Guide to the Human Genome
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Name: TAF6 Sequence: fasta or formatted (667aa) NCBI GI: 21536355
Description:

TBP-associated factor 6 isoform gamma

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [667aa] TBP-associated factor 6 isoform delta
alt prot [677aa] TBP-associated factor 6 isoform alpha
alt prot [677aa] TBP-associated factor 6 isoform alpha
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         59           3
 C cysteine            1.6         11           1
 D aspartate           3.3         22           1
 E glutamate           5.8         39           2
 F phenylalanine       1.9         13           1
 G glycine             6.6         44           3
 H histidine           1.6         11           1
 I isoleucine          4.5         30           2
 K lysine              6.3         42           2
 L leucine            10.0         67           3
 M methionine          1.6         11           1
 N asparagine          2.2         15           2
 P proline            11.1         74           3
 Q glutamine           5.8         39           2
 R arginine            4.0         27           1
 S serine              8.8         59           5
 T threonine           6.6         44           3
 V valine              6.3         42           2
 W tryptophan          0.6          4           1
 Y tyrosine            2.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBP-associated factor 6 isoform gamma 
TAF6                  0.994   TBP-associated factor 6 isoform alpha 
TAF6                  0.994   TBP-associated factor 6 isoform alpha 
TAF6                  0.973   TBP-associated factor 6 isoform delta 
TAF6L                 0.089   TAF6-like RNA polymerase II 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
TAF4                  0.030   TBP-associated factor 4 
PCLO                  0.029   piccolo isoform 2 
PCLO                  0.029   piccolo isoform 1 
MUC2                  0.029   mucin 2 precursor 
NUP214                0.028   nucleoporin 214kDa 
PRG4                  0.028   proteoglycan 4 isoform D 
PRG4                  0.028   proteoglycan 4 isoform C 
PRG4                  0.028   proteoglycan 4 isoform B 
PRG4                  0.028   proteoglycan 4 isoform A 
MED15                 0.028   mediator complex subunit 15 isoform b 
NACA                  0.027   nascent polypeptide-associated complex alpha subuni...
SFPQ                  0.027   splicing factor proline/glutamine rich (polypyrimidin...
CIC                   0.026   capicua homolog 
MUC17                 0.026   mucin 17 
RAPH1                 0.025   Ras association and pleckstrin homology domains 1 is...
DIAPH1                0.024   diaphanous 1 isoform 2 
DIAPH1                0.024   diaphanous 1 isoform 1 
LOC100294420          0.023   PREDICTED: similar to mucin 2 
BAT2D1                0.023   HBxAg transactivated protein 2 
ATN1                  0.023   atrophin-1 
ATN1                  0.023   atrophin-1 
BCORL1                0.022   BCL6 co-repressor-like 1 
COL7A1                0.022   alpha 1 type VII collagen precursor 
SYN1                  0.022   synapsin I isoform Ia 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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