Guide to the Human Genome
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Name: LOC729570 Sequence: fasta or formatted (324aa) NCBI GI: 113414226
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {324aa} PREDICTED: hypothetical protein
alt mRNA {324aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         29           3
 C cysteine            1.5          5           1
 D aspartate           2.5          8           1
 E glutamate           4.3         14           2
 F phenylalanine       2.2          7           1
 G glycine            11.1         36           3
 H histidine           2.2          7           1
 I isoleucine          2.5          8           2
 K lysine              5.2         17           2
 L leucine             9.0         29           2
 M methionine          0.6          2           1
 N asparagine          0.3          1           1
 P proline            12.7         41           3
 Q glutamine           2.8          9           2
 R arginine           11.4         37           3
 S serine             11.1         36           2
 T threonine           6.5         21           3
 V valine              2.5          8           2
 W tryptophan          1.9          6           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729570             1.000   PREDICTED: hypothetical protein 
LOC729570             0.997   PREDICTED: hypothetical protein 
CEL                   0.054   carboxyl ester lipase precursor 
PRB3                  0.051   proline-rich protein BstNI subfamily 3 precursor [H...
NACA                  0.047   nascent polypeptide-associated complex alpha subuni...
PRB4                  0.045   proline-rich protein BstNI subfamily 4 precursor [Ho...
PRB2                  0.043   proline-rich protein BstNI subfamily 2 
COL3A1                0.042   collagen type III alpha 1 preproprotein 
PRB1                  0.042   proline-rich protein BstNI subfamily 1 isoform 2 pre...
C17orf96              0.042   hypothetical protein LOC100170841 
PRB1                  0.040   proline-rich protein BstNI subfamily 1 isoform 3 pre...
COL1A1                0.039   alpha 1 type I collagen preproprotein 
COL10A1               0.039   type X collagen alpha 1 precursor 
WASL                  0.039   Wiskott-Aldrich syndrome gene-like protein 
PRB1                  0.039   proline-rich protein BstNI subfamily 1 isoform 1 pre...
SRRM1                 0.039   serine/arginine repetitive matrix 1 
CPSF6                 0.037   cleavage and polyadenylation specific factor 6, 68 ...
ZNF828                0.037   zinc finger protein 828 
SYDE1                 0.037   synapse defective 1, Rho GTPase, homolog 1 
CASKIN1               0.037   CASK interacting protein 1 
COL2A1                0.036   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.036   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A2                0.036   alpha 2 type V collagen preproprotein 
LOC100131102          0.036   PREDICTED: hypothetical protein 
COL7A1                0.036   alpha 1 type VII collagen precursor 
RBM42                 0.036   RNA binding motif protein 42 
COL5A1                0.034   alpha 1 type V collagen preproprotein 
LOC100131102          0.034   PREDICTED: hypothetical protein 
LOC100133305          0.034   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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