ARID4A 1486

Name: ARID4A	Sequence: fasta or formatted (1203aa)		NCBI GI: 115334673
Description: retinoblastoma-binding protein 1 isoform II		Referenced in: Nonhistone Chromosomal Proteins RB1 and Related Functions
Other entries for this name: alt prot [1257aa] retinoblastoma-binding protein 1 isoform I alt prot [1188aa] retinoblastoma-binding protein 1 isoform III
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.4 53 3 C cysteine 1.3 16 1 D aspartate 7.7 93 3 E glutamate 13.9 167 4 F phenylalanine 1.9 23 1 G glycine 4.5 54 2 H histidine 1.2 14 3 I isoleucine 4.9 59 2 K lysine 10.7 129 3 L leucine 7.6 92 3 M methionine 1.7 20 1 N asparagine 4.7 57 1 P proline 4.2 50 2 Q glutamine 3.5 42 2 R arginine 5.1 61 3 S serine 9.9 119 4 T threonine 5.0 60 2 V valine 5.2 63 2 W tryptophan 0.6 7 1 Y tyrosine 2.0 24 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 retinoblastoma-binding protein 1 isoform II ARID4A 0.983 retinoblastoma-binding protein 1 isoform III ARID4A 0.980 retinoblastoma-binding protein 1 isoform I ARID4B 0.330 AT rich interactive domain 4B isoform 1 ARID4B 0.266 AT rich interactive domain 4B isoform 2 ARID3B 0.026 AT rich interactive domain 3B ANKRD12 0.025 ankyrin repeat domain 12 isoform 2 ANKRD12 0.025 ankyrin repeat domain 12 isoform 1 ARID3C 0.025 AT rich interactive domain 3C (BRIGHT- like) ARID5B 0.023 AT rich interactive domain 5B (MRF1-like) ARID3A 0.021 AT rich interactive domain 3A (BRIGHT- like) protein ... CENPE 0.021 centromere protein E CCDC88A 0.021 coiled-coil domain containing 88A isoform 1 CCDC88A 0.021 coiled-coil domain containing 88A isoform 2 NEFM 0.020 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.020 neurofilament, medium polypeptide 150kDa isoform 2 ... ARID5A 0.020 AT rich interactive domain 5A RIF1 0.020 RAP1 interacting factor 1 RBM25 0.019 RNA binding motif protein 25 LOC283685 0.019 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC283685 0.019 PREDICTED: golgi autoantigen, golgin subfamily a-li... NOLC1 0.019 nucleolar and coiled-body phosphoprotein 1 BOD1L 0.018 biorientation of chromosomes in cell division 1-like... ARID1B 0.018 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.018 AT rich interactive domain 1B (SWI1-like) isoform 3 ... NEFH 0.017 neurofilament, heavy polypeptide 200kDa CALD1 0.017 caldesmon 1 isoform 1 EIF5B 0.017 eukaryotic translation initiation factor 5B CYLC1 0.016 cylicin, basic protein of sperm head cytoskeleton 1... NCL 0.016 nucleolin Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.