KDM5D 26119

Name: KDM5D	Sequence: fasta or formatted (1539aa)		NCBI GI: 33356560
Description: jumonji, AT rich interactive domain 1D isoform 2		Referenced in: Histones, Related Proteins, and Modifying Enzymes PHD Finger Proteins Y-linked Genes
Other entries for this name: alt prot [1570aa] jumonji, AT rich interactive domain 1D isoform 1 alt prot [1482aa] jumonji, AT rich interactive domain 1D isoform 3
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.0 107 2 C cysteine 3.2 49 1 D aspartate 4.7 73 2 E glutamate 9.2 141 3 F phenylalanine 2.9 45 1 G glycine 5.1 78 3 H histidine 2.6 40 1 I isoleucine 3.8 59 2 K lysine 5.3 81 2 L leucine 12.0 185 2 M methionine 2.2 34 2 N asparagine 2.9 44 2 P proline 6.4 99 3 Q glutamine 5.8 90 3 R arginine 6.0 93 5 S serine 7.2 111 3 T threonine 3.9 60 2 V valine 5.8 89 2 W tryptophan 1.6 25 2 Y tyrosine 2.3 36 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 jumonji, AT rich interactive domain 1D isoform 2 [Ho... KDM5D 0.995 jumonji, AT rich interactive domain 1D isoform 1 [H... KDM5D 0.929 jumonji, AT rich interactive domain 1D isoform 3 [H... KDM5C 0.850 jumonji, AT rich interactive domain 1C isoform 1 [H... KDM5C 0.741 jumonji, AT rich interactive domain 1C isoform 2 [H... KDM5A 0.463 retinoblastoma binding protein 2 isoform 1 KDM5A 0.463 retinoblastoma binding protein 2 isoform 2 KDM5B 0.416 jumonji, AT rich interactive domain 1B LOC100133760 0.352 PREDICTED: similar to Jumonji, AT rich interactive ... JARID2 0.038 jumonji, AT rich interactive domain 2 protein KDM4D 0.038 jumonji domain containing 2D LOC390245 0.037 PREDICTED: hypothetical protein LOC390245 0.037 PREDICTED: hypothetical protein LOC390245 0.037 PREDICTED: hypothetical protein LOC100129053 0.036 PREDICTED: hypothetical protein LOC100129053 0.036 PREDICTED: hypothetical protein LOC100129053 0.036 PREDICTED: hypothetical protein KDM4A 0.036 jumonji domain containing 2A KDM4C 0.035 jumonji domain containing 2C isoform 3 KDM4C 0.035 jumonji domain containing 2C isoform 4 KDM4C 0.035 jumonji domain containing 2C isoform 2 KDM4C 0.035 jumonji domain containing 2C isoform 1 KDM4B 0.035 jumonji domain containing 2B PHRF1 0.014 PHD and ring finger domains 1 DPF1 0.014 D4, zinc and double PHD fingers family 1 isoform c ... DPF1 0.014 D4, zinc and double PHD fingers family 1 isoform a ... BAZ1B 0.013 bromodomain adjacent to zinc finger domain, 1B [Homo... BAZ2B 0.013 bromodomain adjacent to zinc finger domain, 2B [Homo... DPF2 0.013 D4, zinc and double PHD fingers family 2 MLL2 0.013 myeloid/lymphoid or mixed-lineage leukemia 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.