Guide to the Human Genome
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Name: TAF6 Sequence: fasta or formatted (677aa) NCBI GI: 21536359
Description:

TBP-associated factor 6 isoform alpha

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [667aa] TBP-associated factor 6 isoform gamma
alt prot [667aa] TBP-associated factor 6 isoform delta
alt mRNA [677aa] TBP-associated factor 6 isoform alpha
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         59           3
 C cysteine            1.6         11           1
 D aspartate           3.2         22           1
 E glutamate           5.8         39           2
 F phenylalanine       1.9         13           1
 G glycine             6.5         44           3
 H histidine           1.6         11           1
 I isoleucine          4.6         31           2
 K lysine              6.2         42           2
 L leucine            10.0         68           3
 M methionine          1.6         11           1
 N asparagine          2.4         16           2
 P proline            10.9         74           3
 Q glutamine           5.9         40           2
 R arginine            4.1         28           1
 S serine              8.7         59           5
 T threonine           7.1         48           3
 V valine              6.4         43           2
 W tryptophan          0.6          4           1
 Y tyrosine            2.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBP-associated factor 6 isoform alpha 
TAF6                  1.000   TBP-associated factor 6 isoform alpha 
TAF6                  0.980   TBP-associated factor 6 isoform delta 
TAF6                  0.980   TBP-associated factor 6 isoform gamma 
TAF6L                 0.088   TAF6-like RNA polymerase II 
MUC2                  0.032   mucin 2 precursor 
PCLO                  0.028   piccolo isoform 2 
PCLO                  0.028   piccolo isoform 1 
NUP214                0.027   nucleoporin 214kDa 
LOC100294420          0.027   PREDICTED: similar to mucin 2 
MUC17                 0.027   mucin 17 
PRG4                  0.027   proteoglycan 4 isoform D 
PRG4                  0.027   proteoglycan 4 isoform C 
PRG4                  0.027   proteoglycan 4 isoform B 
PRG4                  0.027   proteoglycan 4 isoform A 
FLJ22184              0.026   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.026   nascent polypeptide-associated complex alpha subuni...
TAF4                  0.026   TBP-associated factor 4 
SFPQ                  0.026   splicing factor proline/glutamine rich (polypyrimidin...
CIC                   0.025   capicua homolog 
MED15                 0.024   mediator complex subunit 15 isoform b 
DIAPH1                0.024   diaphanous 1 isoform 2 
DIAPH1                0.024   diaphanous 1 isoform 1 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
RAPH1                 0.023   Ras association and pleckstrin homology domains 1 is...
BAT2D1                0.023   HBxAg transactivated protein 2 
CASKIN1               0.023   CASK interacting protein 1 
BCORL1                0.023   BCL6 co-repressor-like 1 
MUC7                  0.023   mucin 7, secreted precursor 
MUC7                  0.023   mucin 7, secreted precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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