Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100130174 Sequence: fasta or formatted (625aa) NCBI GI: 239756174
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {627aa} PREDICTED: hypothetical protein
alt prot {627aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         92           9
 C cysteine            1.3          8           1
 D aspartate           2.4         15           1
 E glutamate          11.8         74           3
 F phenylalanine       1.0          6           1
 G glycine             5.8         36           2
 H histidine           1.8         11           1
 I isoleucine          1.1          7           1
 K lysine              2.9         18           1
 L leucine             8.8         55           4
 M methionine          1.0          6           1
 N asparagine          1.1          7           1
 P proline             5.3         33           3
 Q glutamine           6.1         38           2
 R arginine           17.0        106           3
 S serine             10.7         67           4
 T threonine           2.4         15           2
 V valine              3.5         22           1
 W tryptophan          0.5          3           1
 Y tyrosine            1.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130174          0.994   PREDICTED: hypothetical protein 
LOC100130174          0.994   PREDICTED: hypothetical protein 
TCHH                  0.065   trichohyalin 
MAP7D1                0.060   MAP7 domain containing 1 
LOC100133599          0.056   PREDICTED: hypothetical protein 
LOC100286959          0.054   PREDICTED: hypothetical protein XP_002343921 
INCENP                0.054   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.053   inner centromere protein antigens 135/155kDa isofor...
GIGYF2                0.052   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.052   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.052   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.052   GRB10 interacting GYF protein 2 isoform b 
LOC100131202          0.048   PREDICTED: hypothetical protein 
LOC100133599          0.047   PREDICTED: hypothetical protein 
PLEC1                 0.046   plectin 1 isoform 11 
PLEC1                 0.046   plectin 1 isoform 10 
PLEC1                 0.046   plectin 1 isoform 8 
PLEC1                 0.046   plectin 1 isoform 7 
PLEC1                 0.046   plectin 1 isoform 6 
PLEC1                 0.046   plectin 1 isoform 3 
PLEC1                 0.046   plectin 1 isoform 2 
PLEC1                 0.046   plectin 1 isoform 1 
ZC3H13                0.045   zinc finger CCCH-type containing 13 
C1orf65               0.044   hypothetical protein LOC164127 
RBM25                 0.044   RNA binding motif protein 25 
TCHP                  0.042   trichoplein 
TCHP                  0.042   trichoplein 
LOC100288837          0.041   PREDICTED: hypothetical protein XP_002343931, parti...
ENAH                  0.040   enabled homolog isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press