TAF6 13320

Name: TAF6	Sequence: fasta or formatted (667aa)		NCBI GI: 21536355
Description: TBP-associated factor 6 isoform gamma		Referenced in: RNA Polymerase and General Transcription Factors
Other entries for this name: alt prot [667aa] TBP-associated factor 6 isoform delta alt prot [677aa] TBP-associated factor 6 isoform alpha alt prot [677aa] TBP-associated factor 6 isoform alpha
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.8 59 3 C cysteine 1.6 11 1 D aspartate 3.3 22 1 E glutamate 5.8 39 2 F phenylalanine 1.9 13 1 G glycine 6.6 44 3 H histidine 1.6 11 1 I isoleucine 4.5 30 2 K lysine 6.3 42 2 L leucine 10.0 67 3 M methionine 1.6 11 1 N asparagine 2.2 15 2 P proline 11.1 74 3 Q glutamine 5.8 39 2 R arginine 4.0 27 1 S serine 8.8 59 5 T threonine 6.6 44 3 V valine 6.3 42 2 W tryptophan 0.6 4 1 Y tyrosine 2.1 14 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 TBP-associated factor 6 isoform gamma TAF6 0.994 TBP-associated factor 6 isoform alpha TAF6 0.994 TBP-associated factor 6 isoform alpha TAF6 0.973 TBP-associated factor 6 isoform delta TAF6L 0.089 TAF6-like RNA polymerase II FLJ22184 0.031 PREDICTED: hypothetical protein FLJ22184 TAF4 0.030 TBP-associated factor 4 PCLO 0.029 piccolo isoform 2 PCLO 0.029 piccolo isoform 1 MUC2 0.029 mucin 2 precursor NUP214 0.028 nucleoporin 214kDa PRG4 0.028 proteoglycan 4 isoform D PRG4 0.028 proteoglycan 4 isoform C PRG4 0.028 proteoglycan 4 isoform B PRG4 0.028 proteoglycan 4 isoform A MED15 0.028 mediator complex subunit 15 isoform b NACA 0.027 nascent polypeptide-associated complex alpha subuni... SFPQ 0.027 splicing factor proline/glutamine rich (polypyrimidin... CIC 0.026 capicua homolog MUC17 0.026 mucin 17 RAPH1 0.025 Ras association and pleckstrin homology domains 1 is... DIAPH1 0.024 diaphanous 1 isoform 2 DIAPH1 0.024 diaphanous 1 isoform 1 LOC100294420 0.023 PREDICTED: similar to mucin 2 BAT2D1 0.023 HBxAg transactivated protein 2 ATN1 0.023 atrophin-1 ATN1 0.023 atrophin-1 BCORL1 0.022 BCL6 co-repressor-like 1 COL7A1 0.022 alpha 1 type VII collagen precursor SYN1 0.022 synapsin I isoform Ia Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.