TAF6 13321

Name: TAF6	Sequence: fasta or formatted (667aa)		NCBI GI: 21536357
Description: TBP-associated factor 6 isoform delta		Referenced in: RNA Polymerase and General Transcription Factors
Other entries for this name: alt prot [667aa] TBP-associated factor 6 isoform gamma alt prot [677aa] TBP-associated factor 6 isoform alpha alt prot [677aa] TBP-associated factor 6 isoform alpha
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.7 58 3 C cysteine 1.6 11 1 D aspartate 3.3 22 1 E glutamate 5.7 38 2 F phenylalanine 1.9 13 1 G glycine 6.6 44 3 H histidine 1.6 11 1 I isoleucine 4.3 29 2 K lysine 6.1 41 2 L leucine 10.2 68 3 M methionine 1.6 11 1 N asparagine 2.4 16 2 P proline 11.1 74 3 Q glutamine 5.8 39 2 R arginine 4.0 27 1 S serine 8.7 58 5 T threonine 7.2 48 3 V valine 6.3 42 2 W tryptophan 0.6 4 1 Y tyrosine 1.9 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 TBP-associated factor 6 isoform delta TAF6 0.994 TBP-associated factor 6 isoform alpha TAF6 0.994 TBP-associated factor 6 isoform alpha TAF6 0.973 TBP-associated factor 6 isoform gamma TAF6L 0.076 TAF6-like RNA polymerase II MUC2 0.032 mucin 2 precursor PCLO 0.028 piccolo isoform 2 PCLO 0.028 piccolo isoform 1 NUP214 0.028 nucleoporin 214kDa LOC100294420 0.028 PREDICTED: similar to mucin 2 MUC17 0.028 mucin 17 PRG4 0.028 proteoglycan 4 isoform D PRG4 0.028 proteoglycan 4 isoform C PRG4 0.028 proteoglycan 4 isoform B PRG4 0.028 proteoglycan 4 isoform A FLJ22184 0.027 PREDICTED: hypothetical protein FLJ22184 NACA 0.027 nascent polypeptide-associated complex alpha subuni... TAF4 0.027 TBP-associated factor 4 SFPQ 0.027 splicing factor proline/glutamine rich (polypyrimidin... CIC 0.025 capicua homolog MED15 0.024 mediator complex subunit 15 isoform b DIAPH1 0.024 diaphanous 1 isoform 2 DIAPH1 0.024 diaphanous 1 isoform 1 FLJ22184 0.024 PREDICTED: hypothetical protein FLJ22184 RAPH1 0.023 Ras association and pleckstrin homology domains 1 is... BAT2D1 0.023 HBxAg transactivated protein 2 CASKIN1 0.023 CASK interacting protein 1 BCORL1 0.023 BCL6 co-repressor-like 1 MUC7 0.023 mucin 7, secreted precursor MUC7 0.023 mucin 7, secreted precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.