Score = 30.4 bits (67), Expect = 7.7
Identities = 44/149 (29%), Positives = 49/149 (32%), Gaps = 36/149 (24%)
Query: 709 PPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGP--PPISYQSDIPSSLL 766
PP +P P G PG E+ P P P T GP PP IP
Sbjct: 417 PPGLPGPVGPAGAKGM---PGHNGEAGPRGAPGIPG----TRGPIGPP-----GIPG--- 461
Query: 767 TSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQAS 826
P G P PG G+ T L P GP PP R G+
Sbjct: 462 --------FPGSKGDPGSPGP---PGPAGIATKGLNGPTGPP-----GPPGPRGHSGEPG 505
Query: 827 L-GPTGELAFSPATGVMGPPSMSGAGEAP 854
L GP G P VM P AG+ P
Sbjct: 506 LPGPPGPPG-PPGQAVM-PEGFIKAGQRP 532
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 57.0 bits (136), Expect = 8e-08
Identities = 92/311 (29%), Positives = 106/311 (34%), Gaps = 30/311 (9%)
Query: 60 PMGPAGSPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
P GP G GS PG+ G G P +A G KG ++G G G
Sbjct: 601 PQGPKGQ-KGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKG--ERGAAGEPGPHGP 657
Query: 118 PGFTTGYAGGPGGLGLPSHAARPSTDFTQA--AAAAAVAAAAATATATATATVAALQEKQ 175
PG G G G G P P Q EK
Sbjct: 658 PG-VPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKG 716
Query: 176 SQELS----QYGAMGA-GQSFNSQFLQHGGPRGPSVPAG-MNPTGIGGVMGPSGLSPLAM 229
+ L+ G GA G+ + GP G P G TG+ G+ GP G S
Sbjct: 717 PRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPG 776
Query: 230 NPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQ-GGQYAPST 288
P G+T Q LP G PG P + P K SE G L G P
Sbjct: 777 KP----GLTGPQGPQGLP--GTPGRPGIKGEPGAPGKIVTSE---GSSMLTVPGPPGPPG 827
Query: 289 AQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYP---SSPLP 345
A P P P AP P+ P LP Q + PGP G P SIPG P P
Sbjct: 828 AMGPPGP--PGAPGPAGPAG-LPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGE 884
Query: 346 GNPTPPMTPSS 356
G P PP P S
Sbjct: 885 GLPGPPGPPGS 895
Score = 52.8 bits (125), Expect = 1e-06
Identities = 51/170 (30%), Positives = 58/170 (34%), Gaps = 39/170 (22%)
Query: 713 PAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE-KS 771
P PS PG+ PG T P P TPG P I + P ++TSE S
Sbjct: 769 PGPSGDPGK------PGL-------TGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSS 815
Query: 772 TACLPSQMAPAGHLDPTHNPGTPG----------LHTSNLGAPPGPQLHHSNP------P 815
+P P G + P PG PG NL PPGP P P
Sbjct: 816 MLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGP 875
Query: 816 PASRQSLGQASLGPTG---------ELAFSPATGVMGPPSMSGAGEAPEP 856
P R G+ GP G E S G GPP G P P
Sbjct: 876 PGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGP 925
Score = 44.3 bits (103), Expect = 5e-04
Identities = 104/450 (23%), Positives = 148/450 (32%), Gaps = 77/450 (17%)
Query: 4 MNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGS-LSVVTTVWGVGNATQSQVLGNPMG 62
+N P PP P G S+P P G L G + L P G
Sbjct: 853 LNLQGPPGPPGPRGPPG---PSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPG 909
Query: 63 PAG--SPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAP 118
P G P G PG G G L G +F G QG G P P
Sbjct: 910 PPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSF-------GLNLQGPPGPPG-PQGP 961
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G G PG LG+PS + + T + ++++ ++ Q
Sbjct: 962 KGDKGDPGVPGALGIPSGPSEGGSSSTMYVS----GPPGPPGPPGPPGSISSSGQEIQQY 1017
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGM- 237
+S+Y + +S+ S GP GP P G T G S L+ ++ R +G
Sbjct: 1018 ISEYMQSDSIRSYLSGV---QGPPGPPGPPGPVTTITGETFDYSELASHVVSYLRTSGYG 1074
Query: 238 TPLYAG-----------------QRLPQH-----GYPGPPQAQPLPRQGVKRTYSEVYPG 275
L++ Q L Q+ G PGPP A + Y+E+
Sbjct: 1075 VSLFSSSISSEDILAVLQRDDVRQYLRQYLMGPRGPPGPPGASG-DGSLLSLDYAEL--S 1131
Query: 276 QQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQ----QGMTQSLSVPGPTG---- 327
+ L + + PG P P SY L+ +G+ PGP G
Sbjct: 1132 SRILSYMSSSGISIGLPGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPPGPPGPPGIPGN 1191
Query: 328 -------------LHYKPTRSIPGYPSSPLPGNPT-PPMTPSSSVPYMSPNQE-VKSPFL 372
LH IPG P P P P PP + Y + N + +S +
Sbjct: 1192 VWSSISVEDLSSYLHTAGLSFIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELI 1251
Query: 373 -----PDLKPNLNSLHSSPSGSGPCDELRL 397
PD++ + P GP + RL
Sbjct: 1252 SYLTSPDVRSFIVGPPGPPGPQGPPGDSRL 1281
Score = 42.7 bits (99), Expect = 0.001
Identities = 74/300 (24%), Positives = 103/300 (34%), Gaps = 56/300 (18%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
P GP G P G PGV+G + + N + + S P
Sbjct: 1216 PPGPPGPP-GPRGPPGVSGALATYAAE-------------NSDSFRSELISYLTSPDVRS 1261
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
F G G PG G P + STD A+ +++++ +++ ++ S
Sbjct: 1262 FIVGPPGPPGPQGPPGDSRLLSTD------ASHSRGSSSSSHSSSVRRGSSYSSSMSTGG 1315
Query: 180 SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTP 239
G++GAG +F + G RGP G +GP G AA
Sbjct: 1316 GGAGSLGAGGAFG----EAAGDRGP----------YGTDIGPGG-------GYGAAAEGG 1354
Query: 240 LYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPP 299
+YAG G G A L + SE Q LQG Y P P PP
Sbjct: 1355 MYAG----NGGLLGADFAGDLDYNELAVRVSESMQRQGLLQGMAYTVQGPPGQPGPQGPP 1410
Query: 300 APS---PSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPG-----YPSSPLPGNPTPP 351
S +Y L ++ GP G K PG P+ P PG+P PP
Sbjct: 1411 GISKVFSAYSNVTADLMDFFQTYGAIQGPPG--QKGEMGTPGPKGDRGPAGP-PGHPGPP 1467
Score = 31.6 bits (70), Expect = 3.4
Identities = 42/156 (26%), Positives = 57/156 (36%), Gaps = 33/156 (21%)
Query: 736 PPTTPST--PTLAEFTPGPP----PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTH 789
PP P + P + +PGP P+ Q L E + P G P
Sbjct: 657 PPGVPGSVGPKGSSGSPGPQGPPGPVGLQG------LRGEVGLPGVKGDKGPMGPPGPKG 710
Query: 790 NPGTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLGQAS----LGPTGELAFSPATGVMGP 844
+ G G L PG + L + P ++ ++G A GP GE + G+ GP
Sbjct: 711 DQGEKG--PRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGP 768
Query: 845 PSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLP 880
P SG +P P LT P GP LP
Sbjct: 769 PGPSG-----DPG---KPGLTGPQ------GPQGLP 790
Score = 30.4 bits (67), Expect = 7.7
Identities = 42/151 (27%), Positives = 53/151 (35%), Gaps = 54/151 (35%)
Query: 750 PGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPG-------------- 795
PG P SY+ ++ S L SE + P G P PG PG
Sbjct: 1154 PGLPGTSYE-ELLSLLRGSE-----FRGIVGPPG---PPGPPGIPGNVWSSISVEDLSSY 1204
Query: 796 LHTSNLGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA----- 850
LHT+ L PGP GP G G GPP +SGA
Sbjct: 1205 LHTAGLSFIPGPP-------------------GPPGP------PGPRGPPGVSGALATYA 1239
Query: 851 -GEAPEPALDLLPELTNPDELLSYLGPPDLP 880
+ +L+ LT+PD +GPP P
Sbjct: 1240 AENSDSFRSELISYLTSPDVRSFIVGPPGPP 1270
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 56.2 bits (134), Expect = 1e-07
Identities = 97/376 (25%), Positives = 121/376 (32%), Gaps = 83/376 (22%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P P LP P G+ + P PAG P GP G
Sbjct: 624 PGPPGLPGIPGKPGTDVFMGPPGSPGEDGPAGE-------------------PGPPGPEG 664
Query: 66 SPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTG 123
P G++ +PG+ G A G N ++G G PG PG G
Sbjct: 665 QPGVDGATGLPGMKGEKGAR--------------GPNGSVGEKGDPGNRGLPGPPG-KKG 709
Query: 124 YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYG 183
AG PG +G P P T + +T + K S+ + G
Sbjct: 710 QAGPPGVMGPPGPPGPPGPP-----GPGCTMGLGFEDTEGSGSTQLLNEPKLSRPTAAIG 764
Query: 184 AMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSG-------LSPLAMNPTRA-- 234
G G RGP GM+ I G GP G LS +N T
Sbjct: 765 LKG-----------EKGDRGPKGERGMDGASIVGPPGPRGPPGHIKVLSNSLINITHGFM 813
Query: 235 -AGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPST--AQF 291
P G P G PG P P PR T +PG + QG + P +
Sbjct: 814 NFSDIPELVGPPGPD-GLPGLP-GFPGPRGPKGDTGLPGFPGLKGEQGEKGEPGAILTED 871
Query: 292 AP---------SPGQPPAPSP----SYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPG 338
P PG AP P PGH+ + G+ PG GL K T+ PG
Sbjct: 872 IPLERLMGKKGEPGMHGAPGPMGPKGPPGHK--GEFGLPGRPGRPGLNGL--KGTKGDPG 927
Query: 339 YPSSPLPGNPTPPMTP 354
PG P PP P
Sbjct: 928 VIMQGPPGLPGPPGPP 943
Score = 40.4 bits (93), Expect = 0.007
Identities = 56/206 (27%), Positives = 71/206 (34%), Gaps = 23/206 (11%)
Query: 669 PDGPALKRCRTVSPAHVLMPSVMEMIAALGP----GAAPFAPLQPPSVPAPSDYPGQGS- 723
PDGP L TV+P + P+ E + G G A + P P PS G +
Sbjct: 531 PDGPPLP-LPTVAPERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGPVGPTAG 589
Query: 724 -----SFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE-KSTACLPS 777
S LG G+ S + L PGPP IP T P
Sbjct: 590 AEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGPPGPPGLPGIPGKPGTDVFMGPPGSPG 649
Query: 778 QMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQAS-------LGPT 830
+ PAG P G PG+ GA P + S+G+ GP
Sbjct: 650 EDGPAGEPGPPGPEGQPGVD----GATGLPGMKGEKGARGPNGSVGEKGDPGNRGLPGPP 705
Query: 831 GELAFSPATGVMGPPSMSGAGEAPEP 856
G+ + GVMGPP G P P
Sbjct: 706 GKKGQAGPPGVMGPPGPPGPPGPPGP 731
Score = 31.2 bits (69), Expect = 4.5
Identities = 39/165 (23%), Positives = 50/165 (30%), Gaps = 25/165 (15%)
Query: 114 YPGAPGFTT--GYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
+PG+P T G G G GLP Q + A
Sbjct: 973 HPGSPELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPLDLAYLRHFLNNL------ 1026
Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGP-----------RGPSVPAGMNPTGIGGVMG 220
+ ++ + G G N FL G P +G +V P G G+ G
Sbjct: 1027 -KGENGDKGFKGEKGEKGDINGSFLMSGPPGLPGNPGPAGQKGETVVGPQGPPGAPGLPG 1085
Query: 221 PSGL----SPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP 261
P G P P G P G + G PGPP LP
Sbjct: 1086 PPGFGRPGDPGPPGPPGPPG-PPAILGAAVALPGPPGPPGQPGLP 1129
Score = 30.8 bits (68), Expect = 5.9
Identities = 35/114 (30%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 250 GYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQG--GQYAPSTAQFAPS--PGQPPAPSPSY 305
G PGPP R + E G + +G G+ F S PG P P P+
Sbjct: 1008 GPPGPPLDLAYLRHFLNNLKGE--NGDKGFKGEKGEKGDINGSFLMSGPPGLPGNPGPAG 1065
Query: 306 PGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVP 359
Q+G T V GP G P +PG P PG+P PP P P
Sbjct: 1066 -------QKGET----VVGPQGPPGAP--GLPGPPGFGRPGDPGPPGPPGPPGP 1106
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 56.2 bits (134), Expect = 1e-07
Identities = 90/330 (27%), Positives = 109/330 (33%), Gaps = 52/330 (15%)
Query: 58 GNPMGPAGSPSGSSMMPGV----AGGSSALTSPQCLGQ-QAFAEGGANKGYVQQGVYSRG 112
G GP G PG+ + ++A +P + Q EG N YSR
Sbjct: 187 GGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRP 246
Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
G G G G GG GG G A AAAAA AAAAA
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG--------- 297
Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPR----GPSVPAGMNPTGIGGVMG-------- 220
YG AG S Q GG G A ++ G G
Sbjct: 298 -------GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQ 350
Query: 221 ---PSGLSP-LAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQ 276
PSG +P L T + M Y G P++ P P P Q GQ
Sbjct: 351 NQHPSGATPTLNQLLTSPSPMMRSYGGS-YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQ 409
Query: 277 QYL--------QGGQYAPSTAQFAPSPGQP-PAPSPSYPGHRLPLQQGMTQSLSV---PG 324
Q G QYA ++ +A + + PA SP PG + QG V P
Sbjct: 410 QAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQ 469
Query: 325 PTGLHYKPTRSIPGYPSSPLPGNPTPPMTP 354
G+ P S P SSP PG P P
Sbjct: 470 LYGMGSNP-HSQP-QQSSPYPGGSYGPPGP 497
Score = 45.4 bits (106), Expect = 2e-04
Identities = 96/388 (24%), Positives = 121/388 (31%), Gaps = 75/388 (19%)
Query: 62 GPAGSP--SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G SP G MM G GG +A S G A G + + Q + G P
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAA----GGFQRFAGQNQHPSGATPTLNQ 363
Query: 120 FTTG-------YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA-------TAT 165
T Y G PS P + AAAA AA A A
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGA 423
Query: 166 ATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPA-------GMNPTGI--- 215
AA + + + AM G + G P P V G NP
Sbjct: 424 QYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQ 483
Query: 216 -----GGVMGPSGLSPLAMNPTRAAGMTP-LYAGQRLPQHGYPG-----------PPQ-- 256
GG GP G P G TP AG + PQ G PPQ
Sbjct: 484 SSPYPGGSYGPPGPQRY---PIGIQGRTPGAMAGMQYPQQQDSGDATWKETFWLMPPQYG 540
Query: 257 ---AQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP-----------PAPS 302
+QG + YS+ QY PS +Q P Q P +
Sbjct: 541 QQGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLA 600
Query: 303 PSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPYM 361
P P H L L Q S S+P +G SI P+ + S+
Sbjct: 601 PGKPNHEDLNLIQQERPS-SLPDLSG-------SIDDLPTGTEATLSSAVSASGSTSSQG 652
Query: 362 SPNQEVKSPFLPDLKPNLNSLHSSPSGS 389
+ +SPF P P+L+S+ PS S
Sbjct: 653 DQSNPAQSPFSPHASPHLSSIPGGPSPS 680
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 56.2 bits (134), Expect = 1e-07
Identities = 90/330 (27%), Positives = 109/330 (33%), Gaps = 52/330 (15%)
Query: 58 GNPMGPAGSPSGSSMMPGV----AGGSSALTSPQCLGQ-QAFAEGGANKGYVQQGVYSRG 112
G GP G PG+ + ++A +P + Q EG N YSR
Sbjct: 187 GGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRP 246
Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
G G G G GG GG G A AAAAA AAAAA
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG--------- 297
Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPR----GPSVPAGMNPTGIGGVMG-------- 220
YG AG S Q GG G A ++ G G
Sbjct: 298 -------GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQ 350
Query: 221 ---PSGLSP-LAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQ 276
PSG +P L T + M Y G P++ P P P Q GQ
Sbjct: 351 NQHPSGATPTLNQLLTSPSPMMRSYGGS-YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQ 409
Query: 277 QYL--------QGGQYAPSTAQFAPSPGQP-PAPSPSYPGHRLPLQQGMTQSLSV---PG 324
Q G QYA ++ +A + + PA SP PG + QG V P
Sbjct: 410 QAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQ 469
Query: 325 PTGLHYKPTRSIPGYPSSPLPGNPTPPMTP 354
G+ P S P SSP PG P P
Sbjct: 470 LYGMGSNP-HSQP-QQSSPYPGGSYGPPGP 497
Score = 49.7 bits (117), Expect = 1e-05
Identities = 94/375 (25%), Positives = 119/375 (31%), Gaps = 62/375 (16%)
Query: 62 GPAGSP--SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G SP G MM G GG +A S G A G + + Q + G P
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAA----GGFQRFAGQNQHPSGATPTLNQ 363
Query: 120 FTTG-------YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA-------TAT 165
T Y G PS P + AAAA AA A A
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGA 423
Query: 166 ATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPA-------GMNPTGI--- 215
AA + + + AM G + G P P V G NP
Sbjct: 424 QYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQ 483
Query: 216 -----GGVMGPSGLSPLAMNPTRAAGMTP-LYAGQRLPQHGYP---GPPQAQPLPRQGVK 266
GG GP G P G TP AG + PQ P G +QG +
Sbjct: 484 SSPYPGGSYGPPGPQRY---PIGIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQ 540
Query: 267 RTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP-----------PAPSPSYPGHR-LPLQQ 314
YS+ QY PS +Q P Q P +P P H L L Q
Sbjct: 541 PYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQ 600
Query: 315 GMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPD 374
S S+P +G SI P+ + S+ + +SPF P
Sbjct: 601 QERPS-SLPDLSG-------SIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPH 652
Query: 375 LKPNLNSLHSSPSGS 389
P+L+S+ PS S
Sbjct: 653 ASPHLSSIPGGPSPS 667
Score = 38.9 bits (89), Expect = 0.022
Identities = 96/409 (23%), Positives = 145/409 (35%), Gaps = 72/409 (17%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGV-GNATQSQVLGNPMGPAGSP 67
P++ P P G +QQS + +G+ + +G GN ++ P +G P
Sbjct: 741 PSMSPHPSPGGQMHAGISSFQQSNS--SGTYGPQMSQYGPQGNYSR------PPAYSGVP 792
Query: 68 SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANK-GYVQQGVYSRGGYPG--------AP 118
S S PG G SA + Q GQ GA G + +PG +P
Sbjct: 793 SASYSGPGPGMGISA--NNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSP 850
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G + GGPG +G P P+ + AAAAV AAA + + + + QS
Sbjct: 851 GMSQ--QGGPG-MGPPM----PTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMN--QSGL 901
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMT 238
++ + +S + P P M P + GL+ + M+P +
Sbjct: 902 MASSSPYSQPMNNSSSLMNTQAP-----PYSMAPAMVNSSAASVGLADM-MSPGESKLPL 955
Query: 239 PLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP 298
PL A G + P P K +YS Q P+PG
Sbjct: 956 PLKAD---------GKEEGTPQPESKSKDSYSSQGISQP---------------PTPGNL 991
Query: 299 PAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSV 358
P PSP P +S S+ P P PSSP + T + V
Sbjct: 992 PVPSPMSPSSASISSFHGDESDSISSP---------GWPKTPSSPKSSSSTTTGEKITKV 1042
Query: 359 PYMSPNQEVK---SPFLPDLKPNLNSLHSSPS-GSGPCDELRLTFPVRD 403
+ E K +L ++ + + S P+ G P D RL V++
Sbjct: 1043 YELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKE 1091
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 56.2 bits (134), Expect = 1e-07
Identities = 90/330 (27%), Positives = 109/330 (33%), Gaps = 52/330 (15%)
Query: 58 GNPMGPAGSPSGSSMMPGV----AGGSSALTSPQCLGQ-QAFAEGGANKGYVQQGVYSRG 112
G GP G PG+ + ++A +P + Q EG N YSR
Sbjct: 187 GGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRP 246
Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
G G G G GG GG G A AAAAA AAAAA
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG--------- 297
Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPR----GPSVPAGMNPTGIGGVMG-------- 220
YG AG S Q GG G A ++ G G
Sbjct: 298 -------GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQ 350
Query: 221 ---PSGLSP-LAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQ 276
PSG +P L T + M Y G P++ P P P Q GQ
Sbjct: 351 NQHPSGATPTLNQLLTSPSPMMRSYGGS-YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQ 409
Query: 277 QYL--------QGGQYAPSTAQFAPSPGQP-PAPSPSYPGHRLPLQQGMTQSLSV---PG 324
Q G QYA ++ +A + + PA SP PG + QG V P
Sbjct: 410 QAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQ 469
Query: 325 PTGLHYKPTRSIPGYPSSPLPGNPTPPMTP 354
G+ P S P SSP PG P P
Sbjct: 470 LYGMGSNP-HSQP-QQSSPYPGGSYGPPGP 497
Score = 49.7 bits (117), Expect = 1e-05
Identities = 94/375 (25%), Positives = 119/375 (31%), Gaps = 62/375 (16%)
Query: 62 GPAGSP--SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G SP G MM G GG +A S G A G + + Q + G P
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAA----GGFQRFAGQNQHPSGATPTLNQ 363
Query: 120 FTTG-------YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA-------TAT 165
T Y G PS P + AAAA AA A A
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGA 423
Query: 166 ATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPA-------GMNPTGI--- 215
AA + + + AM G + G P P V G NP
Sbjct: 424 QYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQ 483
Query: 216 -----GGVMGPSGLSPLAMNPTRAAGMTP-LYAGQRLPQHGYP---GPPQAQPLPRQGVK 266
GG GP G P G TP AG + PQ P G +QG +
Sbjct: 484 SSPYPGGSYGPPGPQRY---PIGIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQ 540
Query: 267 RTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP-----------PAPSPSYPGHR-LPLQQ 314
YS+ QY PS +Q P Q P +P P H L L Q
Sbjct: 541 PYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQ 600
Query: 315 GMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPD 374
S S+P +G SI P+ + S+ + +SPF P
Sbjct: 601 QERPS-SLPDLSG-------SIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPH 652
Query: 375 LKPNLNSLHSSPSGS 389
P+L+S+ PS S
Sbjct: 653 ASPHLSSIPGGPSPS 667
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,379,688
Number of Sequences: 37866
Number of extensions: 3262941
Number of successful extensions: 26480
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 1338
Number of HSP's that attempted gapping in prelim test: 14636
Number of HSP's gapped (non-prelim): 9588
length of query: 894
length of database: 18,247,518
effective HSP length: 111
effective length of query: 783
effective length of database: 14,044,392
effective search space: 10996758936
effective search space used: 10996758936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.