Guide to the Human Genome
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Name: ARID4A Sequence: fasta or formatted (1257aa) NCBI GI: 115334677
Description:

retinoblastoma-binding protein 1 isoform I

Referenced in:

Nonhistone Chromosomal Proteins
RB1 and Related Functions

Other entries for this name:
alt prot [1203aa] retinoblastoma-binding protein 1 isoform II
alt prot [1188aa] retinoblastoma-binding protein 1 isoform III
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         55           3
 C cysteine            1.4         17           1
 D aspartate           7.6         95           3
 E glutamate          13.4        169           4
 F phenylalanine       1.9         24           1
 G glycine             4.4         55           2
 H histidine           1.4         18           3
 I isoleucine          4.9         61           2
 K lysine             11.0        138           3
 L leucine             7.6         95           3
 M methionine          1.6         20           1
 N asparagine          4.7         59           1
 P proline             4.5         56           2
 Q glutamine           3.5         44           2
 R arginine            5.2         65           3
 S serine             10.0        126           4
 T threonine           4.9         62           2
 V valine              5.2         65           2
 W tryptophan          0.6          8           1
 Y tyrosine            2.0         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoblastoma-binding protein 1 isoform I 
ARID4A                0.935   retinoblastoma-binding protein 1 isoform II 
ARID4A                0.879   retinoblastoma-binding protein 1 isoform III 
ARID4B                0.365   AT rich interactive domain 4B isoform 1 
ARID4B                0.304   AT rich interactive domain 4B isoform 2 
ARID3B                0.024   AT rich interactive domain 3B 
ANKRD12               0.024   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.024   ankyrin repeat domain 12 isoform 1 
ARID3C                0.024   AT rich interactive domain 3C (BRIGHT- like) 
ARID5B                0.022   AT rich interactive domain 5B (MRF1-like) 
ARID3A                0.020   AT rich interactive domain 3A (BRIGHT- like) protein ...
RIF1                  0.019   RAP1 interacting factor 1 
NEFM                  0.019   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.019   neurofilament, medium polypeptide 150kDa isoform 2 ...
ARID5A                0.019   AT rich interactive domain 5A 
RBM25                 0.018   RNA binding motif protein 25 
LOC283685             0.018   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.018   PREDICTED: golgi autoantigen, golgin subfamily a-li...
NOLC1                 0.018   nucleolar and coiled-body phosphoprotein 1 
CCDC88A               0.018   coiled-coil domain containing 88A isoform 2 
RBBP6                 0.017   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.017   retinoblastoma-binding protein 6 isoform 1 
ARID1B                0.017   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.017   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
CCDC88A               0.017   coiled-coil domain containing 88A isoform 1 
CENPE                 0.017   centromere protein E 
BOD1L                 0.016   biorientation of chromosomes in cell division 1-like...
NEFH                  0.016   neurofilament, heavy polypeptide 200kDa 
CALD1                 0.016   caldesmon 1 isoform 1 
EIF5B                 0.016   eukaryotic translation initiation factor 5B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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