Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 5453844
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453844 TAF6-like RNA polymerase II [Homo sapiens]
(622 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453844 TAF6-like RNA polymerase II [Homo sapiens] 1258 0.0
gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens] 142 9e-34
gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens] 142 9e-34
gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens] 142 9e-34
gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens] 124 2e-28
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 43 0.001
gi|163965366 nascent polypeptide-associated complex alpha subuni... 42 0.002
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 41 0.004
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 41 0.004
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 41 0.004
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 40 0.005
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 40 0.005
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 40 0.005
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 40 0.006
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 40 0.006
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 40 0.008
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 40 0.008
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 39 0.011
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 39 0.011
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 39 0.011
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 39 0.011
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 39 0.014
gi|226371735 iroquois homeobox 3 [Homo sapiens] 39 0.019
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 38 0.024
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 38 0.032
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 38 0.032
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 38 0.032
>gi|5453844 TAF6-like RNA polymerase II [Homo sapiens]
Length = 622
Score = 1258 bits (3256), Expect = 0.0
Identities = 622/622 (100%), Positives = 622/622 (100%)
Query: 1 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR 60
MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR
Sbjct: 1 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR 60
Query: 61 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK 120
RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK
Sbjct: 61 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK 120
Query: 121 GCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVAL 180
GCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVAL
Sbjct: 121 GCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVAL 180
Query: 181 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG 240
QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG
Sbjct: 181 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG 240
Query: 241 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP 300
SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP
Sbjct: 241 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP 300
Query: 301 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG 360
VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG
Sbjct: 301 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG 360
Query: 361 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP 420
AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP
Sbjct: 361 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP 420
Query: 421 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD 480
LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD
Sbjct: 421 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD 480
Query: 481 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG 540
SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG
Sbjct: 481 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG 540
Query: 541 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM 600
TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM
Sbjct: 541 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM 600
Query: 601 IGRTSRPARRWALSDYSLYLPL 622
IGRTSRPARRWALSDYSLYLPL
Sbjct: 601 IGRTSRPARRWALSDYSLYLPL 622
>gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]
Length = 667
Score = 142 bits (358), Expect = 9e-34
Identities = 107/402 (26%), Positives = 187/402 (46%), Gaps = 66/402 (16%)
Query: 12 IPRESVRLMAESTGL-ELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNR 70
+P ES++++AES G+ ++ +E LL ++V YR++E Q++ +FM KR+KLT D +
Sbjct: 14 LPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDY 73
Query: 71 ALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPKGCAETAVR 128
AL+ +VE + G+ +QE +P R A G ELYF E++EV+L ++ + T +P+ + ++
Sbjct: 74 ALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRVPLDVCLK 132
Query: 129 VH--------------------------------------------------VSYLDGKG 138
H + DGKG
Sbjct: 133 AHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGKG 192
Query: 139 NL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQDLQTNSKI 189
AP P ++ L+ + YY ++T A +G ALQ + T+ +
Sbjct: 193 KEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATDPGL 252
Query: 190 GALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVGSVLYCV 246
+LP F ++ GV+ V ++L L L+++ ++L NP L L YV L+ +V+ C+
Sbjct: 253 YQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMTCI 312
Query: 247 LEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADPVRPLCC 306
+ +++HW LRD AA L++ I + + I + K D P
Sbjct: 313 VSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTT 372
Query: 307 HYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSN 348
YG++ GL LG ++ ++ P L +++VLD +SN
Sbjct: 373 RYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSN 414
>gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 142 bits (358), Expect = 9e-34
Identities = 107/402 (26%), Positives = 187/402 (46%), Gaps = 66/402 (16%)
Query: 12 IPRESVRLMAESTGL-ELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNR 70
+P ES++++AES G+ ++ +E LL ++V YR++E Q++ +FM KR+KLT D +
Sbjct: 14 LPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDY 73
Query: 71 ALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPKGCAETAVR 128
AL+ +VE + G+ +QE +P R A G ELYF E++EV+L ++ + T +P+ + ++
Sbjct: 74 ALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRVPLDVCLK 132
Query: 129 VH--------------------------------------------------VSYLDGKG 138
H + DGKG
Sbjct: 133 AHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGKG 192
Query: 139 NL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQDLQTNSKI 189
AP P ++ L+ + YY ++T A +G ALQ + T+ +
Sbjct: 193 KEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATDPGL 252
Query: 190 GALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVGSVLYCV 246
+LP F ++ GV+ V ++L L L+++ ++L NP L L YV L+ +V+ C+
Sbjct: 253 YQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMTCI 312
Query: 247 LEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADPVRPLCC 306
+ +++HW LRD AA L++ I + + I + K D P
Sbjct: 313 VSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTT 372
Query: 307 HYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSN 348
YG++ GL LG ++ ++ P L +++VLD +SN
Sbjct: 373 RYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSN 414
>gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 142 bits (358), Expect = 9e-34
Identities = 107/402 (26%), Positives = 187/402 (46%), Gaps = 66/402 (16%)
Query: 12 IPRESVRLMAESTGL-ELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNR 70
+P ES++++AES G+ ++ +E LL ++V YR++E Q++ +FM KR+KLT D +
Sbjct: 14 LPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDY 73
Query: 71 ALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPKGCAETAVR 128
AL+ +VE + G+ +QE +P R A G ELYF E++EV+L ++ + T +P+ + ++
Sbjct: 74 ALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRVPLDVCLK 132
Query: 129 VH--------------------------------------------------VSYLDGKG 138
H + DGKG
Sbjct: 133 AHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGKG 192
Query: 139 NL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQDLQTNSKI 189
AP P ++ L+ + YY ++T A +G ALQ + T+ +
Sbjct: 193 KEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATDPGL 252
Query: 190 GALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVGSVLYCV 246
+LP F ++ GV+ V ++L L L+++ ++L NP L L YV L+ +V+ C+
Sbjct: 253 YQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMTCI 312
Query: 247 LEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADPVRPLCC 306
+ +++HW LRD AA L++ I + + I + K D P
Sbjct: 313 VSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTT 372
Query: 307 HYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSN 348
YG++ GL LG ++ ++ P L +++VLD +SN
Sbjct: 373 RYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSN 414
>gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]
Length = 667
Score = 124 bits (312), Expect = 2e-28
Identities = 103/401 (25%), Positives = 180/401 (44%), Gaps = 74/401 (18%)
Query: 12 IPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRA 71
+P ES++++AES G+ A + E+ C L + +++ +FM KR+KLT D + A
Sbjct: 14 LPSESMKVVAESMGI-------AQIQEETCQLLTD--EDALKFMHMGKRQKLTTSDIDYA 64
Query: 72 LRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPKGCAETAVRV 129
L+ +VE + G+ +QE +P R A G ELYF E++EV+L ++ + T +P+ + ++
Sbjct: 65 LKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRVPLDVCLKA 123
Query: 130 H--------------------------------------------------VSYLDGKGN 139
H + DGKG
Sbjct: 124 HWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGKGK 183
Query: 140 L---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQDLQTNSKIG 190
AP P ++ L+ + YY ++T A +G ALQ + T+ +
Sbjct: 184 EKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATDPGLY 243
Query: 191 ALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVGSVLYCVL 247
+LP F ++ GV+ V ++L L L+++ ++L NP L L YV L+ +V+ C++
Sbjct: 244 QMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMTCIV 303
Query: 248 EPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADPVRPLCCH 307
+++HW LRD AA L++ I + + I + K D P
Sbjct: 304 SRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTTR 363
Query: 308 YGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSN 348
YG++ GL LG ++ ++ P L +++VLD +SN
Sbjct: 364 YGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSN 404
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 42.7 bits (99), Expect = 0.001
Identities = 45/148 (30%), Positives = 59/148 (39%), Gaps = 14/148 (9%)
Query: 382 GGPGGRGCRRLDDLPWDSLLFQESSSG-GGAEPSFGSGLPLPPGGAGPE-DPSLSVTLA- 438
G PG G + W S+ ++ SS A SF G P PPG GP P +S LA
Sbjct: 1178 GPPGPPGPPGIPGNVWSSISVEDLSSYLHTAGLSFIPGPPGPPGPPGPRGPPGVSGALAT 1237
Query: 439 ------DIYR-ELYAFFGDSLATRFGTGQPAPTAPR-PPGDKKEPAAAPDSVRKMPQLTA 490
D +R EL ++ F G P P P+ PPGD + + R +
Sbjct: 1238 YAAENSDSFRSELISYLTSPDVRSFIVGPPGPPGPQGPPGDSRLLSTDASHSRGSSSSSH 1297
Query: 491 SAIV---SPHGDESPRGSGGGGPASASG 515
S+ V S + G GG G A G
Sbjct: 1298 SSSVRRGSSYSSSMSTGGGGAGSLGAGG 1325
Score = 35.4 bits (80), Expect = 0.16
Identities = 48/181 (26%), Positives = 63/181 (34%), Gaps = 19/181 (10%)
Query: 382 GGPGGRGCRRLDDLPWDSLLFQESSS---GGGAEPSFGSGLPLPPGGAGPEDPSLSVTLA 438
G PG G + P + + SS G P G P PPG GP P+
Sbjct: 791 GTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPG-- 848
Query: 439 DIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHG 498
++E+ G G P P+ P PPG P P P + +S
Sbjct: 849 --HQEVLNLQGPP-GPPGPRGPPGPSIPGPPG----PRGPPGEGLPGPPGPPGSFLS--- 898
Query: 499 DESPRGSGGGGPASASGPAASESRPLPRVHRA-RGAPRQQGPGTGTRDVFQKSRFAPRGA 557
+ SG GP GP + P PR H+ +G P G T F + P G
Sbjct: 899 NSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLP---GFSTSGSSSFGLNLQGPPGP 955
Query: 558 P 558
P
Sbjct: 956 P 956
Score = 35.4 bits (80), Expect = 0.16
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 375 QAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLS 434
Q + ++G PG G + P S GG + + SG P PPG GP S+S
Sbjct: 959 QGPKGDKGDPGVPGALGIPSGP---------SEGGSSSTMYVSGPPGPPGPPGPPG-SIS 1008
Query: 435 VTLADIYRELYAFF-GDSLATRFGTGQPAPTAPRPPG 470
+ +I + + + DS+ + Q P P PPG
Sbjct: 1009 SSGQEIQQYISEYMQSDSIRSYLSGVQGPPGPPGPPG 1045
Score = 33.9 bits (76), Expect = 0.46
Identities = 43/143 (30%), Positives = 58/143 (40%), Gaps = 24/143 (16%)
Query: 380 NRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLAD 439
++G PG RG + LP F S S SFG L PPG GP+ P
Sbjct: 919 DQGPPGPRGHQGEQGLPG----FSTSGSS-----SFGLNLQGPPGPPGPQGPKGDKGDPG 969
Query: 440 IYREL----YAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVS 495
+ L G S +T + +G P P P PPG P + S +++ Q + + S
Sbjct: 970 VPGALGIPSGPSEGGSSSTMYVSGPPGP--PGPPG---PPGSISSSGQEIQQYISEYMQS 1024
Query: 496 PHGDESPRG--SGGGGPASASGP 516
+S R SG GP GP
Sbjct: 1025 ----DSIRSYLSGVQGPPGPPGP 1043
Score = 31.2 bits (69), Expect = 3.0
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 459 GQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAA 518
G P P P+ +K P M Q + P G+ P GSG G A+G
Sbjct: 597 GHPGPQGPK---GQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGERGAAGE-- 651
Query: 519 SESRPLPRVHRARGAPRQQGP 539
P H G P GP
Sbjct: 652 ------PGPHGPPGVPGSVGP 666
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 42.0 bits (97), Expect = 0.002
Identities = 42/137 (30%), Positives = 51/137 (37%), Gaps = 12/137 (8%)
Query: 405 SSSGGGAEPSFGSGLPLPPGGA------GPEDPSLSVTLADIYRELYAFFGDSLATRFGT 458
S GG A PS G P PP GP PS + G AT F
Sbjct: 972 SPKGGPATPS-PKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPK 1030
Query: 459 GQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPH-GDESPRGSGGGGPASASGPA 517
G P A PP K PAA P + P A+ + SP G +P G P +A+ P+
Sbjct: 1031 GASTPPAATPPSPKGSPAATP-LPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPS 1089
Query: 518 ASESRPLPRVHRARGAP 534
P +GAP
Sbjct: 1090 PKGG---PATPSPKGAP 1103
Score = 34.3 bits (77), Expect = 0.35
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 462 APTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASAS-----GP 516
+P P P G PA P S + P L A+ S G +P G P +A+ GP
Sbjct: 1323 SPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGP 1382
Query: 517 AASESRPL--PRVHRARGAP 534
A + P P + +G P
Sbjct: 1383 AMTPPSPKRGPAIPSPKGDP 1402
Score = 33.9 bits (76), Expect = 0.46
Identities = 40/159 (25%), Positives = 48/159 (30%), Gaps = 34/159 (21%)
Query: 405 SSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPT 464
S GG A PS G P P P LAT G P
Sbjct: 1204 SPKGGLATPS-PKGAPTTPAATPPSPKG------------------GLATPSPKGAPTTP 1244
Query: 465 APRPPGDKKEPAA-----APDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAAS 519
A PP K PA AP P + +P +P + P+ GPA S
Sbjct: 1245 AATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATS 1304
Query: 520 ESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAP 558
+ P A + PGT P+GAP
Sbjct: 1305 PPKGAPTPPAATPPSPKGSPGTP----------PPKGAP 1333
Score = 32.0 bits (71), Expect = 1.7
Identities = 38/144 (26%), Positives = 53/144 (36%), Gaps = 31/144 (21%)
Query: 419 LPLPPGG----AGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKE 474
LP P G A + P+LS+T + + + AT G PA +P P G
Sbjct: 893 LPFPKEGPATPAPKQAPALSMTSSSPKK--------ARATPAPKGIPA--SPSPKGAPTP 942
Query: 475 PAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAP 534
PAA P S + P +P +P P+ GPA + P A
Sbjct: 943 PAATPPSPKGGP-------ATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPS 995
Query: 535 RQQGPGTGTRDVFQKSRFAPRGAP 558
+ GP T +P+GAP
Sbjct: 996 PKGGPATP----------SPKGAP 1009
Score = 32.0 bits (71), Expect = 1.7
Identities = 40/157 (25%), Positives = 50/157 (31%), Gaps = 30/157 (19%)
Query: 405 SSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPT 464
S GG A PS G P PP P AT G P P
Sbjct: 1066 SPKGGPATPSL-KGAPTPPAATPPSPKG------------------GPATPSPKGAPMPP 1106
Query: 465 APRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHG---DESPRGSGGGGPASASGPAASES 521
A PP K A P + P A+ SP G P+G+ A+ P +
Sbjct: 1107 AATPPSPKGGLATPPH--KGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLA 1164
Query: 522 RPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAP 558
P P+ A P G + +P+GAP
Sbjct: 1165 TPPPKGAPTTPAATPPSPKGGL------ATPSPKGAP 1195
Score = 31.6 bits (70), Expect = 2.3
Identities = 28/118 (23%), Positives = 36/118 (30%), Gaps = 15/118 (12%)
Query: 413 PSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDK 472
PS GL PP P P+ + LAT G P A PP K
Sbjct: 1157 PSPKGGLATPPPKGAPTTPAATPPSPK----------GGLATPSPKGAPTTPAATPPSPK 1206
Query: 473 -----KEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLP 525
P AP + P + +P +P P+ GPA + P
Sbjct: 1207 GGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAP 1264
Score = 31.2 bits (69), Expect = 3.0
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 460 QPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAAS 519
+ P P P G P P S++ P AS + G P+ S G + GP A
Sbjct: 1625 EKGPATPAPKGTPTSPPVTPSSLKDSPTSPAS-VTCKMGATVPQAS--KGLPAKKGPTAL 1681
Query: 520 ES---RPLPRVHRARGAPRQQGPGT 541
+ P P AP ++GP T
Sbjct: 1682 KEVLVAPAPESTPIITAPTRKGPQT 1706
Score = 30.8 bits (68), Expect = 3.9
Identities = 45/186 (24%), Positives = 59/186 (31%), Gaps = 57/186 (30%)
Query: 405 SSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPT 464
SS GG PS G P PP ++T R P
Sbjct: 1355 SSKGGPTTPSSKEG-PTPPAATPSHKGGPAMTPPSPKR-------------------GPA 1394
Query: 465 APRPPGDKKEPAAAPDSVRKMP---------------QLTASAIVSPHGDESPRGSG-GG 508
P P GD PA P S +K P LT A+ ++P S G
Sbjct: 1395 IPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKG 1454
Query: 509 GPASASG----------PAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAP 558
GPA+ S P + + P P+ +P+ + P T AP GAP
Sbjct: 1455 GPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPK-KAPATP----------APMGAP 1503
Query: 559 HFRFII 564
+I
Sbjct: 1504 TLPAVI 1509
Score = 30.4 bits (67), Expect = 5.1
Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 461 PAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASE 520
PA T+P P PA P S K P T + +P S P S +
Sbjct: 1603 PAVTSPSPKEAPTPPAVTPPSPEKGP-ATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKM 1661
Query: 521 SRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQT 580
+P+ ++G P ++GP T ++V AP P I A + G + + +
Sbjct: 1662 GATVPQA--SKGLPAKKGP-TALKEVLVAP--APESTP---IITAPTRKGPQTKK---SS 1710
Query: 581 AFPAPYGPSPASRYVQKLPM 600
A P P P+++ K P+
Sbjct: 1711 ATSPPICPDPSAKNGSKGPL 1730
Score = 29.6 bits (65), Expect = 8.7
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 458 TGQPAPTAPRPPGDKKEPAAAPDSVRKMPQ----LTASAIVSPHGDESPRGSGGGGPASA 513
T + AP P PA P + + P L A+ SP E+P P+
Sbjct: 1566 TPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPE 1625
Query: 514 SGPAASESRPLP 525
GPA + P
Sbjct: 1626 KGPATPAPKGTP 1637
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 40.8 bits (94), Expect = 0.004
Identities = 66/261 (25%), Positives = 82/261 (31%), Gaps = 43/261 (16%)
Query: 382 GGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIY 441
G PG +G + P + ES G P+ G P PP GP P L D+
Sbjct: 977 GAPGHKGSK---GAPGPAGARGESGLAGAPGPAGPPGPPGPP---GPPGPGLPAGFDDME 1030
Query: 442 RELYAFFGDSLATRFGTGQPA-------PTAPRPPGDKKEPAAAPDSVRKMPQLTA-SAI 493
F+ + + G P P P PG K E A D V P L I
Sbjct: 1031 GSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGI 1088
Query: 494 VSPHGDESPRGSGG---------------GGPASASGPAASESR--------PLPRVHRA 530
P G + RGS G GP GP S P P
Sbjct: 1089 AGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPG 1148
Query: 531 -RGAPRQQGPGTGTRDVFQKSRFAP---RGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPY 586
G P GP ++ P +G P F G G +G + F P
Sbjct: 1149 FAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPP 1208
Query: 587 GPSPASRYVQKLPMIGRTSRP 607
GP Y ++ GR RP
Sbjct: 1209 GPYGRPGYKGEIGFPGRPGRP 1229
Score = 38.1 bits (87), Expect = 0.024
Identities = 46/176 (26%), Positives = 59/176 (33%), Gaps = 31/176 (17%)
Query: 404 ESSSGGGAEPSFGS-GLPLPPGGAGPEDP-SLSVTLADIYRELYAFFGDSLATRFGT-GQ 460
E G A FG G+P PPG GP P V ++++ E ++R G G
Sbjct: 1237 EKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAE---------SSRPGPPGL 1287
Query: 461 PAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGS-----------GGG- 508
P P P K P + P G++ RG GGG
Sbjct: 1288 PGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGF 1347
Query: 509 ------GPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAP 558
GP GP P P+ RG P GP G + + R P G P
Sbjct: 1348 FGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP-QGPPGIGYEGRQGPPGPP 1402
Score = 32.7 bits (73), Expect = 1.0
Identities = 48/183 (26%), Positives = 58/183 (31%), Gaps = 33/183 (18%)
Query: 382 GGPGGRGCRRLDDLP-WDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDP-----SLSV 435
G PG G P +DS +F ESS G G P P G G P
Sbjct: 1255 GPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPF 1314
Query: 436 TLADIYRELYAFFGD--SLATRFGTGQPA---------PTAPRPPGDKKE---PAAAPDS 481
+ E+ GD + G+P P P PPG + P +S
Sbjct: 1315 DFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGES 1374
Query: 482 VRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRP-LPRVHR----ARGAPRQ 536
+R P P G + P G G G GP P P HR G P
Sbjct: 1375 IRGQP--------GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGP 1426
Query: 537 QGP 539
GP
Sbjct: 1427 PGP 1429
Score = 31.6 bits (70), Expect = 2.3
Identities = 38/136 (27%), Positives = 48/136 (35%), Gaps = 27/136 (19%)
Query: 403 QESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPA 462
+ GGG FGS LP PPG GP Y + G+S+ GQP
Sbjct: 1338 ERGEPGGGG--FFGSSLPGPPGPPGPRG----------YPGIPGPKGESI-----RGQPG 1380
Query: 463 PTAPR-PPGDKKEPAAAPDSVR--------KMPQLTASAIVSPHGDESPRGSGGG-GPAS 512
P P+ PPG E P P ++ P G P G G G +S
Sbjct: 1381 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGASS 1440
Query: 513 ASGPAASESRPLPRVH 528
A+ L +VH
Sbjct: 1441 GVRLWATRQAMLGQVH 1456
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 40.8 bits (94), Expect = 0.004
Identities = 66/261 (25%), Positives = 82/261 (31%), Gaps = 43/261 (16%)
Query: 382 GGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIY 441
G PG +G + P + ES G P+ G P PP GP P L D+
Sbjct: 562 GAPGHKGSK---GAPGPAGARGESGLAGAPGPAGPPGPPGPP---GPPGPGLPAGFDDME 615
Query: 442 RELYAFFGDSLATRFGTGQPA-------PTAPRPPGDKKEPAAAPDSVRKMPQLTA-SAI 493
F+ + + G P P P PG K E A D V P L I
Sbjct: 616 GSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGI 673
Query: 494 VSPHGDESPRGSGG---------------GGPASASGPAASESR--------PLPRVHRA 530
P G + RGS G GP GP S P P
Sbjct: 674 AGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPG 733
Query: 531 -RGAPRQQGPGTGTRDVFQKSRFAP---RGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPY 586
G P GP ++ P +G P F G G +G + F P
Sbjct: 734 FAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPP 793
Query: 587 GPSPASRYVQKLPMIGRTSRP 607
GP Y ++ GR RP
Sbjct: 794 GPYGRPGYKGEIGFPGRPGRP 814
Score = 38.1 bits (87), Expect = 0.024
Identities = 46/176 (26%), Positives = 59/176 (33%), Gaps = 31/176 (17%)
Query: 404 ESSSGGGAEPSFGS-GLPLPPGGAGPEDP-SLSVTLADIYRELYAFFGDSLATRFGT-GQ 460
E G A FG G+P PPG GP P V ++++ E ++R G G
Sbjct: 822 EKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAE---------SSRPGPPGL 872
Query: 461 PAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGS-----------GGG- 508
P P P K P + P G++ RG GGG
Sbjct: 873 PGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGF 932
Query: 509 ------GPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAP 558
GP GP P P+ RG P GP G + + R P G P
Sbjct: 933 FGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP-QGPPGIGYEGRQGPPGPP 987
Score = 32.7 bits (73), Expect = 1.0
Identities = 48/183 (26%), Positives = 58/183 (31%), Gaps = 33/183 (18%)
Query: 382 GGPGGRGCRRLDDLP-WDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDP-----SLSV 435
G PG G P +DS +F ESS G G P P G G P
Sbjct: 840 GPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPF 899
Query: 436 TLADIYRELYAFFGD--SLATRFGTGQPA---------PTAPRPPGDKKE---PAAAPDS 481
+ E+ GD + G+P P P PPG + P +S
Sbjct: 900 DFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGES 959
Query: 482 VRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRP-LPRVHR----ARGAPRQ 536
+R P P G + P G G G GP P P HR G P
Sbjct: 960 IRGQP--------GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGP 1011
Query: 537 QGP 539
GP
Sbjct: 1012 PGP 1014
Score = 31.6 bits (70), Expect = 2.3
Identities = 38/136 (27%), Positives = 48/136 (35%), Gaps = 27/136 (19%)
Query: 403 QESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPA 462
+ GGG FGS LP PPG GP Y + G+S+ GQP
Sbjct: 923 ERGEPGGGG--FFGSSLPGPPGPPGPRG----------YPGIPGPKGESI-----RGQPG 965
Query: 463 PTAPR-PPGDKKEPAAAPDSVR--------KMPQLTASAIVSPHGDESPRGSGGG-GPAS 512
P P+ PPG E P P ++ P G P G G G +S
Sbjct: 966 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGASS 1025
Query: 513 ASGPAASESRPLPRVH 528
A+ L +VH
Sbjct: 1026 GVRLWATRQAMLGQVH 1041
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 40.8 bits (94), Expect = 0.004
Identities = 66/261 (25%), Positives = 82/261 (31%), Gaps = 43/261 (16%)
Query: 382 GGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIY 441
G PG +G + P + ES G P+ G P PP GP P L D+
Sbjct: 742 GAPGHKGSK---GAPGPAGARGESGLAGAPGPAGPPGPPGPP---GPPGPGLPAGFDDME 795
Query: 442 RELYAFFGDSLATRFGTGQPA-------PTAPRPPGDKKEPAAAPDSVRKMPQLTA-SAI 493
F+ + + G P P P PG K E A D V P L I
Sbjct: 796 GSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGI 853
Query: 494 VSPHGDESPRGSGG---------------GGPASASGPAASESR--------PLPRVHRA 530
P G + RGS G GP GP S P P
Sbjct: 854 AGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPG 913
Query: 531 -RGAPRQQGPGTGTRDVFQKSRFAP---RGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPY 586
G P GP ++ P +G P F G G +G + F P
Sbjct: 914 FAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPP 973
Query: 587 GPSPASRYVQKLPMIGRTSRP 607
GP Y ++ GR RP
Sbjct: 974 GPYGRPGYKGEIGFPGRPGRP 994
Score = 38.1 bits (87), Expect = 0.024
Identities = 46/176 (26%), Positives = 59/176 (33%), Gaps = 31/176 (17%)
Query: 404 ESSSGGGAEPSFGS-GLPLPPGGAGPEDP-SLSVTLADIYRELYAFFGDSLATRFGT-GQ 460
E G A FG G+P PPG GP P V ++++ E ++R G G
Sbjct: 1002 EKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAE---------SSRPGPPGL 1052
Query: 461 PAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGS-----------GGG- 508
P P P K P + P G++ RG GGG
Sbjct: 1053 PGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGF 1112
Query: 509 ------GPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAP 558
GP GP P P+ RG P GP G + + R P G P
Sbjct: 1113 FGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP-QGPPGIGYEGRQGPPGPP 1167
Score = 32.7 bits (73), Expect = 1.0
Identities = 48/183 (26%), Positives = 58/183 (31%), Gaps = 33/183 (18%)
Query: 382 GGPGGRGCRRLDDLP-WDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDP-----SLSV 435
G PG G P +DS +F ESS G G P P G G P
Sbjct: 1020 GPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPF 1079
Query: 436 TLADIYRELYAFFGD--SLATRFGTGQPA---------PTAPRPPGDKKE---PAAAPDS 481
+ E+ GD + G+P P P PPG + P +S
Sbjct: 1080 DFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGES 1139
Query: 482 VRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRP-LPRVHR----ARGAPRQ 536
+R P P G + P G G G GP P P HR G P
Sbjct: 1140 IRGQP--------GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGP 1191
Query: 537 QGP 539
GP
Sbjct: 1192 PGP 1194
Score = 31.6 bits (70), Expect = 2.3
Identities = 38/136 (27%), Positives = 48/136 (35%), Gaps = 27/136 (19%)
Query: 403 QESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPA 462
+ GGG FGS LP PPG GP Y + G+S+ GQP
Sbjct: 1103 ERGEPGGGG--FFGSSLPGPPGPPGPRG----------YPGIPGPKGESI-----RGQPG 1145
Query: 463 PTAPR-PPGDKKEPAAAPDSVR--------KMPQLTASAIVSPHGDESPRGSGGG-GPAS 512
P P+ PPG E P P ++ P G P G G G +S
Sbjct: 1146 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGASS 1205
Query: 513 ASGPAASESRPLPRVH 528
A+ L +VH
Sbjct: 1206 GVRLWATRQAMLGQVH 1221
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 40.4 bits (93), Expect = 0.005
Identities = 50/160 (31%), Positives = 61/160 (38%), Gaps = 19/160 (11%)
Query: 417 SGLPLP---PGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKK 473
SG LP P PS T + + +F ++ + G TAP D
Sbjct: 51 SGAALPTSSPSSQSRRLPSRLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPD-- 108
Query: 474 EPAAAPDSVRKMPQLTASAIVSPHGDESPRGSG--GGGP-----ASASGPAASES----R 522
PA DS+ P + SA GD P+G G GGGP ASGPA + R
Sbjct: 109 -PAPLTDSLLAAPYIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRR 167
Query: 523 PLPRVHRARGAPRQQG-PGTGTRDVFQKSRFAPRGAPHFR 561
P R RG R+ G G G V P GAP R
Sbjct: 168 PTRRPRGTRGGARRPGVRGQGAAAVGPTGP-RPTGAPPSR 206
Score = 30.8 bits (68), Expect = 3.9
Identities = 35/119 (29%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 416 GSGLPLPPGG--AGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPA--PTAPRPPGD 471
G G LPP G +GP S R G G G A PT PRP G
Sbjct: 143 GGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTG- 201
Query: 472 KKEPAAAPDSVRKMPQLTASAIVSPHGDES-----PRGSGGGGPASASGPAASESRPLP 525
AP S R P + SPH P G P + PA++ P P
Sbjct: 202 ------APPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAP 254
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 40.4 bits (93), Expect = 0.005
Identities = 50/160 (31%), Positives = 61/160 (38%), Gaps = 19/160 (11%)
Query: 417 SGLPLP---PGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKK 473
SG LP P PS T + + +F ++ + G TAP D
Sbjct: 51 SGAALPTSSPSSQSRRLPSRLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPD-- 108
Query: 474 EPAAAPDSVRKMPQLTASAIVSPHGDESPRGSG--GGGP-----ASASGPAASES----R 522
PA DS+ P + SA GD P+G G GGGP ASGPA + R
Sbjct: 109 -PAPLTDSLLAAPYIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRR 167
Query: 523 PLPRVHRARGAPRQQG-PGTGTRDVFQKSRFAPRGAPHFR 561
P R RG R+ G G G V P GAP R
Sbjct: 168 PTRRPRGTRGGARRPGVRGQGAAAVGPTGP-RPTGAPPSR 206
Score = 30.8 bits (68), Expect = 3.9
Identities = 35/119 (29%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 416 GSGLPLPPGG--AGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPA--PTAPRPPGD 471
G G LPP G +GP S R G G G A PT PRP G
Sbjct: 143 GGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTG- 201
Query: 472 KKEPAAAPDSVRKMPQLTASAIVSPHGDES-----PRGSGGGGPASASGPAASESRPLP 525
AP S R P + SPH P G P + PA++ P P
Sbjct: 202 ------APPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAP 254
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 40.4 bits (93), Expect = 0.005
Identities = 43/146 (29%), Positives = 57/146 (39%), Gaps = 26/146 (17%)
Query: 460 QPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSP-HGDESPRGSGGGGPAS------ 512
+PAP A PP ++ PAAA +L+A A P P+G GGG AS
Sbjct: 49 RPAPAAAHPPAPRERPAAA--------RLSALAAAQPRRRSPGPQGGGGGDIASPLPPAL 100
Query: 513 -----ASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFA----PRGAPHFRFI 563
+ PAA PLP + PR P R V S A P P +
Sbjct: 101 QPRGAPAVPAAPSPGPLP-ARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGS 159
Query: 564 IAGRQAGRRCRGRLFQTAFPAPYGPS 589
+ R+ +R R R + P GP+
Sbjct: 160 VTAREQEQRPRSRR-RAGAPEALGPA 184
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 40.4 bits (93), Expect = 0.005
Identities = 30/106 (28%), Positives = 36/106 (33%)
Query: 404 ESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAP 463
+ + GGG LP PP +DP L D F + G
Sbjct: 539 KGTGGGGLPAPPDDFLPPPPPPPPLDDPELPPPPPDFMEPPPDFVPPPPPSYAGIAGSEL 598
Query: 464 TAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGG 509
P PP PA PDS R P + V P E+P GG G
Sbjct: 599 PPPPPPPPAPAPAPVPDSARPPPAVAKRPPVPPKRQENPGHPGGAG 644
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 40.4 bits (93), Expect = 0.005
Identities = 55/201 (27%), Positives = 76/201 (37%), Gaps = 37/201 (18%)
Query: 401 LFQESSSG--GGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGT 458
L QE +S G A + GLP+P G + S +LAD Y D T G
Sbjct: 560 LLQEFASRPLGAAPQAEHQGLPVPGSPGGQKWVSRWASLADSY-------SDPGLTEDGL 612
Query: 459 GQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAA 518
G+ G + E + R++PQL + SP G ES R SG G P S +
Sbjct: 613 GRR--------GGEPEGSLPVRMRRRLPQLPSERADSPAGPESSRRSGPGPPELDSEQPS 664
Query: 519 ----SESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCR 574
E + A G+ +GP G + R G R GR++ R
Sbjct: 665 RLFGQEELDPDSLSDASGSDGGRGPEPGVEPQDSRRRSPQEGPTWSR----GRRSPR--- 717
Query: 575 GRLFQTAFPAPYGPSPASRYV 595
AP P+PAS ++
Sbjct: 718 ---------APGEPTPASFFI 729
Score = 36.2 bits (82), Expect = 0.093
Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 451 SLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGP 510
+++ R G P+PT P+P +KE + +P + + +A+VS S R GP
Sbjct: 891 TVSLRSGKSGPSPTTPQPLRAQKEMSPSPPAAQ---DPGGTALVSAREQSSERQHHPLGP 947
Query: 511 ASASGPAASESRPLPRVHRARGA----PRQQGPGTG---TRDVFQKSRFAPRGAPHFRFI 563
+ R HR RG+ ++GP + DV + P
Sbjct: 948 TDMGRGEPVRRSAIRRGHRPRGSLDWPSEERGPVLAHLPSSDVMASNHETPEATG----- 1002
Query: 564 IAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQ 596
AGR RR PA PSPA+R Q
Sbjct: 1003 -AGRLGSRR---------KPAAPPPSPAAREEQ 1025
Score = 34.3 bits (77), Expect = 0.35
Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 4/160 (2%)
Query: 454 TRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLT--ASAIVSPHGDESPRGSGGGGPA 511
T G G+P + G + + S + P L S+ V E+P +G G
Sbjct: 948 TDMGRGEPVRRSAIRRGHRPRGSLDWPSEERGPVLAHLPSSDVMASNHETPEATGAGRLG 1007
Query: 512 SASGPAASESRPLPRVHRAR-GAPRQQGPGTGTRDVFQKSRFAPRGAPHFRFIIAGRQAG 570
S PAA P R ++R A Q+GP TR + R + R +
Sbjct: 1008 SRRKPAAPPPSPAAREEQSRSSASSQKGPQALTRSNSLSTPRPTRASRLRRARLGDASDT 1067
Query: 571 RRCRGRLFQTAFPAPYGPSPASRYVQKLPMIGRTSRPARR 610
G P P G PA+ +KL + + P +R
Sbjct: 1068 EAADGERGSLGNPEPVG-RPAAEQAKKLSRLDILAMPRKR 1106
Score = 29.6 bits (65), Expect = 8.7
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 29/144 (20%)
Query: 453 ATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQ-LTASAIVSPH-------------G 498
A R G+ + P P ++E + + S +K PQ LT S +S G
Sbjct: 1003 AGRLGSRRKPAAPPPSPAAREEQSRSSASSQKGPQALTRSNSLSTPRPTRASRLRRARLG 1062
Query: 499 D----ESPRGSGG--GGPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRF 552
D E+ G G G P PAA +++ L R+ ++ G TGT D
Sbjct: 1063 DASDTEAADGERGSLGNPEPVGRPAAEQAKKLSRLDILAMPRKRAGSFTGTSD------- 1115
Query: 553 APRGAPHFRFIIAGRQAGRRCRGR 576
P AP R +GR C R
Sbjct: 1116 -PEAAP-ARTSFSGRSVELCCASR 1137
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo
sapiens]
Length = 1554
Score = 40.4 bits (93), Expect = 0.005
Identities = 55/201 (27%), Positives = 76/201 (37%), Gaps = 37/201 (18%)
Query: 401 LFQESSSG--GGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGT 458
L QE +S G A + GLP+P G + S +LAD Y D T G
Sbjct: 630 LLQEFASRPLGAAPQAEHQGLPVPGSPGGQKWVSRWASLADSY-------SDPGLTEDGL 682
Query: 459 GQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAA 518
G+ G + E + R++PQL + SP G ES R SG G P S +
Sbjct: 683 GRR--------GGEPEGSLPVRMRRRLPQLPSERADSPAGPESSRRSGPGPPELDSEQPS 734
Query: 519 ----SESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCR 574
E + A G+ +GP G + R G R GR++ R
Sbjct: 735 RLFGQEELDPDSLSDASGSDGGRGPEPGVEPQDSRRRSPQEGPTWSR----GRRSPR--- 787
Query: 575 GRLFQTAFPAPYGPSPASRYV 595
AP P+PAS ++
Sbjct: 788 ---------APGEPTPASFFI 799
Score = 36.2 bits (82), Expect = 0.093
Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 451 SLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGP 510
+++ R G P+PT P+P +KE + +P + + +A+VS S R GP
Sbjct: 961 TVSLRSGKSGPSPTTPQPLRAQKEMSPSPPAAQ---DPGGTALVSAREQSSERQHHPLGP 1017
Query: 511 ASASGPAASESRPLPRVHRARGA----PRQQGPGTG---TRDVFQKSRFAPRGAPHFRFI 563
+ R HR RG+ ++GP + DV + P
Sbjct: 1018 TDMGRGEPVRRSAIRRGHRPRGSLDWPSEERGPVLAHLPSSDVMASNHETPEATG----- 1072
Query: 564 IAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQ 596
AGR RR PA PSPA+R Q
Sbjct: 1073 -AGRLGSRR---------KPAAPPPSPAAREEQ 1095
Score = 34.3 bits (77), Expect = 0.35
Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 4/160 (2%)
Query: 454 TRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLT--ASAIVSPHGDESPRGSGGGGPA 511
T G G+P + G + + S + P L S+ V E+P +G G
Sbjct: 1018 TDMGRGEPVRRSAIRRGHRPRGSLDWPSEERGPVLAHLPSSDVMASNHETPEATGAGRLG 1077
Query: 512 SASGPAASESRPLPRVHRAR-GAPRQQGPGTGTRDVFQKSRFAPRGAPHFRFIIAGRQAG 570
S PAA P R ++R A Q+GP TR + R + R +
Sbjct: 1078 SRRKPAAPPPSPAAREEQSRSSASSQKGPQALTRSNSLSTPRPTRASRLRRARLGDASDT 1137
Query: 571 RRCRGRLFQTAFPAPYGPSPASRYVQKLPMIGRTSRPARR 610
G P P G PA+ +KL + + P +R
Sbjct: 1138 EAADGERGSLGNPEPVG-RPAAEQAKKLSRLDILAMPRKR 1176
Score = 29.6 bits (65), Expect = 8.7
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 29/144 (20%)
Query: 453 ATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQ-LTASAIVSPH-------------G 498
A R G+ + P P ++E + + S +K PQ LT S +S G
Sbjct: 1073 AGRLGSRRKPAAPPPSPAAREEQSRSSASSQKGPQALTRSNSLSTPRPTRASRLRRARLG 1132
Query: 499 D----ESPRGSGG--GGPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRF 552
D E+ G G G P PAA +++ L R+ ++ G TGT D
Sbjct: 1133 DASDTEAADGERGSLGNPEPVGRPAAEQAKKLSRLDILAMPRKRAGSFTGTSD------- 1185
Query: 553 APRGAPHFRFIIAGRQAGRRCRGR 576
P AP R +GR C R
Sbjct: 1186 -PEAAP-ARTSFSGRSVELCCASR 1207
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 40.0 bits (92), Expect = 0.006
Identities = 43/145 (29%), Positives = 56/145 (38%), Gaps = 26/145 (17%)
Query: 460 QPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSP-HGDESPRGSGGGGPAS------ 512
+PAP A PP ++ PAAA +L+A A P P+G GGG AS
Sbjct: 49 RPAPAAAHPPAPRERPAAA--------RLSALAAAQPRRRSPGPQGGGGGDIASPLPPAL 100
Query: 513 -----ASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFA----PRGAPHFRFI 563
+ PAA PLP + PR P R V S A P P +
Sbjct: 101 QPRGAPAVPAAPSPGPLP-ARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGS 159
Query: 564 IAGRQAGRRCRGRLFQTAFPAPYGP 588
+ R+ +R R R + P GP
Sbjct: 160 VTAREQEQRPRSRR-RAGAPEALGP 183
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 40.0 bits (92), Expect = 0.006
Identities = 50/160 (31%), Positives = 61/160 (38%), Gaps = 19/160 (11%)
Query: 417 SGLPLP---PGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKK 473
SG LP P PS T + + +F ++ + G TAP D
Sbjct: 51 SGAALPTSSPSSQSRRLPSHLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPD-- 108
Query: 474 EPAAAPDSVRKMPQLTASAIVSPHGDESPRGSG--GGGP-----ASASGPAASES----R 522
PA DS+ P + SA GD P+G G GGGP ASGPA + R
Sbjct: 109 -PAPLTDSLLAAPYIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRR 167
Query: 523 PLPRVHRARGAPRQQG-PGTGTRDVFQKSRFAPRGAPHFR 561
P R RG R+ G G G V P GAP R
Sbjct: 168 PTRRPRGTRGGARRPGVRGQGAAAVGPTGP-RPTGAPPSR 206
Score = 30.8 bits (68), Expect = 3.9
Identities = 35/119 (29%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 416 GSGLPLPPGG--AGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPA--PTAPRPPGD 471
G G LPP G +GP S R G G G A PT PRP G
Sbjct: 143 GGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTG- 201
Query: 472 KKEPAAAPDSVRKMPQLTASAIVSPHGDES-----PRGSGGGGPASASGPAASESRPLP 525
AP S R P + SPH P G P + PA++ P P
Sbjct: 202 ------APPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAP 254
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 39.7 bits (91), Expect = 0.008
Identities = 46/146 (31%), Positives = 59/146 (40%), Gaps = 21/146 (14%)
Query: 461 PAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPA-SASGPAAS 519
P PTA GD+ P S + P++ + P ESPR GG ASGP S
Sbjct: 2342 PGPTAEPLAGDR--PPTGGHSSGRSPRMERR-VPGPARSESPRACRHGGARWPASGPHVS 2398
Query: 520 ESRPLPRVH---RARGAPRQQGPGTGTRDVFQKSRF-APRGAPHFRFIIAGRQAGRRCRG 575
E P PR H R GPG+G + + AP H A G
Sbjct: 2399 EGPPGPRHHGYYRGSDYDEADGPGSGGGEEAMAGAYDAPPPVRH---------ASSGATG 2449
Query: 576 RLFQTAFPAPYGPSPA--SRYVQKLP 599
R +T P GP+ A SR+ ++LP
Sbjct: 2450 RSPRT--PRASGPACASPSRHGRRLP 2473
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 39.7 bits (91), Expect = 0.008
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 19/76 (25%)
Query: 460 QPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSP-HGDESPRGSGGGGPASASGPAA 518
+PAP A PP ++ PAAA +L+A A P P+G GGG AS
Sbjct: 49 RPAPAAAHPPAPRERPAAA--------RLSALAAAQPRRRSPGPQGGGGGDIAS------ 94
Query: 519 SESRPLPRVHRARGAP 534
PLP + RGAP
Sbjct: 95 ----PLPPALQPRGAP 106
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 39.3 bits (90), Expect = 0.011
Identities = 43/171 (25%), Positives = 52/171 (30%), Gaps = 31/171 (18%)
Query: 380 NRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLAD 439
+RG PG G + P G P GLP G GP
Sbjct: 289 HRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGP----------- 337
Query: 440 IYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGD 499
+ R GQP P P P P + + + P G
Sbjct: 338 ---------AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGA 388
Query: 500 ESPRGS----GGGGPASASG-------PAASESRPLPRVHRARGAPRQQGP 539
+ PRG G GPA ASG P A S P + A G P +GP
Sbjct: 389 QGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP 439
Score = 39.3 bits (90), Expect = 0.011
Identities = 61/222 (27%), Positives = 76/222 (34%), Gaps = 60/222 (27%)
Query: 381 RGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPG----GAGPEDPSLSVT 436
RG PG G P + E G PS GLP PPG G P D +
Sbjct: 629 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVP-- 686
Query: 437 LADIYRELYAFFGDSLATRFGTGQPAPTAPRP----PGDKKEPAA-APDSVRKMPQLTAS 491
G++ G P PR PG++ P A R +P
Sbjct: 687 ------------GEA-------GAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP----- 722
Query: 492 AIVSPHGDESPRG-SGGGGPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKS 550
G + P+G SG GP A GP + P RGA GP DV +K
Sbjct: 723 ---GTPGTDGPKGASGPAGPPGAQGPPGLQGMP-----GERGAAGIAGPKGDRGDVGEK- 773
Query: 551 RFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPAS 592
P GAP G+ GR G + P GP+ A+
Sbjct: 774 --GPEGAP-------GKDGGRGLTGPI------GPPGPAGAN 800
Score = 35.4 bits (80), Expect = 0.16
Identities = 42/142 (29%), Positives = 51/142 (35%), Gaps = 22/142 (15%)
Query: 459 GQPAPTAPR-PPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGG-GGPASASGP 516
G P PR PPG P A + Q I G++ P+G G GP A GP
Sbjct: 429 GAPGFPGPRGPPG----PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGP 484
Query: 517 AASESRPLPRVHRARGAPRQQGP--------GTGTRDV-FQKSRFAPRGAPHFR--FIIA 565
A E + ARG P GP G R Q P+GAP R +A
Sbjct: 485 AGEEGK-----RGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA 539
Query: 566 GRQAGRRCRGRLFQTAFPAPYG 587
G + GR + P G
Sbjct: 540 GPKGANGDPGRPGEPGLPGARG 561
Score = 33.9 bits (76), Expect = 0.46
Identities = 55/219 (25%), Positives = 71/219 (32%), Gaps = 34/219 (15%)
Query: 381 RGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADI 440
RG PG +G + LP + G P SG PPG GP P L +
Sbjct: 707 RGSPGAQGLQGPRGLP---------GTPGTDGPKGASGPAGPPGAQGP--PGLQGMPGE- 754
Query: 441 YRELYAFFGDSLATRFGTGQPAPT-APRPPGDK--KEPAAAPDSVRKMPQLTASAIVSPH 497
R G R G+ P AP G + P P + P
Sbjct: 755 -RGAAGIAGPK-GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPA 812
Query: 498 GDESPRGSGGG-------GPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKS 550
G RG+ G GPA +GP ++ +P GA +QG D
Sbjct: 813 GSAGARGAPGERGETGPPGPAGFAGPPGADGQP--------GAKGEQGEAGQKGDAGAPG 864
Query: 551 RFAPRGA--PHFRFIIAGRQAGRRCRGRLFQTAFPAPYG 587
P GA P + G + R +G T FP G
Sbjct: 865 PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG 903
Score = 33.5 bits (75), Expect = 0.60
Identities = 34/129 (26%), Positives = 44/129 (34%), Gaps = 42/129 (32%)
Query: 418 GLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAA 477
GLP PPG +G + S G P+ PR P
Sbjct: 1140 GLPGPPGPSGDQGAS--------------------------GPAGPSGPRGP-------- 1165
Query: 478 APDSVRKMPQLTASAIVSPHGDESPRG----SGGGGPASASGPAASESRPLPRVHRARGA 533
P V + A+ I P G PRG +G GP GP P P + + A
Sbjct: 1166 -PGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFA 1224
Query: 534 ---PRQQGP 539
PR++GP
Sbjct: 1225 GLGPREKGP 1233
Score = 32.0 bits (71), Expect = 1.7
Identities = 55/195 (28%), Positives = 64/195 (32%), Gaps = 26/195 (13%)
Query: 407 SGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAP 466
+ G P +G P PPG GP GDS G+P P
Sbjct: 901 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGAR----------GDS-GPPGRAGEPGLQGP 949
Query: 467 R-PPGDKKEPA-AAPDSVRKMPQLTASA----IVSPHGDESPRGSGG-GGPASASGPAAS 519
PPG+K EP P P A IV G RG G GP+ G +
Sbjct: 950 AGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGA 1009
Query: 520 ESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGA--PHFRFIIAGRQAGRRCRGRL 577
P RG P GP T + R GA P R AG + R G +
Sbjct: 1010 -----PGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAV 1064
Query: 578 FQTAFPAPYG-PSPA 591
P P G P PA
Sbjct: 1065 GAPGAPGPPGSPGPA 1079
Score = 31.6 bits (70), Expect = 2.3
Identities = 43/163 (26%), Positives = 53/163 (32%), Gaps = 40/163 (24%)
Query: 381 RGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADI 440
RG PG RG D L E G A P +G P PG +P L
Sbjct: 509 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPG-----EPGLP------ 557
Query: 441 YRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDE 500
R TG+P P+ K P+ AP P G +
Sbjct: 558 ------------GARGLTGRPGDAGPQ---GKVGPSGAPGE---------DGRPGPPGPQ 593
Query: 501 SPRGSGG----GGPASASG-PAASESRPLPRVHRARGAPRQQG 538
RG G GP A+G P + + LP RG P + G
Sbjct: 594 GARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDG 636
Score = 31.2 bits (69), Expect = 3.0
Identities = 37/131 (28%), Positives = 46/131 (35%), Gaps = 12/131 (9%)
Query: 418 GLPLPPGGAGPEDP-----SLSVTLADIYRELYAFFGDSLATRFG-TGQPAPTAPRPPGD 471
G P PPG GP P + + +A + E G L G G P P P
Sbjct: 159 GNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAG--GAQLGVMQGPMGPMGPRGPPGPAG 216
Query: 472 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGS-GGGGPASASGPAASESRPLPRVHRA 530
P + + + S + P G P G G G A G A P P+ A
Sbjct: 217 APGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ--GA 274
Query: 531 RGAPRQQG-PG 540
RG P G PG
Sbjct: 275 RGFPGTPGLPG 285
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 39.3 bits (90), Expect = 0.011
Identities = 43/171 (25%), Positives = 52/171 (30%), Gaps = 31/171 (18%)
Query: 380 NRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLAD 439
+RG PG G + P G P GLP G GP
Sbjct: 220 HRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGP----------- 268
Query: 440 IYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGD 499
+ R GQP P P P P + + + P G
Sbjct: 269 ---------AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGA 319
Query: 500 ESPRGS----GGGGPASASG-------PAASESRPLPRVHRARGAPRQQGP 539
+ PRG G GPA ASG P A S P + A G P +GP
Sbjct: 320 QGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP 370
Score = 39.3 bits (90), Expect = 0.011
Identities = 61/222 (27%), Positives = 76/222 (34%), Gaps = 60/222 (27%)
Query: 381 RGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPG----GAGPEDPSLSVT 436
RG PG G P + E G PS GLP PPG G P D +
Sbjct: 560 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVP-- 617
Query: 437 LADIYRELYAFFGDSLATRFGTGQPAPTAPRP----PGDKKEPAA-APDSVRKMPQLTAS 491
G++ G P PR PG++ P A R +P
Sbjct: 618 ------------GEA-------GAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP----- 653
Query: 492 AIVSPHGDESPRG-SGGGGPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKS 550
G + P+G SG GP A GP + P RGA GP DV +K
Sbjct: 654 ---GTPGTDGPKGASGPAGPPGAQGPPGLQGMP-----GERGAAGIAGPKGDRGDVGEK- 704
Query: 551 RFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPAS 592
P GAP G+ GR G + P GP+ A+
Sbjct: 705 --GPEGAP-------GKDGGRGLTGPI------GPPGPAGAN 731
Score = 35.4 bits (80), Expect = 0.16
Identities = 42/142 (29%), Positives = 51/142 (35%), Gaps = 22/142 (15%)
Query: 459 GQPAPTAPR-PPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGG-GGPASASGP 516
G P PR PPG P A + Q I G++ P+G G GP A GP
Sbjct: 360 GAPGFPGPRGPPG----PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGP 415
Query: 517 AASESRPLPRVHRARGAPRQQGP--------GTGTRDV-FQKSRFAPRGAPHFR--FIIA 565
A E + ARG P GP G R Q P+GAP R +A
Sbjct: 416 AGEEGK-----RGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA 470
Query: 566 GRQAGRRCRGRLFQTAFPAPYG 587
G + GR + P G
Sbjct: 471 GPKGANGDPGRPGEPGLPGARG 492
Score = 33.9 bits (76), Expect = 0.46
Identities = 55/219 (25%), Positives = 71/219 (32%), Gaps = 34/219 (15%)
Query: 381 RGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADI 440
RG PG +G + LP + G P SG PPG GP P L +
Sbjct: 638 RGSPGAQGLQGPRGLP---------GTPGTDGPKGASGPAGPPGAQGP--PGLQGMPGE- 685
Query: 441 YRELYAFFGDSLATRFGTGQPAPT-APRPPGDK--KEPAAAPDSVRKMPQLTASAIVSPH 497
R G R G+ P AP G + P P + P
Sbjct: 686 -RGAAGIAGPK-GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPA 743
Query: 498 GDESPRGSGGG-------GPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKS 550
G RG+ G GPA +GP ++ +P GA +QG D
Sbjct: 744 GSAGARGAPGERGETGPPGPAGFAGPPGADGQP--------GAKGEQGEAGQKGDAGAPG 795
Query: 551 RFAPRGA--PHFRFIIAGRQAGRRCRGRLFQTAFPAPYG 587
P GA P + G + R +G T FP G
Sbjct: 796 PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG 834
Score = 33.5 bits (75), Expect = 0.60
Identities = 34/129 (26%), Positives = 44/129 (34%), Gaps = 42/129 (32%)
Query: 418 GLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAA 477
GLP PPG +G + S G P+ PR P
Sbjct: 1071 GLPGPPGPSGDQGAS--------------------------GPAGPSGPRGP-------- 1096
Query: 478 APDSVRKMPQLTASAIVSPHGDESPRG----SGGGGPASASGPAASESRPLPRVHRARGA 533
P V + A+ I P G PRG +G GP GP P P + + A
Sbjct: 1097 -PGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFA 1155
Query: 534 ---PRQQGP 539
PR++GP
Sbjct: 1156 GLGPREKGP 1164
Score = 32.0 bits (71), Expect = 1.7
Identities = 55/195 (28%), Positives = 64/195 (32%), Gaps = 26/195 (13%)
Query: 407 SGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAP 466
+ G P +G P PPG GP GDS G+P P
Sbjct: 832 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGAR----------GDS-GPPGRAGEPGLQGP 880
Query: 467 R-PPGDKKEPA-AAPDSVRKMPQLTASA----IVSPHGDESPRGSGG-GGPASASGPAAS 519
PPG+K EP P P A IV G RG G GP+ G +
Sbjct: 881 AGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGA 940
Query: 520 ESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGA--PHFRFIIAGRQAGRRCRGRL 577
P RG P GP T + R GA P R AG + R G +
Sbjct: 941 -----PGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAV 995
Query: 578 FQTAFPAPYG-PSPA 591
P P G P PA
Sbjct: 996 GAPGAPGPPGSPGPA 1010
Score = 31.6 bits (70), Expect = 2.3
Identities = 43/163 (26%), Positives = 53/163 (32%), Gaps = 40/163 (24%)
Query: 381 RGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADI 440
RG PG RG D L E G A P +G P PG +P L
Sbjct: 440 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPG-----EPGLP------ 488
Query: 441 YRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDE 500
R TG+P P+ K P+ AP P G +
Sbjct: 489 ------------GARGLTGRPGDAGPQ---GKVGPSGAPGE---------DGRPGPPGPQ 524
Query: 501 SPRGSGG----GGPASASG-PAASESRPLPRVHRARGAPRQQG 538
RG G GP A+G P + + LP RG P + G
Sbjct: 525 GARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDG 567
Score = 31.2 bits (69), Expect = 3.0
Identities = 37/131 (28%), Positives = 46/131 (35%), Gaps = 12/131 (9%)
Query: 418 GLPLPPGGAGPEDP-----SLSVTLADIYRELYAFFGDSLATRFG-TGQPAPTAPRPPGD 471
G P PPG GP P + + +A + E G L G G P P P
Sbjct: 90 GNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAG--GAQLGVMQGPMGPMGPRGPPGPAG 147
Query: 472 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGS-GGGGPASASGPAASESRPLPRVHRA 530
P + + + S + P G P G G G A G A P P+ A
Sbjct: 148 APGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ--GA 205
Query: 531 RGAPRQQG-PG 540
RG P G PG
Sbjct: 206 RGFPGTPGLPG 216
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 39.3 bits (90), Expect = 0.011
Identities = 63/247 (25%), Positives = 87/247 (35%), Gaps = 32/247 (12%)
Query: 374 AQAAEPNRGGPGGRGCRRL--DDLPWDSLLFQESSSGGGAEPSFGS---GLPLPPGGAGP 428
A A RGG G G P S SSS A+ FG+ G P GG P
Sbjct: 228 AYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTP 287
Query: 429 EDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQL 488
+ P+ + TL +L + + G P+ G K PA
Sbjct: 288 Q-PTATPTL----NQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAA 342
Query: 489 TASAIV--------SPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAP------ 534
A+A S H SP SGGGG A P S P+ ++ + R P
Sbjct: 343 AAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTP--QPSSPMDQMGKMRPQPYGGTNP 400
Query: 535 --RQQGPGTGTRD--VFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSP 590
+QQGP +G + + + + + + GR + G L T PYG
Sbjct: 401 YSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGR--AQSAMGGLSYTQQIPPYGQQG 458
Query: 591 ASRYVQK 597
S Y Q+
Sbjct: 459 PSGYGQQ 465
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 39.3 bits (90), Expect = 0.011
Identities = 63/247 (25%), Positives = 87/247 (35%), Gaps = 32/247 (12%)
Query: 374 AQAAEPNRGGPGGRGCRRL--DDLPWDSLLFQESSSGGGAEPSFGS---GLPLPPGGAGP 428
A A RGG G G P S SSS A+ FG+ G P GG P
Sbjct: 228 AYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTP 287
Query: 429 EDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQL 488
+ P+ + TL +L + + G P+ G K PA
Sbjct: 288 Q-PTATPTL----NQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAA 342
Query: 489 TASAIV--------SPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAP------ 534
A+A S H SP SGGGG A P S P+ ++ + R P
Sbjct: 343 AAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTP--QPSSPMDQMGKMRPQPYGGTNP 400
Query: 535 --RQQGPGTGTRD--VFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSP 590
+QQGP +G + + + + + + GR + G L T PYG
Sbjct: 401 YSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGR--AQSAMGGLSYTQQIPPYGQQG 458
Query: 591 ASRYVQK 597
S Y Q+
Sbjct: 459 PSGYGQQ 465
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 38.9 bits (89), Expect = 0.014
Identities = 35/137 (25%), Positives = 50/137 (36%), Gaps = 28/137 (20%)
Query: 457 GTGQPAPTAPRPPGDKK---EPAAAPDSVRKMPQLTASAIV--------SPHGDESPRGS 505
G +P P P PP EPA P + R +P L AS P G+ +PR
Sbjct: 18 GDAEPPPQPPPPPPPTPPPGEPAPVPAAPRYLPPLPASPETPERAAGPSEPLGEVAPRCR 77
Query: 506 G-------------GGGPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRF 552
G G +A+G + R LP A+G P + G G ++ R
Sbjct: 78 GADELPPPPLPLQPAGQEVAAAGDSGEGPRRLPEAAAAKGGPGESEAGAGG----ERERR 133
Query: 553 APRGAPHFRFIIAGRQA 569
P R + + R +
Sbjct: 134 GAGDQPETRSVCSSRSS 150
>gi|226371735 iroquois homeobox 3 [Homo sapiens]
Length = 501
Score = 38.5 bits (88), Expect = 0.019
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 462 APTAPRPPG--DKKEPAAAPDSVRKMPQLTASAIVSPHGDE---SPRGSGGGGPASASGP 516
+P+ P PP D PA AP S + P++ + A + D SP G+GG P +A P
Sbjct: 321 SPSLPSPPVSLDPCAPAPAPASALQKPKIWSLAETATSPDNPRRSPPGAGGSPPGAAVAP 380
Query: 517 AASESRP---LPRVHRARGAPRQQGPGTGTR 544
+A + P HR AP + P R
Sbjct: 381 SALQLSPAAAAAAAHRLVSAPLGKFPAWTNR 411
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 38.1 bits (87), Expect = 0.024
Identities = 48/177 (27%), Positives = 59/177 (33%), Gaps = 58/177 (32%)
Query: 417 SGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPA 476
+G P PPG GP+ P+ G P P P PPG++ P
Sbjct: 990 TGPPGPPGVVGPQGPT-----------------GETGPMGERGHPGP--PGPPGEQGLPG 1030
Query: 477 AA-------------------PDSVRKMP----------QLTASAIVSPHGDESPRGS-G 506
A P +R P L P G P GS G
Sbjct: 1031 LAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPG 1090
Query: 507 GGGPASASGPAASESRPLPR----VHRARGAPRQQGP-GTGTRDVFQKSRFAPRGAP 558
GPA A+GP RP P+ +GAP ++GP G RD Q P G P
Sbjct: 1091 ERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQ----GPVGLP 1143
Score = 32.0 bits (71), Expect = 1.7
Identities = 42/173 (24%), Positives = 50/173 (28%), Gaps = 34/173 (19%)
Query: 381 RGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADI 440
RG PG G + D +D L G +P SG P PPG G V
Sbjct: 618 RGMPGQTGPK--GDRGFDGLAGLPGEKGHRGDPG-PSGPPGPPGDDGERGDDGEV----- 669
Query: 441 YRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDE 500
R G+P P P P P Q V P G+
Sbjct: 670 ------------GPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEP 717
Query: 501 SPRGSGGG-------------GPASASGPAASESRP-LPRVHRARGAPRQQGP 539
P G G GP GP P +P G P ++GP
Sbjct: 718 GPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGP 770
Score = 29.6 bits (65), Expect = 8.7
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 459 GQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAA 518
G P PT P+ P + P+ A Q + GDE PRG G GP
Sbjct: 1177 GPPGPTGPQGPIGQPGPSGADGEPGPRGQ---QGLFGQKGDEGPRGFPG-----PPGPVG 1228
Query: 519 SESRPLPRVHRAR-GAPRQQGP 539
+ P P + G Q GP
Sbjct: 1229 LQGLPGPPGEKGETGDVGQMGP 1250
Score = 29.6 bits (65), Expect = 8.7
Identities = 57/221 (25%), Positives = 70/221 (31%), Gaps = 21/221 (9%)
Query: 378 EPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLP---PGGAGPEDPSLS 434
E RG PG G L LP E+ G P G P PG GP+ P
Sbjct: 1215 EGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGG 1274
Query: 435 VTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIV 494
+ E G G P P P G++ E + S P
Sbjct: 1275 IGNPGAVGEKGEPGEAGEPGLPGEGGP----PGPKGERGEKGESGPSGAAGPP----GPK 1326
Query: 495 SPHGDESPRGS-------GGGGPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVF 547
P GD+ P+GS G GP GPA + P + G P Q G T +
Sbjct: 1327 GPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDK--GDDGEPGQTGSPGPTGEPG 1384
Query: 548 QKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGP 588
RG P GRQ + +G P GP
Sbjct: 1385 PSGPPGKRGPPG-PAGPEGRQGEKGAKGEAGLEGPPGKTGP 1424
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 37.7 bits (86), Expect = 0.032
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 457 GTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGG-GGPASASG 515
G G AP P PG + P +AP S + P+ T + G + G+G GP A+
Sbjct: 288 GVGSGAPGEPAEPGRARAPRSAPSS--REPRQTKRRV----GSRARAGAGAVTGPCPAAA 341
Query: 516 PAASESRPLPRVHRARGAPRQQGP 539
A S P PR + G R+ P
Sbjct: 342 QGARGSWPSPRCLPSDGGAREAPP 365
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 37.7 bits (86), Expect = 0.032
Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 20/145 (13%)
Query: 413 PSFGSGLPLPPGGAG----PEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRP 468
PS PLPP +G P P +++L+ L + R G P P + RP
Sbjct: 313 PSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPS------PGRSGP-LPPPPSERP 365
Query: 469 PGDKKEPAAAPDSVRKMPQLTASAIVS---PHGDESPRGSGGGGPASASGPAASESRPLP 525
P ++P + P ++ + S P + P SG P S P PLP
Sbjct: 366 PPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRP------PLP 419
Query: 526 RVHRARGAPRQQGPGTGTRDVFQKS 550
+ GAP P T R+ FQ S
Sbjct: 420 PDRPSAGAPPPPPPSTSIRNGFQDS 444
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 37.7 bits (86), Expect = 0.032
Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 20/145 (13%)
Query: 413 PSFGSGLPLPPGGAG----PEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRP 468
PS PLPP +G P P +++L+ L + R G P P + RP
Sbjct: 313 PSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPS------PGRSGP-LPPPPSERP 365
Query: 469 PGDKKEPAAAPDSVRKMPQLTASAIVS---PHGDESPRGSGGGGPASASGPAASESRPLP 525
P ++P + P ++ + S P + P SG P S P PLP
Sbjct: 366 PPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRP------PLP 419
Query: 526 RVHRARGAPRQQGPGTGTRDVFQKS 550
+ GAP P T R+ FQ S
Sbjct: 420 PDRPSAGAPPPPPPSTSIRNGFQDS 444
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,332,438
Number of Sequences: 37866
Number of extensions: 1553630
Number of successful extensions: 10261
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 482
Number of HSP's that attempted gapping in prelim test: 8612
Number of HSP's gapped (non-prelim): 1929
length of query: 622
length of database: 18,247,518
effective HSP length: 108
effective length of query: 514
effective length of database: 14,157,990
effective search space: 7277206860
effective search space used: 7277206860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.