KDM5B 33313

Name: KDM5B	Sequence: fasta or formatted (1544aa)		NCBI GI: 57242796
Description: jumonji, AT rich interactive domain 1B		Referenced in: Histones, Related Proteins, and Modifying Enzymes PHD Finger Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.5 100 2 C cysteine 3.6 55 2 D aspartate 5.4 84 2 E glutamate 8.6 133 4 F phenylalanine 3.0 46 1 G glycine 4.4 68 3 H histidine 2.3 36 2 I isoleucine 3.6 55 1 K lysine 6.8 105 4 L leucine 11.4 176 3 M methionine 2.3 36 2 N asparagine 3.3 51 2 P proline 6.5 101 3 Q glutamine 4.6 71 2 R arginine 6.3 98 3 S serine 6.9 106 2 T threonine 4.3 67 2 V valine 6.0 93 3 W tryptophan 1.6 25 1 Y tyrosine 2.5 38 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 jumonji, AT rich interactive domain 1B LOC100133760 0.637 PREDICTED: similar to Jumonji, AT rich interactive ... KDM5A 0.470 retinoblastoma binding protein 2 isoform 1 KDM5A 0.470 retinoblastoma binding protein 2 isoform 2 KDM5C 0.424 jumonji, AT rich interactive domain 1C isoform 1 [H... KDM5D 0.412 jumonji, AT rich interactive domain 1D isoform 2 [Ho... KDM5D 0.408 jumonji, AT rich interactive domain 1D isoform 1 [H... KDM5D 0.381 jumonji, AT rich interactive domain 1D isoform 3 [H... KDM5C 0.360 jumonji, AT rich interactive domain 1C isoform 2 [H... KDM4A 0.036 jumonji domain containing 2A KDM4D 0.036 jumonji domain containing 2D JARID2 0.035 jumonji, AT rich interactive domain 2 protein KDM4C 0.034 jumonji domain containing 2C isoform 3 LOC390245 0.034 PREDICTED: hypothetical protein LOC390245 0.034 PREDICTED: hypothetical protein LOC390245 0.034 PREDICTED: hypothetical protein KDM4C 0.034 jumonji domain containing 2C isoform 4 KDM4C 0.034 jumonji domain containing 2C isoform 2 KDM4C 0.034 jumonji domain containing 2C isoform 1 LOC100129053 0.034 PREDICTED: hypothetical protein LOC100129053 0.034 PREDICTED: hypothetical protein LOC100129053 0.034 PREDICTED: hypothetical protein KDM4B 0.034 jumonji domain containing 2B MLL2 0.016 myeloid/lymphoid or mixed-lineage leukemia 2 MLL3 0.015 myeloid/lymphoid or mixed-lineage leukemia 3 PHRF1 0.015 PHD and ring finger domains 1 RSF1 0.014 remodeling and spacing factor 1 BAZ1B 0.013 bromodomain adjacent to zinc finger domain, 1B [Homo... BAZ2A 0.013 bromodomain adjacent to zinc finger domain, 2A [Homo... BAZ2B 0.013 bromodomain adjacent to zinc finger domain, 2B [Homo... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.