Guide to the Human Genome
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Name: ARID3B Sequence: fasta or formatted (560aa) NCBI GI: 5453638
Description:

AT rich interactive domain 3B

Referenced in:

Nonhistone Chromosomal Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         63           5
 C cysteine            0.4          2           1
 D aspartate           4.3         24           2
 E glutamate           6.8         38           3
 F phenylalanine       2.5         14           2
 G glycine             7.0         39           2
 H histidine           1.1          6           1
 I isoleucine          3.6         20           2
 K lysine              5.0         28           2
 L leucine             9.1         51           2
 M methionine          2.1         12           1
 N asparagine          2.9         16           1
 P proline             7.7         43           2
 Q glutamine           7.5         42          11
 R arginine            6.1         34           2
 S serine             10.0         56           6
 T threonine           5.9         33           2
 V valine              4.1         23           2
 W tryptophan          0.7          4           1
 Y tyrosine            2.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   AT rich interactive domain 3B 
ARID3A                0.312   AT rich interactive domain 3A (BRIGHT- like) protein ...
ARID3C                0.223   AT rich interactive domain 3C (BRIGHT- like) 
ARID1B                0.075   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.075   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
ARID1B                0.074   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1A                0.067   AT rich interactive domain 1A isoform a 
ARID1A                0.067   AT rich interactive domain 1A isoform b 
ARID4A                0.056   retinoblastoma-binding protein 1 isoform III 
ARID4A                0.056   retinoblastoma-binding protein 1 isoform II 
ARID4A                0.056   retinoblastoma-binding protein 1 isoform I 
ARID4B                0.048   AT rich interactive domain 4B isoform 2 
ARID4B                0.048   AT rich interactive domain 4B isoform 1 
ARID2                 0.044   AT rich interactive domain 2 (ARID, RFX-like) 
ARID5A                0.029   AT rich interactive domain 5A 
KDM5A                 0.029   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.029   retinoblastoma binding protein 2 isoform 2 
KDM5C                 0.027   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5D                 0.025   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.025   jumonji, AT rich interactive domain 1D isoform 1 [H...
ARID5B                0.022   AT rich interactive domain 5B (MRF1-like) 
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
TBP                   0.019   TATA box binding protein 
JARID2                0.019   jumonji, AT rich interactive domain 2 protein 
KDM5B                 0.016   jumonji, AT rich interactive domain 1B 
LOC100130174          0.016   PREDICTED: hypothetical protein 
LOC100133760          0.016   PREDICTED: similar to Jumonji, AT rich interactive ...
PHC1                  0.016   polyhomeotic 1-like 
NCOA6                 0.016   nuclear receptor coactivator 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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