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Search of human proteins with 5453638
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453638 AT rich interactive domain 3B [Homo sapiens]
(560 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453638 AT rich interactive domain 3B [Homo sapiens] 1098 0.0
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 360 1e-99
gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo s... 264 2e-70
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 106 6e-23
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 106 6e-23
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 104 2e-22
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 97 3e-20
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 97 3e-20
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 85 2e-16
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 85 2e-16
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 85 2e-16
gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens] 76 7e-14
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens] 76 7e-14
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 72 1e-12
gi|47078224 AT rich interactive domain 5A [Homo sapiens] 56 8e-08
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 56 1e-07
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 56 1e-07
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 54 5e-07
gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho... 52 2e-06
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 52 2e-06
gi|74136549 AT rich interactive domain 5B (MRF1-like) [Homo sapi... 49 9e-06
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 45 2e-04
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 45 2e-04
gi|4507379 TATA box binding protein [Homo sapiens] 45 2e-04
gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo ... 45 2e-04
gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens] 42 0.001
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive ... 42 0.001
gi|62953127 polyhomeotic 1-like [Homo sapiens] 42 0.001
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 42 0.001
>gi|5453638 AT rich interactive domain 3B [Homo sapiens]
Length = 560
Score = 1098 bits (2840), Expect = 0.0
Identities = 560/560 (100%), Positives = 560/560 (100%)
Query: 1 MEPLQQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTLLSATAGRP 60
MEPLQQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTLLSATAGRP
Sbjct: 1 MEPLQQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTLLSATAGRP 60
Query: 61 SGSTPLGPLARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDGDDEVAEVAEKETQAASK 120
SGSTPLGPLARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDGDDEVAEVAEKETQAASK
Sbjct: 61 SGSTPLGPLARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDGDDEVAEVAEKETQAASK 120
Query: 121 YFHVQKVARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTKDASKASPSVSTAGQPNWNLDE 180
YFHVQKVARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTKDASKASPSVSTAGQPNWNLDE
Sbjct: 121 YFHVQKVARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTKDASKASPSVSTAGQPNWNLDE 180
Query: 181 QLKQNGGLAWSDDADGGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPINRIP 240
QLKQNGGLAWSDDADGGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPINRIP
Sbjct: 181 QLKQNGGLAWSDDADGGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPINRIP 240
Query: 241 IMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLY 300
IMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLY
Sbjct: 241 IMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLY 300
Query: 301 AYECEKKALSSPAELQAAIDGNRREGRRPSYSSSLFGYSPAAATAAAAAGAPALLSPPKI 360
AYECEKKALSSPAELQAAIDGNRREGRRPSYSSSLFGYSPAAATAAAAAGAPALLSPPKI
Sbjct: 301 AYECEKKALSSPAELQAAIDGNRREGRRPSYSSSLFGYSPAAATAAAAAGAPALLSPPKI 360
Query: 361 RFPILGLGSSSGTNTSSPRISPATTLRKGDGAPVTTVPVPNRLAVPVTLASQQAGTRTAA 420
RFPILGLGSSSGTNTSSPRISPATTLRKGDGAPVTTVPVPNRLAVPVTLASQQAGTRTAA
Sbjct: 361 RFPILGLGSSSGTNTSSPRISPATTLRKGDGAPVTTVPVPNRLAVPVTLASQQAGTRTAA 420
Query: 421 LEQLRERLESGEPAEKKASRLSEEEQRLVQQAFQRNFFSMARQLPMKIRINGREDRAEAS 480
LEQLRERLESGEPAEKKASRLSEEEQRLVQQAFQRNFFSMARQLPMKIRINGREDRAEAS
Sbjct: 421 LEQLRERLESGEPAEKKASRLSEEEQRLVQQAFQRNFFSMARQLPMKIRINGREDRAEAS 480
Query: 481 AAALNLTTSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAPQSLGSSASSSSSSHCS 540
AAALNLTTSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAPQSLGSSASSSSSSHCS
Sbjct: 481 AAALNLTTSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAPQSLGSSASSSSSSHCS 540
Query: 541 PSPTSSRGTPSAEPSTSWSL 560
PSPTSSRGTPSAEPSTSWSL
Sbjct: 541 PSPTSSRGTPSAEPSTSWSL 560
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 360 bits (925), Expect = 1e-99
Identities = 244/598 (40%), Positives = 320/598 (53%), Gaps = 105/598 (17%)
Query: 1 MEPLQQQQQQQQQQQKQ--------PHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTL 52
ME L Q+QQ+ +Q+ + P P + A + ++ A+ AQ + +
Sbjct: 7 METLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQ-MAALAAM 65
Query: 53 LSATAGRPSGSTPLGPLARVPPTAAVAQVFERGNMNS----------------------E 90
+A AG ++P G PP + G S +
Sbjct: 66 RAAAAGLGHPASP-GGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMK 124
Query: 91 PEEEDGGLEDEDGDDEVAEVAEKETQAASKYFHVQKVARQDPRVAPMSNLLPAPGLPPH- 149
P+ E+ +E++ G+DE E + E + + + + P + L P PP
Sbjct: 125 PKWEEEEMEEDLGEDEEEEEEDYEDEEEEE--DEEGLGPPGPASLGTTALFPRKAQPPQA 182
Query: 150 -----------GQQAKED---HTKDASKASPSVSTAGQPNWNLDEQLKQNGGLAWSDDAD 195
GQ+ H A+ +P + +W +EQ KQ
Sbjct: 183 FRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQ----------- 231
Query: 196 GGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKL 255
LYELDGDP+RKEFLDDLF FMQKRGTP+NRIPIMAKQ+LDL+MLY L
Sbjct: 232 -------------LYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVL 278
Query: 256 VTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYECEKKALSSPAEL 315
VTEKGGLVE+INKK+WREITKGLNLPTSITSAAFTLRTQYMKYLY YECEK+ LS+P EL
Sbjct: 279 VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNEL 338
Query: 316 QAAIDGNRREGRRPSYSSSLFGYSPAAATAAAAAGAPALLSPPKIRFPILGLGSSSGTNT 375
QAAID NRREGRR S+ SLF YSP GA +LS PK+ P+ LG ++ TN
Sbjct: 339 QAAIDSNRREGRRQSFGGSLFAYSP--------GGAHGMLSSPKL--PVSSLGLAASTNG 388
Query: 376 SSPRISPATTLRKGDGAPVTTVPVPNRL---------------AVPVTLASQQAGTRTAA 420
SS I+PA ++K + + + + VP RL AV A + AA
Sbjct: 389 SS--ITPAPKIKKEEDSAI-PITVPGRLPVSLAGHPVVAAQAAAVQAAAAQAAVAAQAAA 445
Query: 421 LEQLRERLESGEPAEKKASRLSEEEQRLVQQAFQRNFFSMARQLPMKIRINGREDRAEAS 480
LEQLRE+LES EP EKK + +++E+QRL+Q+A Q+NF +MA QLPM IRIN + +
Sbjct: 446 LEQLREKLESAEPPEKKMALVADEQQRLMQRALQQNFLAMAAQLPMSIRINSQASESRQD 505
Query: 481 AAALNLT-TSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAPQSLGSSASSSSSS 537
+A+NLT T+ SI+MSV+I+G Y GVLFAQ P SAP G SSS+
Sbjct: 506 -SAVNLTGTNGSNSISMSVEINGIMYTGVLFAQPPAP--TPTSAPNKGGGGGGGSSSN 560
>gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo
sapiens]
Length = 412
Score = 264 bits (674), Expect = 2e-70
Identities = 199/507 (39%), Positives = 256/507 (50%), Gaps = 108/507 (21%)
Query: 49 QPTLLSATAGRPSGSTPLGPLARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDGDDEVA 108
Q L+ G + + PL P P Q E N EEE ED + D+E
Sbjct: 8 QAARLAQGVGPLAPACPLLPPQPPLPDHRTLQAPEGALGNVGAEEE----EDAEEDEEKR 63
Query: 109 EVAEKETQAASKYFHVQKVARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTKDASKASPSV 168
E A E +AA + + Q P +P S PGL PH
Sbjct: 64 EEAGAEEEAAEE----SRPGAQGPS-SPSSQ---PPGLHPH------------------- 96
Query: 169 STAGQPNWNLDEQLKQNGGLAWSDDADGGRGREISRDFAKLYELDGDPERKEFLDDLFVF 228
W +EQ KQ LYELD DP+RKEFLDDLF F
Sbjct: 97 ------EWTYEEQFKQ------------------------LYELDADPKRKEFLDDLFSF 126
Query: 229 MQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAA 288
MQKRGTP+NR+PIMAKQ+LDLY L++LVT KGGLVE+IN+K+WRE+T+GL+LPT+ITSAA
Sbjct: 127 MQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAA 186
Query: 289 FTLRTQYMKYLYAYECEKKALSSPAELQAAIDGNRREGRRPSYSSS-LFGYS-PAAATAA 346
FTLRTQYMKYLY YECE +ALSSP ELQAAID NRREGRR +Y+++ LFG + P A
Sbjct: 187 FTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQ 246
Query: 347 AAAGAPALLSPPKIRFPILGLGSSSGTNT-SSPRISPATTLRKGDGAPVTTVPVPNRLAV 405
A P P P GS+SG + ++SP+ ++ G P LA+
Sbjct: 247 DPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPC------LAL 300
Query: 406 PVTLASQQAGTRTAALEQLRERLESGEPAEKKASRLSEEEQRLVQQAFQRNFFSMARQLP 465
PV L AL RE+L EP EK+A + + + F ++P
Sbjct: 301 PVGL----------ALGPTREKLAPEEPPEKRAVLMGPMDP---PRPCMPPSFLPRGKVP 347
Query: 466 MKIRINGREDRAEASAAALNLTTSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAPQ 525
+ RE+R + LNL S I SINM+++I+G Y GVLFA++ V P
Sbjct: 348 L------REERLD---GPLNLAGSGISSINMALEINGVVYTGVLFARRQPV-------PA 391
Query: 526 SLGSSASSSSSSHCSPSPTSSRGTPSA 552
S G + +P+P S G PS+
Sbjct: 392 SQGPT---------NPAPPPSTGPPSS 409
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 [Homo
sapiens]
Length = 2191
Score = 106 bits (264), Expect = 6e-23
Identities = 93/333 (27%), Positives = 155/333 (46%), Gaps = 41/333 (12%)
Query: 59 RPSGSTPLGPLARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDG----------DDEVA 108
+P G+ PLG + P+A + GNM+S G + + G + +
Sbjct: 831 QPCGAVPLGRM----PSAGMQNRPFPGNMSSMTPSSPG-MSQQGGPGMGPPMPTVNRKAQ 885
Query: 109 EVAEKETQAASKYFHVQK-----------VARQDPRVAPMSNL--LPAPGLPPHGQQAKE 155
E A QAA+ ++ +A P PM+N L PP+
Sbjct: 886 EAAAAVMQAAANSAQSRQGSFPGMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAM 945
Query: 156 DHTKDASKASPSVSTAGQPNWNLDEQLKQNGGLAWSDDADGGRGREIS-----RDFAKLY 210
++ AS + + G+ L LK +G + + + S K+Y
Sbjct: 946 VNSSAASVGLADMMSPGESKLPLP--LKADGKEEGTPQPESKSKKSSSSTTTGEKITKVY 1003
Query: 211 ELDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKI 270
EL +PERK ++D FM++RG+P++ +P + K+ LDL+ LY V E GGL ++ K
Sbjct: 1004 ELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKK 1063
Query: 271 WREITKGLNLPTSITSAAFTLRTQYMKYLYAYECE-KKALSSPAELQAAIDGNRR---EG 326
WRE+ LN+ TS +SAA +L+ QY++YL+A+EC+ ++ P E+ + D ++ +
Sbjct: 1064 WRELATNLNVGTS-SSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQP 1122
Query: 327 RRPSYSSSLFG-YSPAAATAAAAAGAPALLSPP 358
P+ S SL G +P + + + A P L PP
Sbjct: 1123 PSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPP 1155
Score = 30.8 bits (68), Expect = 3.4
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 5 QQQQQQQQQQQKQPH 19
QQQQQQQQQQQ+Q H
Sbjct: 60 QQQQQQQQQQQQQQH 74
Score = 29.6 bits (65), Expect = 7.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 5 QQQQQQQQQQQKQPHLAPL 23
QQQQQQQQQQQ+Q P+
Sbjct: 58 QQQQQQQQQQQQQQQQHPI 76
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 [Homo
sapiens]
Length = 2178
Score = 106 bits (264), Expect = 6e-23
Identities = 93/333 (27%), Positives = 155/333 (46%), Gaps = 41/333 (12%)
Query: 59 RPSGSTPLGPLARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDG----------DDEVA 108
+P G+ PLG + P+A + GNM+S G + + G + +
Sbjct: 818 QPCGAVPLGRM----PSAGMQNRPFPGNMSSMTPSSPG-MSQQGGPGMGPPMPTVNRKAQ 872
Query: 109 EVAEKETQAASKYFHVQK-----------VARQDPRVAPMSNL--LPAPGLPPHGQQAKE 155
E A QAA+ ++ +A P PM+N L PP+
Sbjct: 873 EAAAAVMQAAANSAQSRQGSFPGMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAM 932
Query: 156 DHTKDASKASPSVSTAGQPNWNLDEQLKQNGGLAWSDDADGGRGREIS-----RDFAKLY 210
++ AS + + G+ L LK +G + + + S K+Y
Sbjct: 933 VNSSAASVGLADMMSPGESKLPLP--LKADGKEEGTPQPESKSKKSSSSTTTGEKITKVY 990
Query: 211 ELDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKI 270
EL +PERK ++D FM++RG+P++ +P + K+ LDL+ LY V E GGL ++ K
Sbjct: 991 ELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKK 1050
Query: 271 WREITKGLNLPTSITSAAFTLRTQYMKYLYAYECE-KKALSSPAELQAAIDGNRR---EG 326
WRE+ LN+ TS +SAA +L+ QY++YL+A+EC+ ++ P E+ + D ++ +
Sbjct: 1051 WRELATNLNVGTS-SSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQP 1109
Query: 327 RRPSYSSSLFG-YSPAAATAAAAAGAPALLSPP 358
P+ S SL G +P + + + A P L PP
Sbjct: 1110 PSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPP 1142
Score = 30.8 bits (68), Expect = 3.4
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 5 QQQQQQQQQQQKQPH 19
QQQQQQQQQQQ+Q H
Sbjct: 60 QQQQQQQQQQQQQQH 74
Score = 29.6 bits (65), Expect = 7.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 5 QQQQQQQQQQQKQPHLAPL 23
QQQQQQQQQQQ+Q P+
Sbjct: 58 QQQQQQQQQQQQQQQQHPI 76
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 104 bits (259), Expect = 2e-22
Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 6/202 (2%)
Query: 162 SKASPSVSTAGQPNWNLDEQLKQNGGLAWSDDADGGRGREISRDFAKLYELDGDPERKEF 221
S SPS ++ + + + + G K+YEL +PERK +
Sbjct: 995 SPMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPERKLW 1054
Query: 222 LDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLP 281
+D FM++RG+P++ +P + K+ LDL+ LY V E GGL ++ K WRE+ LN+
Sbjct: 1055 VDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVG 1114
Query: 282 TSITSAAFTLRTQYMKYLYAYECE-KKALSSPAELQAAIDGNRR---EGRRPSYSSSLFG 337
TS +SAA +L+ QY++YL+A+EC+ ++ P E+ + D ++ + P+ S SL G
Sbjct: 1115 TS-SSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQPPSPANSGSLQG 1173
Query: 338 -YSPAAATAAAAAGAPALLSPP 358
+P + + + A P L PP
Sbjct: 1174 PQTPQSTGSNSMAEVPGDLKPP 1195
Score = 30.8 bits (68), Expect = 3.4
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 5 QQQQQQQQQQQKQPH 19
QQQQQQQQQQQ+Q H
Sbjct: 60 QQQQQQQQQQQQQQH 74
Score = 29.6 bits (65), Expect = 7.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 5 QQQQQQQQQQQKQPHLAPL 23
QQQQQQQQQQQ+Q P+
Sbjct: 58 QQQQQQQQQQQQQQQQHPI 76
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 97.4 bits (241), Expect = 3e-20
Identities = 84/325 (25%), Positives = 139/325 (42%), Gaps = 53/325 (16%)
Query: 62 GSTPLGP-LARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDGDDEVAEVAEKETQAASK 120
G+ P GP +A +PP G MN + +E A +
Sbjct: 864 GNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQET----------------------AVAM 901
Query: 121 YFHVQKVARQDPRVAPMSNLLPAPGLPPHGQQAKE----------DHTKDASKASPSVST 170
+ + + P M+ PP+GQ ++ + A+ S
Sbjct: 902 HVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYSMGGTMANNSAGM 961
Query: 171 AGQPNWNLDEQLKQNGGLAWSDDADGGRGRE-----------ISRDFAKLYELDGDPERK 219
A P +K ++ ADG E + KLYEL G+PERK
Sbjct: 962 AASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERK 1021
Query: 220 EFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLN 279
++D F +++ + +P + ++ LDLY LY V E GGL ++ K WRE+ LN
Sbjct: 1022 MWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLN 1081
Query: 280 LPTSITSAAFTLRTQYMKYLYAYECE-KKALSSPAELQAAIDGNRREGR----RPSYSSS 334
+ TS +SAA +L+ QY++ LYA+EC+ ++ P ++ AA D + + + P+ S S
Sbjct: 1082 VGTS-SSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGS 1140
Query: 335 LFG-YSPAAATAAAAAGAPALLSPP 358
+ G +P + +++ A G L PP
Sbjct: 1141 MQGPQTPQSTSSSMAEGGD--LKPP 1163
Score = 32.0 bits (71), Expect = 1.5
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 5 QQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTLLSATA-GRPSGS 63
Q Q QQQQ +QP + L A Q Q + Q Y+Q+ P LS + G + S
Sbjct: 555 QAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASS 614
Query: 64 TP 65
P
Sbjct: 615 AP 616
Score = 30.0 bits (66), Expect = 5.9
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 33/184 (17%)
Query: 3 PLQQQQQQQQQQQKQ-PHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTLLSATAGRPS 61
P QQQ QQ Q PH P + Q Q++ +Q Y+Q+ +QP + A PS
Sbjct: 478 PQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQ-PSQPPHQQSPAPYPS 536
Query: 62 --GSTPLGPLARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDGDDEVAEVAEKETQAAS 119
+T P ++ P S+P+ + + + + +++ QAA
Sbjct: 537 QQSTTQQHPQSQPP--------------YSQPQAQSPYQQQQPQQPAPSTLSQ---QAA- 578
Query: 120 KYFHVQKVARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTKDASKASPSV--STAGQPNWN 177
+ Q ++Q + A P P Q+ +D + ++PS+ S GQ + N
Sbjct: 579 ---YPQPQSQQSQQTAYSQQRFPPP------QELSQDSFGSQASSAPSMTSSKGGQEDMN 629
Query: 178 LDEQ 181
L Q
Sbjct: 630 LSLQ 633
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 97.4 bits (241), Expect = 3e-20
Identities = 84/325 (25%), Positives = 139/325 (42%), Gaps = 53/325 (16%)
Query: 62 GSTPLGP-LARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDGDDEVAEVAEKETQAASK 120
G+ P GP +A +PP G MN + +E A +
Sbjct: 864 GNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQET----------------------AVAM 901
Query: 121 YFHVQKVARQDPRVAPMSNLLPAPGLPPHGQQAKE----------DHTKDASKASPSVST 170
+ + + P M+ PP+GQ ++ + A+ S
Sbjct: 902 HVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYSMGGTMANNSAGM 961
Query: 171 AGQPNWNLDEQLKQNGGLAWSDDADGGRGRE-----------ISRDFAKLYELDGDPERK 219
A P +K ++ ADG E + KLYEL G+PERK
Sbjct: 962 AASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERK 1021
Query: 220 EFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLN 279
++D F +++ + +P + ++ LDLY LY V E GGL ++ K WRE+ LN
Sbjct: 1022 MWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLN 1081
Query: 280 LPTSITSAAFTLRTQYMKYLYAYECE-KKALSSPAELQAAIDGNRREGR----RPSYSSS 334
+ TS +SAA +L+ QY++ LYA+EC+ ++ P ++ AA D + + + P+ S S
Sbjct: 1082 VGTS-SSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGS 1140
Query: 335 LFG-YSPAAATAAAAAGAPALLSPP 358
+ G +P + +++ A G L PP
Sbjct: 1141 MQGPQTPQSTSSSMAEGGD--LKPP 1163
Score = 32.0 bits (71), Expect = 1.5
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 5 QQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTLLSATA-GRPSGS 63
Q Q QQQQ +QP + L A Q Q + Q Y+Q+ P LS + G + S
Sbjct: 555 QAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASS 614
Query: 64 TP 65
P
Sbjct: 615 AP 616
Score = 30.0 bits (66), Expect = 5.9
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 33/184 (17%)
Query: 3 PLQQQQQQQQQQQKQ-PHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTLLSATAGRPS 61
P QQQ QQ Q PH P + Q Q++ +Q Y+Q+ +QP + A PS
Sbjct: 478 PQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQ-PSQPPHQQSPAPYPS 536
Query: 62 --GSTPLGPLARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDGDDEVAEVAEKETQAAS 119
+T P ++ P S+P+ + + + + +++ QAA
Sbjct: 537 QQSTTQQHPQSQPP--------------YSQPQAQSPYQQQQPQQPAPSTLSQ---QAA- 578
Query: 120 KYFHVQKVARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTKDASKASPSV--STAGQPNWN 177
+ Q ++Q + A P P Q+ +D + ++PS+ S GQ + N
Sbjct: 579 ---YPQPQSQQSQQTAYSQQRFPPP------QELSQDSFGSQASSAPSMTSSKGGQEDMN 629
Query: 178 LDEQ 181
L Q
Sbjct: 630 LSLQ 633
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 85.1 bits (209), Expect = 2e-16
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 32/198 (16%)
Query: 119 SKYFHVQK--VARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTKDASKASPSVSTAGQP-N 175
SK++ + + + D P S L PGL KAS + T P N
Sbjct: 219 SKFYSIARKDIKEVDILNLPESELSTKPGL---------------QKASIFLKTRVVPDN 263
Query: 176 WNLD--EQLKQNGGLAWSDDADGG-------RGREISRDFAKLYELDGDPERKE-FLDDL 225
W +D E L+ + SDD DG + +E + ++ E + DPE ++ FL L
Sbjct: 264 WKMDISEILESSS----SDDEDGPAEENDEEKEKEAKKTEEEVPEEELDPEERDNFLQQL 319
Query: 226 FVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSIT 285
+ FM+ RGTPIN+ P++ + L+L+ L++LV +GG I + +W++I L +P +
Sbjct: 320 YKFMEDRGTPINKPPVLGYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNS 379
Query: 286 SAAFTLRTQYMKYLYAYE 303
+A++ ++T Y KYLY +E
Sbjct: 380 AASYNVKTAYRKYLYGFE 397
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 85.1 bits (209), Expect = 2e-16
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 32/198 (16%)
Query: 119 SKYFHVQK--VARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTKDASKASPSVSTAGQP-N 175
SK++ + + + D P S L PGL KAS + T P N
Sbjct: 219 SKFYSIARKDIKEVDILNLPESELSTKPGL---------------QKASIFLKTRVVPDN 263
Query: 176 WNLD--EQLKQNGGLAWSDDADGG-------RGREISRDFAKLYELDGDPERKE-FLDDL 225
W +D E L+ + SDD DG + +E + ++ E + DPE ++ FL L
Sbjct: 264 WKMDISEILESSS----SDDEDGPAEENDEEKEKEAKKTEEEVPEEELDPEERDNFLQQL 319
Query: 226 FVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSIT 285
+ FM+ RGTPIN+ P++ + L+L+ L++LV +GG I + +W++I L +P +
Sbjct: 320 YKFMEDRGTPINKPPVLGYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNS 379
Query: 286 SAAFTLRTQYMKYLYAYE 303
+A++ ++T Y KYLY +E
Sbjct: 380 AASYNVKTAYRKYLYGFE 397
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 85.1 bits (209), Expect = 2e-16
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 32/198 (16%)
Query: 119 SKYFHVQK--VARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTKDASKASPSVSTAGQP-N 175
SK++ + + + D P S L PGL KAS + T P N
Sbjct: 219 SKFYSIARKDIKEVDILNLPESELSTKPGL---------------QKASIFLKTRVVPDN 263
Query: 176 WNLD--EQLKQNGGLAWSDDADGG-------RGREISRDFAKLYELDGDPERKE-FLDDL 225
W +D E L+ + SDD DG + +E + ++ E + DPE ++ FL L
Sbjct: 264 WKMDISEILESSS----SDDEDGPAEENDEEKEKEAKKTEEEVPEEELDPEERDNFLQQL 319
Query: 226 FVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSIT 285
+ FM+ RGTPIN+ P++ + L+L+ L++LV +GG I + +W++I L +P +
Sbjct: 320 YKFMEDRGTPINKPPVLGYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNS 379
Query: 286 SAAFTLRTQYMKYLYAYE 303
+A++ ++T Y KYLY +E
Sbjct: 380 AASYNVKTAYRKYLYGFE 397
>gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]
Length = 1226
Score = 76.3 bits (186), Expect = 7e-14
Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 217 ERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITK 276
ER+ FL L+ FM+ RGTPIN+ P++ + L+L+ L++LV + GG I + +W+++ +
Sbjct: 308 ERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQ 367
Query: 277 GLNLPTSITSAAFTLRTQYMKYLYAYECEKKALSSPAELQAAI 319
L +P ++A + ++ Y KYLY + E+ S+ E Q A+
Sbjct: 368 DLGIPVLNSAAGYNVKCAYKKYLYGF--EEYCRSANIEFQMAL 408
>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
Length = 1312
Score = 76.3 bits (186), Expect = 7e-14
Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 217 ERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITK 276
ER+ FL L+ FM+ RGTPIN+ P++ + L+L+ L++LV + GG I + +W+++ +
Sbjct: 308 ERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQ 367
Query: 277 GLNLPTSITSAAFTLRTQYMKYLYAYECEKKALSSPAELQAAI 319
L +P ++A + ++ Y KYLY + E+ S+ E Q A+
Sbjct: 368 DLGIPVLNSAAGYNVKCAYKKYLYGF--EEYCRSANIEFQMAL 408
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 72.4 bits (176), Expect = 1e-12
Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 215 DPERK--EFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWR 272
D RK FLD+L F RG+P +IP + + LDL+ LY VT GG ++ K W
Sbjct: 11 DERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWG 70
Query: 273 EITKGLNLPTSITSAAFTLRTQYMKYLYAYE 303
EI + N P S ++AAF L+ Y++YL YE
Sbjct: 71 EIVEEFNFPRSCSNAAFALKQYYLRYLEKYE 101
>gi|47078224 AT rich interactive domain 5A [Homo sapiens]
Length = 594
Score = 56.2 bits (134), Expect = 8e-08
Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 30/211 (14%)
Query: 183 KQNG-----GLAWSDDADGGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPIN 237
KQNG L S +A G R E R+ E + FL L+ FM++R TPI
Sbjct: 29 KQNGIQNPISLEDSPEAGGEREEEQERE-----------EEQAFLVSLYKFMKERHTPIE 77
Query: 238 RIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMK 297
R+P + + ++L+ +YK V + G + +++W+ + L TSAA R Y +
Sbjct: 78 RVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYER 137
Query: 298 YLYAY------ECEKKALSSPAELQAAI-------DGNRREGRRPSYSSSLFGYSPAAAT 344
+ Y E +K +S Q + DG ++ + P
Sbjct: 138 LVLPYVRHLKGEDDKPLPTSKPRKQYKMAKENRGDDGATERPKKAKEERRMDQMMPGKTK 197
Query: 345 AAAAAGAP-ALLSPPKIRFPILGLGSSSGTN 374
A AA AP PP+ GL S S +
Sbjct: 198 ADAADPAPLPSQEPPRNSTEQQGLASGSSVS 228
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 55.8 bits (133), Expect = 1e-07
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 218 RKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKG 277
R +FLD L F + +G+ + +IP++ ++ILDLY L K+V KGG + +K W ++
Sbjct: 87 RLDFLDQLAKFWELQGSTL-KIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSR 145
Query: 278 LN-LPTSITSAAFTLRTQYMKYLYAYECEKKALS 310
L LP T + L++ Y + LY YE + +S
Sbjct: 146 LGYLPGKGTGS--LLKSHYERILYPYELFQSGVS 177
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 55.8 bits (133), Expect = 1e-07
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 218 RKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKG 277
R +FLD L F + +G+ + +IP++ ++ILDLY L K+V KGG + +K W ++
Sbjct: 87 RLDFLDQLAKFWELQGSTL-KIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSR 145
Query: 278 LN-LPTSITSAAFTLRTQYMKYLYAYECEKKALS 310
L LP T + L++ Y + LY YE + +S
Sbjct: 146 LGYLPGKGTGS--LLKSHYERILYPYELFQSGVS 177
>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
sapiens]
Length = 1560
Score = 53.5 bits (127), Expect = 5e-07
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 208 KLYELDGDPERK-EFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEII 266
+L EL+ K +LD + F + +G+ + +IP + ++ILDLY L K+V E+GG I
Sbjct: 71 RLNELEAQTRVKLNYLDQIAKFWEIQGSSL-KIPNVERRILDLYSLSKIVVEEGGYEAIC 129
Query: 267 NKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 303
+ W + + LN P + LR+ Y + +Y YE
Sbjct: 130 KDRRWARVAQRLNYPPG-KNIGSLLRSHYERIVYPYE 165
>gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo
sapiens]
Length = 1539
Score = 51.6 bits (122), Expect = 2e-06
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 208 KLYELDGDPERK-EFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEII 266
+L EL+ K +LD + F + +G+ + +IP + ++ILDLY L K+V E+GG I
Sbjct: 71 RLNELEAQTRVKLNYLDQIAKFWEIQGSSL-KIPNVERKILDLYSLSKIVIEEGGYEAIC 129
Query: 267 NKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 303
+ W + + L+ P + LR+ Y + +Y YE
Sbjct: 130 KDRRWARVAQRLHYPPG-KNIGSLLRSHYERIIYPYE 165
>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
sapiens]
Length = 1570
Score = 51.6 bits (122), Expect = 2e-06
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 208 KLYELDGDPERK-EFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEII 266
+L EL+ K +LD + F + +G+ + +IP + ++ILDLY L K+V E+GG I
Sbjct: 71 RLNELEAQTRVKLNYLDQIAKFWEIQGSSL-KIPNVERKILDLYSLSKIVIEEGGYEAIC 129
Query: 267 NKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 303
+ W + + L+ P + LR+ Y + +Y YE
Sbjct: 130 KDRRWARVAQRLHYPPG-KNIGSLLRSHYERIIYPYE 165
>gi|74136549 AT rich interactive domain 5B (MRF1-like) [Homo
sapiens]
Length = 1188
Score = 49.3 bits (116), Expect = 9e-06
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 217 ERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITK 276
+ + FL L+ +M++R TPI RIP + + ++L+ +++ + GG I ++ W+ I
Sbjct: 320 DEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYD 379
Query: 277 GLNLPTSITSAAFTLRTQYMKYLYAYE 303
L TSAA R Y + + YE
Sbjct: 380 ELGGNPGSTSAATCTRRHYERLILPYE 406
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 45.1 bits (105), Expect = 2e-04
Identities = 33/84 (39%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 5 QQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTL----------LS 54
QQQQQQQQQQQ+Q P Q + + QQ + A Y + P L +
Sbjct: 222 QQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVP 281
Query: 55 ATAGRPSGSTPLGPLARVPPTAAV 78
A GRPS P P A PP AAV
Sbjct: 282 APGGRPS---PAPPAAAQPPAAAV 302
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 45.1 bits (105), Expect = 2e-04
Identities = 33/84 (39%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 5 QQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTL----------LS 54
QQQQQQQQQQQ+Q P Q + + QQ + A Y + P L +
Sbjct: 222 QQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVP 281
Query: 55 ATAGRPSGSTPLGPLARVPPTAAV 78
A GRPS P P A PP AAV
Sbjct: 282 APGGRPS---PAPPAAAQPPAAAV 302
>gi|4507379 TATA box binding protein [Homo sapiens]
Length = 339
Score = 44.7 bits (104), Expect = 2e-04
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 5 QQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTLLSATAGRPSGST 64
QQQQQQQQQQQ+Q Q +++Q QQ ++ Q A V Q T AT G SG
Sbjct: 60 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQG-TSGQA 118
Query: 65 P 65
P
Sbjct: 119 P 119
Score = 42.4 bits (98), Expect = 0.001
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 5 QQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREA------QFLYAQKLVTQPTLLSATAG 58
QQQQQQQQQQQ+Q A ++ QQ + Q ++Q L T P L T
Sbjct: 80 QQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQAPQLFHSQTLTTAP-LPGTTPL 138
Query: 59 RPSGSTPLGPLARVPPTA 76
PS TP+ P+ P +
Sbjct: 139 YPSPMTPMTPITPATPAS 156
Score = 31.2 bits (69), Expect = 2.6
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 7 QQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTLLSATAGRPSGSTPL 66
++QQ+QQQQ+Q Q +++Q QQ ++ Q Q+ Q +A S
Sbjct: 53 EEQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQ 112
Query: 67 GPLARVPPTAAVAQVFERGNMNSEP 91
G + P Q+F + + P
Sbjct: 113 GTSGQAP------QLFHSQTLTTAP 131
>gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo
sapiens]
Length = 1246
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/75 (24%), Positives = 41/75 (54%)
Query: 229 MQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAA 288
++ +G ++ +P++ LDL ++L+ E GG+ ++ + K W ++ L +P +
Sbjct: 635 LKSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPRTAQDRL 694
Query: 289 FTLRTQYMKYLYAYE 303
L+ Y +YL +Y+
Sbjct: 695 AKLQEAYCQYLLSYD 709
>gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]
Length = 1544
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 208 KLYELDGDPERK-EFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEII 266
+L EL+ K FLD + + + +G+ + +IP + ++ILDL+ L KLV E+GG +
Sbjct: 89 RLNELEAQTRVKLNFLDQIAKYWELQGSTL-KIPHVERKILDLFQLNKLVAEEGGFAVVC 147
Query: 267 NKKIWREI 274
+ W +I
Sbjct: 148 KDRKWTKI 155
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 42.0 bits (97), Expect = 0.001
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 31/151 (20%)
Query: 301 AYECEKKALSSPAELQAAIDGNRREGRRPSYSSSLFGYSPAAATAAAAAGAPALLSPPKI 360
AYE E++A + +A D RE +R ++ SPAAA AAAAA AP+
Sbjct: 153 AYEAERRAKLQ--QCRAERDRIMREEKRRLFTP----LSPAAAAAAAAASAPS------- 199
Query: 361 RFPILGLGSSSGTNTSSPRISPA-TTLRKGDGAP--VTTVPVPNRLAVPVTLASQQAGTR 417
GSSS +++S SPA RK +P T P P A + G +
Sbjct: 200 ------AGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPP---------AGSRTGRK 244
Query: 418 TAALEQLRERLESGEPAEKKASRLSEEEQRL 448
+ +L+ L R E +E AS S + L
Sbjct: 245 SHSLDSLSRRREGALSSESGASSSSYSGESL 275
>gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive
domain 1B (RBP2-like), partial [Homo sapiens]
Length = 977
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 208 KLYELDGDPERK-EFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEII 266
+L EL+ K FLD + + + +G+ + +IP + ++ILDL+ L KLV E+GG +
Sbjct: 89 RLNELEAQTRVKLNFLDQIAKYWELQGSTL-KIPHVERKILDLFQLNKLVAEEGGFAVVC 147
Query: 267 NKKIWREI 274
+ W +I
Sbjct: 148 KDRKWTKI 155
>gi|62953127 polyhomeotic 1-like [Homo sapiens]
Length = 1004
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 5 QQQQQQQQQQQKQPHLAPL--QMDAREKQGQQMREAQF-LYAQKLVTQPTLLSATAGRPS 61
QQQQQQQQQQQ+QP L + QQ+ +Q AQ LV QP L S+ P
Sbjct: 427 QQQQQQQQQQQQQPQATTLTAPQPPQVPPTQQVPPSQSQQQAQTLVVQPMLQSSPLSLPP 486
Query: 62 GSTPLG--PLARVPPTAAV 78
+ P P+ PP A +
Sbjct: 487 DAAPKPPIPIQSKPPVAPI 505
Score = 29.6 bits (65), Expect = 7.7
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 4 LQQQQQQQQQQQKQPHLAP-LQMDAREKQGQQMREAQFLYAQKLVTQPTLLSATAGRPSG 62
+ QQQ Q +Q + H A LQ+ +++Q QQ ++ Q QP + TA +P
Sbjct: 401 IHHQQQFQHRQSQLLHTATHLQLAQQQQQQQQQQQQQ--------QQPQATTLTAPQP-- 450
Query: 63 STPLGPLARVPPTAAVAQ 80
+ P +VPP+ + Q
Sbjct: 451 -PQVPPTQQVPPSQSQQQ 467
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 42.0 bits (97), Expect = 0.001
Identities = 47/169 (27%), Positives = 63/169 (37%), Gaps = 31/169 (18%)
Query: 5 QQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTLLSATAGRPSGST 64
QQQQQQQQQQQ+Q Q+ AR Q Q ++ Q + Q T PT + P G
Sbjct: 266 QQQQQQQQQQQQQQQQQQQQLQARPPQQHQQQQPQGIRPQ--FTAPTQVPV----PPGWN 319
Query: 65 PLGPLARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDGDDEVAEVAEKETQAASKYFHV 124
L A PP A + N + G ++ ++ QA V
Sbjct: 320 QLPSGALQPPPAQGSLGTMTANQGWKKAPLPGPMQ-------------QQLQARPSLATV 366
Query: 125 QKVARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTKDASKASPSVSTAGQ 173
Q + P P P QQA + HT ++P TA Q
Sbjct: 367 QTPSH------------PPPPYPFGSQQASQAHTNFPQMSNPGQFTAPQ 403
Score = 30.0 bits (66), Expect = 5.9
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 2 EPLQQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYAQK 45
+P QQQ Q Q QQ+QP P Q ++++Q QQ + L Q+
Sbjct: 999 QPPQQQPQPQLPQQQQPP-PPSQPQSQQQQQQQQQMMMMLMMQQ 1041
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.126 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,792,112
Number of Sequences: 37866
Number of extensions: 1191814
Number of successful extensions: 13422
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 9392
Number of HSP's gapped (non-prelim): 2516
length of query: 560
length of database: 18,247,518
effective HSP length: 107
effective length of query: 453
effective length of database: 14,195,856
effective search space: 6430722768
effective search space used: 6430722768
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.