Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100133760 Sequence: fasta or formatted (977aa) NCBI GI: 169218173
Description:

PREDICTED: similar to Jumonji, AT rich interactive domain 1B (RBP2-like), partial

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         64           2
 C cysteine            3.6         35           1
 D aspartate           5.7         56           2
 E glutamate           8.7         85           4
 F phenylalanine       4.0         39           1
 G glycine             4.4         43           3
 H histidine           2.7         26           2
 I isoleucine          3.7         36           1
 K lysine              7.0         68           3
 L leucine            10.6        104           3
 M methionine          2.9         28           2
 N asparagine          3.5         34           2
 P proline             6.6         64           3
 Q glutamine           4.3         42           2
 R arginine            5.4         53           3
 S serine              5.3         52           2
 T threonine           4.5         44           2
 V valine              6.0         59           3
 W tryptophan          1.6         16           1
 Y tyrosine            3.0         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Jumonji, AT rich interactive ... 
KDM5B                 1.000   jumonji, AT rich interactive domain 1B 
KDM5A                 0.609   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.609   retinoblastoma binding protein 2 isoform 2 
KDM5C                 0.563   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5D                 0.548   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.540   jumonji, AT rich interactive domain 1D isoform 1 [H...
KDM5D                 0.499   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5C                 0.468   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM4A                 0.056   jumonji domain containing 2A 
KDM4D                 0.056   jumonji domain containing 2D 
JARID2                0.055   jumonji, AT rich interactive domain 2 protein 
KDM4C                 0.054   jumonji domain containing 2C isoform 3 
LOC390245             0.054   PREDICTED: hypothetical protein 
LOC390245             0.054   PREDICTED: hypothetical protein 
LOC390245             0.054   PREDICTED: hypothetical protein 
KDM4C                 0.054   jumonji domain containing 2C isoform 4 
KDM4C                 0.054   jumonji domain containing 2C isoform 2 
KDM4C                 0.054   jumonji domain containing 2C isoform 1 
LOC100129053          0.054   PREDICTED: hypothetical protein 
LOC100129053          0.054   PREDICTED: hypothetical protein 
LOC100129053          0.054   PREDICTED: hypothetical protein 
KDM4B                 0.054   jumonji domain containing 2B 
MLL2                  0.026   myeloid/lymphoid or mixed-lineage leukemia 2 
MLL3                  0.024   myeloid/lymphoid or mixed-lineage leukemia 3 
PHRF1                 0.024   PHD and ring finger domains 1 
RSF1                  0.022   remodeling and spacing factor 1 
BAZ1B                 0.021   bromodomain adjacent to zinc finger domain, 1B [Homo...
BAZ2A                 0.021   bromodomain adjacent to zinc finger domain, 2A [Homo...
BAZ2B                 0.020   bromodomain adjacent to zinc finger domain, 2B [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press