Guide to the Human Genome
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Name: KDM5B Sequence: fasta or formatted (1544aa) NCBI GI: 57242796
Description:

jumonji, AT rich interactive domain 1B

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5        100           2
 C cysteine            3.6         55           2
 D aspartate           5.4         84           2
 E glutamate           8.6        133           4
 F phenylalanine       3.0         46           1
 G glycine             4.4         68           3
 H histidine           2.3         36           2
 I isoleucine          3.6         55           1
 K lysine              6.8        105           4
 L leucine            11.4        176           3
 M methionine          2.3         36           2
 N asparagine          3.3         51           2
 P proline             6.5        101           3
 Q glutamine           4.6         71           2
 R arginine            6.3         98           3
 S serine              6.9        106           2
 T threonine           4.3         67           2
 V valine              6.0         93           3
 W tryptophan          1.6         25           1
 Y tyrosine            2.5         38           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   jumonji, AT rich interactive domain 1B 
LOC100133760          0.637   PREDICTED: similar to Jumonji, AT rich interactive ...
KDM5A                 0.470   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.470   retinoblastoma binding protein 2 isoform 2 
KDM5C                 0.424   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5D                 0.412   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.408   jumonji, AT rich interactive domain 1D isoform 1 [H...
KDM5D                 0.381   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5C                 0.360   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM4A                 0.036   jumonji domain containing 2A 
KDM4D                 0.036   jumonji domain containing 2D 
JARID2                0.035   jumonji, AT rich interactive domain 2 protein 
KDM4C                 0.034   jumonji domain containing 2C isoform 3 
LOC390245             0.034   PREDICTED: hypothetical protein 
LOC390245             0.034   PREDICTED: hypothetical protein 
LOC390245             0.034   PREDICTED: hypothetical protein 
KDM4C                 0.034   jumonji domain containing 2C isoform 4 
KDM4C                 0.034   jumonji domain containing 2C isoform 2 
KDM4C                 0.034   jumonji domain containing 2C isoform 1 
LOC100129053          0.034   PREDICTED: hypothetical protein 
LOC100129053          0.034   PREDICTED: hypothetical protein 
LOC100129053          0.034   PREDICTED: hypothetical protein 
KDM4B                 0.034   jumonji domain containing 2B 
MLL2                  0.016   myeloid/lymphoid or mixed-lineage leukemia 2 
MLL3                  0.015   myeloid/lymphoid or mixed-lineage leukemia 3 
PHRF1                 0.015   PHD and ring finger domains 1 
RSF1                  0.014   remodeling and spacing factor 1 
BAZ1B                 0.013   bromodomain adjacent to zinc finger domain, 1B [Homo...
BAZ2A                 0.013   bromodomain adjacent to zinc finger domain, 2A [Homo...
BAZ2B                 0.013   bromodomain adjacent to zinc finger domain, 2B [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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