Guide to the Human Genome
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Name: JARID2 Sequence: fasta or formatted (1246aa) NCBI GI: 11863152
Description:

jumonji, AT rich interactive domain 2 protein

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         80           3
 C cysteine            2.3         29           2
 D aspartate           3.6         45           2
 E glutamate           8.1        101           4
 F phenylalanine       2.4         30           2
 G glycine             7.0         87           3
 H histidine           3.7         46           3
 I isoleucine          3.1         39           2
 K lysine              9.2        115           3
 L leucine             7.7         96           2
 M methionine          1.8         23           1
 N asparagine          3.8         47           2
 P proline             6.0         75           3
 Q glutamine           4.6         57           2
 R arginine            6.7         84           3
 S serine              9.6        119           4
 T threonine           5.1         64           2
 V valine              6.1         76           2
 W tryptophan          1.0         12           1
 Y tyrosine            1.7         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   jumonji, AT rich interactive domain 2 protein 
KDM5A                 0.049   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.049   retinoblastoma binding protein 2 isoform 2 
KDM5C                 0.048   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.048   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5D                 0.047   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.047   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5B                 0.044   jumonji, AT rich interactive domain 1B 
LOC100133760          0.044   PREDICTED: similar to Jumonji, AT rich interactive ...
KDM5D                 0.042   jumonji, AT rich interactive domain 1D isoform 1 [H...
LOC100129053          0.025   PREDICTED: hypothetical protein 
LOC100129053          0.025   PREDICTED: hypothetical protein 
LOC100129053          0.025   PREDICTED: hypothetical protein 
KDM4D                 0.024   jumonji domain containing 2D 
KDM4C                 0.022   jumonji domain containing 2C isoform 3 
KDM4C                 0.022   jumonji domain containing 2C isoform 4 
KDM4C                 0.022   jumonji domain containing 2C isoform 2 
KDM4C                 0.022   jumonji domain containing 2C isoform 1 
LOC390245             0.022   PREDICTED: hypothetical protein 
LOC390245             0.022   PREDICTED: hypothetical protein 
LOC390245             0.022   PREDICTED: hypothetical protein 
KDM4B                 0.022   jumonji domain containing 2B 
KDM4A                 0.020   jumonji domain containing 2A 
NOLC1                 0.011   nucleolar and coiled-body phosphoprotein 1 
BOD1L                 0.010   biorientation of chromosomes in cell division 1-like...
ARID2                 0.010   AT rich interactive domain 2 (ARID, RFX-like) 
ARID1B                0.010   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.010   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
ARID1B                0.010   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
FLJ37078              0.009   hypothetical protein LOC222183 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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