TAF6L 32592

Name: TAF6L	Sequence: fasta or formatted (622aa)		NCBI GI: 5453844
Description: TAF6-like RNA polymerase II		Referenced in: RNA Polymerase and General Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.0 62 3 C cysteine 1.6 10 2 D aspartate 4.7 29 2 E glutamate 5.0 31 2 F phenylalanine 2.9 18 2 G glycine 8.8 55 4 H histidine 2.7 17 1 I isoleucine 2.1 13 2 K lysine 3.2 20 2 L leucine 11.9 74 3 M methionine 1.3 8 1 N asparagine 1.9 12 1 P proline 8.0 50 2 Q glutamine 3.9 24 2 R arginine 8.4 52 2 S serine 8.2 51 3 T threonine 3.5 22 1 V valine 7.2 45 2 W tryptophan 1.1 7 1 Y tyrosine 3.5 22 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 TAF6-like RNA polymerase II TAF6 0.095 TBP-associated factor 6 isoform gamma TAF6 0.095 TBP-associated factor 6 isoform alpha TAF6 0.095 TBP-associated factor 6 isoform alpha TAF6 0.080 TBP-associated factor 6 isoform delta COL17A1 0.015 alpha 1 type XVII collagen NACA 0.014 nascent polypeptide-associated complex alpha subuni... COL18A1 0.013 alpha 1 type XVIII collagen isoform 3 precursor [Ho... COL18A1 0.013 alpha 1 type XVIII collagen isoform 2 precursor [Ho... COL18A1 0.013 alpha 1 type XVIII collagen isoform 1 precursor [Ho... LOC729570 0.012 PREDICTED: hypothetical protein LOC729570 0.012 PREDICTED: hypothetical protein LOC100131102 0.012 PREDICTED: hypothetical protein APBB1IP 0.012 amyloid beta (A4) precursor protein-binding, family ... KIAA0284 0.012 hypothetical protein LOC283638 isoform 2 KIAA0284 0.012 hypothetical protein LOC283638 isoform 1 LOC100131102 0.012 PREDICTED: hypothetical protein LOC729570 0.012 PREDICTED: hypothetical protein CACNA1A 0.012 calcium channel, alpha 1A subunit isoform 4 LOC100131102 0.012 PREDICTED: hypothetical protein COL2A1 0.011 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.011 collagen, type II, alpha 1 isoform 2 precursor [Hom... ARID1A 0.011 AT rich interactive domain 1A isoform a ARID1A 0.011 AT rich interactive domain 1A isoform b MARCH11 0.011 membrane-associated ring finger (C3HC4) 11 IRX3 0.011 iroquois homeobox 3 COL5A1 0.011 alpha 1 type V collagen preproprotein LOC100127930 0.011 PREDICTED: hypothetical protein WIPF1 0.011 WAS/WASL interacting protein family, member 1 [Homo... WIPF1 0.011 WAS/WASL interacting protein family, member 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.