Search of human proteins with 5453634

Search of human proteins with 5453634

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5453634 dynein, cytoplasmic, light intermediate polypeptide
2 [Homo sapiens]
         (492 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5453634 dynein, cytoplasmic, light intermediate polypeptide 2...   988   0.0  
gi|166795297 dynein, cytoplasmic 1, light intermediate chain 1 [...   642   0.0  
gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo sa...    51   2e-06
gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo sa...    51   2e-06
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ...    42   0.001
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s...    42   0.001
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      40   0.005
gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo sa...    40   0.006
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      39   0.011
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    38   0.018
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    38   0.018
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 38   0.018
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    37   0.031
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    37   0.031
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    37   0.031
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       37   0.053
gi|87298828 complement component 1, q subcomponent, B chain prec...    36   0.070
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]       36   0.070
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]        36   0.070
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap...    36   0.070
gi|78042577 MAP7 domain containing 1 [Homo sapiens]                    36   0.070
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               36   0.091
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   36   0.091
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa...    36   0.091
gi|25777645 small conductance calcium-activated potassium channe...    36   0.091
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]          35   0.12 
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]     35   0.12 
gi|120953251 neuron navigator 3 [Homo sapiens]                         35   0.12 
gi|91208420 bassoon protein [Homo sapiens]                             35   0.16 
gi|5803080 macrophage receptor with collagenous structure [Homo ...    35   0.16 

>gi|5453634 dynein, cytoplasmic, light intermediate polypeptide 2
           [Homo sapiens]
          Length = 492

 Score =  988 bits (2553), Expect = 0.0
 Identities = 492/492 (100%), Positives = 492/492 (100%)

Query: 1   MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 60
           MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF
Sbjct: 1   MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 60

Query: 61  GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLK 120
           GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLK
Sbjct: 61  GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLK 120

Query: 121 FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKD 180
           FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKD
Sbjct: 121 FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKD 180

Query: 181 FQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVL 240
           FQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVL
Sbjct: 181 FQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVL 240

Query: 241 EKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA 300
           EKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA
Sbjct: 241 EKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA 300

Query: 301 LVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVHDKELAAEDEQ 360
           LVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVHDKELAAEDEQ
Sbjct: 301 LVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVHDKELAAEDEQ 360

Query: 361 VFLMKQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIK 420
           VFLMKQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIK
Sbjct: 361 VFLMKQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIK 420

Query: 421 NNAASEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRKPD 480
           NNAASEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRKPD
Sbjct: 421 NNAASEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRKPD 480

Query: 481 SMVTNSSTENEA 492
           SMVTNSSTENEA
Sbjct: 481 SMVTNSSTENEA 492


>gi|166795297 dynein, cytoplasmic 1, light intermediate chain 1
           [Homo sapiens]
          Length = 523

 Score =  642 bits (1655), Expect = 0.0
 Identities = 325/511 (63%), Positives = 392/511 (76%), Gaps = 21/511 (4%)

Query: 2   APVGVEKKLLLGPNGPAVAAA--GDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILV 59
           +P G+      GP G  +A+   G    ++E+GQ+LWS ILSEVSTR+RSKLP+GKN+L+
Sbjct: 13  SPPGLSSTYTGGPLGNEIASGNGGAAAGDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLL 72

Query: 60  FGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLL 119
            GEDG+GKT+L+ K+QG E  KKGRGLEYLYL+VHDEDRDD TRCNVWILDGDLYHKGLL
Sbjct: 73  LGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLL 132

Query: 120 KFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVK 179
           KF++ A SL +TLV+ V DMS+PWT ++SLQKWASV+REH+DK+KIPPE+M+++E+K ++
Sbjct: 133 KFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIR 192

Query: 180 DFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSV 239
           DFQ+Y+EP E    SPQRR   +    +++V LPLG + LTHNLGIPVLVVCTKCDA+SV
Sbjct: 193 DFQEYVEPGEDFPASPQRRNTASQEDKDDSVVLPLGADTLTHNLGIPVLVVCTKCDAISV 252

Query: 240 LEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTP 299
           LEKEHDYRDEH DFIQSH+R+FCLQYGAALIYTSVKE KN+DL+YKYIV K YGF +  P
Sbjct: 253 LEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIP 312

Query: 300 ALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVHDKELAAEDE 359
           A+VVEKDAVFIPAGWDN+KKI ILHENF T+K ED +ED I KPPVRK VH+KE+ AED+
Sbjct: 313 AVVVEKDAVFIPAGWDNDKKIGILHENFQTLKAEDNFEDIITKPPVRKFVHEKEIMAEDD 372

Query: 360 QVFLMKQQSLLAKQPATPT-RASESPARGPSGSPRTQGRGGPASVPSSSP-GTSVKKPDP 417
           QVFLMK QSLLAKQP T   R  ++  R P GSPRT  R   ++V S SP     KK DP
Sbjct: 373 QVFLMKLQSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDP 432

Query: 418 NIKNNAASEGVLASFFNSLLSKKTGSPGSP-------------GAGGVQSTAKKSGQKTV 464
           N+K  A SEGVLA+FFNSLLSKKTGSPG P             G+ G+  + KKSGQK V
Sbjct: 433 NMKAGATSEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSGQKPV 492

Query: 465 LSNVQEELDRMTRKPDSM---VTNSSTENEA 492
           L +V  ELDR+TRKP ++      S TE EA
Sbjct: 493 L-DVHAELDRITRKPVTVSPTTPTSPTEGEA 522


>gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo
           sapiens]
          Length = 351

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 63/294 (21%), Positives = 114/294 (38%), Gaps = 44/294 (14%)

Query: 33  QSLWSSILSEVSTRARSKLPSG------KNILVFGEDGSGKTTLMTK-LQGAEHGKKGRG 85
           ++LW    +EV  R  +           K +   G    GKTT++ + L   E  K    
Sbjct: 4   ETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLA 63

Query: 86  LEYLY---LSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRP 142
           LEY Y      H+  +D     + W L G      L+   ++ ++L    ++ V D+S+P
Sbjct: 64  LEYTYGRRAKGHNTPKDI---AHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP 120

Query: 143 WTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLT 202
             +  +++      + H+DK+ +   K+ +   K V + +  +                 
Sbjct: 121 NDLWPTMENLLQATKSHVDKVIM---KLGKTNAKAVSEMRQKI----------------- 160

Query: 203 SGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFC 262
                 N+     D+ L     +P++++ +K D         D+  E    I   LR   
Sbjct: 161 ----WNNMPKDHPDHELIDPFPVPLVIIGSKYDVF------QDFESEKRKVICKTLRFVA 210

Query: 263 LQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKDAVFIPAGWDN 316
             YGA+L++TS K E  L  +   I    +G   +    V +   +FI AG D+
Sbjct: 211 HYYGASLMFTS-KSEALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDS 263


>gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo
           sapiens]
          Length = 334

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 63/294 (21%), Positives = 114/294 (38%), Gaps = 44/294 (14%)

Query: 33  QSLWSSILSEVSTRARSKLPSG------KNILVFGEDGSGKTTLMTK-LQGAEHGKKGRG 85
           ++LW    +EV  R  +           K +   G    GKTT++ + L   E  K    
Sbjct: 4   ETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLA 63

Query: 86  LEYLY---LSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRP 142
           LEY Y      H+  +D     + W L G      L+   ++ ++L    ++ V D+S+P
Sbjct: 64  LEYTYGRRAKGHNTPKDI---AHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP 120

Query: 143 WTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLT 202
             +  +++      + H+DK+ +   K+ +   K V + +  +                 
Sbjct: 121 NDLWPTMENLLQATKSHVDKVIM---KLGKTNAKAVSEMRQKI----------------- 160

Query: 203 SGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFC 262
                 N+     D+ L     +P++++ +K D         D+  E    I   LR   
Sbjct: 161 ----WNNMPKDHPDHELIDPFPVPLVIIGSKYDVF------QDFESEKRKVICKTLRFVA 210

Query: 263 LQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKDAVFIPAGWDN 316
             YGA+L++TS K E  L  +   I    +G   +    V +   +FI AG D+
Sbjct: 211 HYYGASLMFTS-KSEALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDS 263


>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
           sapiens]
          Length = 1691

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 17/98 (17%)

Query: 373 QPATPTRASESPARGPSGSPRTQGRGGPASVPSSS--------PGTSVKKPDPNIKNNAA 424
           QP TP  +     +G SG P   G  G +  P           PG+ VKK  P +K    
Sbjct: 811 QPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPG 870

Query: 425 SEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
           + G++            GSPGSPG  G+ + +   G+K
Sbjct: 871 NPGLVGL---------KGSPGSPGVAGLPALSGPKGEK 899



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 387  GPSGSPRTQGRGGPASV---PSSSPGTSVKKPD---PNIKNNAASEGVLASFFNSLLSKK 440
            GP+G P  +G  G   +       PG   +K D   P ++  A   G       SL++ +
Sbjct: 1198 GPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGLPGAPGISLPSLIAGQ 1257

Query: 441  TGSPGSPGAGGVQSTAKKSG 460
             G PG PG  G +     +G
Sbjct: 1258 PGDPGRPGLDGERGRPGPAG 1277



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 18/109 (16%)

Query: 368  SLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSS--------PGTSVKKPDPNI 419
            SL+A QP  P R      RG  G     G  GP+S    +        PG    K D  I
Sbjct: 1252 SLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGPKGDQGI 1311

Query: 420  KNNAASEGVLA--------SFFNSLLSKKTGSPGSPGAGGVQSTAKKSG 460
               +   G L          F  +    K G PG PG  G++  A   G
Sbjct: 1312 PGFSGLPGELGLKGMRGEPGFMGT--PGKVGPPGDPGFPGMKGKAGPRG 1358



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 15/95 (15%)

Query: 387  GPSGSPRTQGRGGPASVPSSS---------------PGTSVKKPDPNIKNNAASEGVLAS 431
            GP G     GR GP  +P +                PG    +  P +K ++   G    
Sbjct: 984  GPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGM 1043

Query: 432  FFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLS 466
               S      GSPG PGA G+      +GQ   +S
Sbjct: 1044 PGESGSQGIRGSPGLPGASGLPGLKGDNGQTVEIS 1078



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 374  PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTS--VKKPDPNIKNNAASEGVLAS 431
            P +  +   S   G  G    +G  GP  +PS     S    K D   + +A S G    
Sbjct: 926  PGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSAGSNGFPGP 985

Query: 432  FFNSLLSKKTGSPGSPGAGGVQSTAK 457
              +   + + G PG PGA G+    K
Sbjct: 986  RGDKGEAGRPGPPGLPGAPGLPGIIK 1011


>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
           sapiens]
          Length = 1690

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 17/98 (17%)

Query: 373 QPATPTRASESPARGPSGSPRTQGRGGPASVPSSS--------PGTSVKKPDPNIKNNAA 424
           QP TP  +     +G SG P   G  G +  P           PG+ VKK  P +K    
Sbjct: 810 QPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPG 869

Query: 425 SEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
           + G++            GSPGSPG  G+ + +   G+K
Sbjct: 870 NPGLVGL---------KGSPGSPGVAGLPALSGPKGEK 898



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 387  GPSGSPRTQGRGGPASV---PSSSPGTSVKKPD---PNIKNNAASEGVLASFFNSLLSKK 440
            GP+G P  +G  G   +       PG   +K D   P ++  A   G       SL++ +
Sbjct: 1197 GPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGLPGAPGISLPSLIAGQ 1256

Query: 441  TGSPGSPGAGGVQSTAKKSG 460
             G PG PG  G +     +G
Sbjct: 1257 PGDPGRPGLDGERGRPGPAG 1276



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 18/109 (16%)

Query: 368  SLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSS--------PGTSVKKPDPNI 419
            SL+A QP  P R      RG  G     G  GP+S    +        PG    K D  I
Sbjct: 1251 SLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGPKGDQGI 1310

Query: 420  KNNAASEGVLA--------SFFNSLLSKKTGSPGSPGAGGVQSTAKKSG 460
               +   G L          F  +    K G PG PG  G++  A   G
Sbjct: 1311 PGFSGLPGELGLKGMRGEPGFMGT--PGKVGPPGDPGFPGMKGKAGPRG 1357



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 15/95 (15%)

Query: 387  GPSGSPRTQGRGGPASVPSSS---------------PGTSVKKPDPNIKNNAASEGVLAS 431
            GP G     GR GP  +P +                PG    +  P +K ++   G    
Sbjct: 983  GPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGM 1042

Query: 432  FFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLS 466
               S      GSPG PGA G+      +GQ   +S
Sbjct: 1043 PGESGSQGIRGSPGLPGASGLPGLKGDNGQTVEIS 1077



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 374  PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTS--VKKPDPNIKNNAASEGVLAS 431
            P +  +   S   G  G    +G  GP  +PS     S    K D   + +A S G    
Sbjct: 925  PGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSAGSNGFPGP 984

Query: 432  FFNSLLSKKTGSPGSPGAGGVQSTAK 457
              +   + + G PG PGA G+    K
Sbjct: 985  RGDKGEAGRPGPPGLPGAPGLPGIIK 1010


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 374  PATPTRASESPARGPSGSPRTQGRGGPASVP--SSSPGTSVKKPDPNIKNNAA---SEGV 428
            P  P  + E   +GPSG+   +G  GP   P  +  PG S ++  P  + +     S G 
Sbjct: 973  PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGA 1032

Query: 429  LASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
                  +  +   G+PG+PGA G    A KSG +
Sbjct: 1033 KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDR 1066



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 35/119 (29%), Positives = 44/119 (36%), Gaps = 18/119 (15%)

Query: 379 RASESPARGPSGSPRTQGRGGPASVPSSSPGT-SVKKPDPNIKNN----AASEGVLASFF 433
           R S  PA GP GSP   GR G A +P +   T S   P P+ K      A  +G      
Sbjct: 511 RGSPGPA-GPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDG------ 563

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRKPDSMVTNSSTENEA 492
                 + G PG PGA G        G K       +  +R    P   V  +  + EA
Sbjct: 564 ------RPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEA 616



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           PA P  A E   +GP+GSP  QG  GPA      PG + K  +  +  +  + G      
Sbjct: 624 PAGP--AGERGEQGPAGSPGFQGLPGPA----GPPGEAGKPGEQGVPGDLGAPGP----- 672

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
               S   G  G PG  GVQ     +G +
Sbjct: 673 ----SGARGERGFPGERGVQGPPGPAGPR 697



 Score = 32.7 bits (73), Expect = 0.77
 Identities = 25/89 (28%), Positives = 28/89 (31%), Gaps = 13/89 (14%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P  P        +GP G P   G  GP   P   PG   K  D          G      
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMG-PRGPPGPPGKNGDDGEAGKPGRPG------ 242

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
                 + G PG  GA G+  TA   G K
Sbjct: 243 ------ERGPPGPQGARGLPGTAGLPGMK 265



 Score = 31.6 bits (70), Expect = 1.7
 Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 370 LAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVK-KPDP-NIKNNAASEG 427
           +A  P  P     S  +GP G P  +G  G    P S   T  K +P P  ++      G
Sbjct: 405 IAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAG 464

Query: 428 VLASFFNSLLSKKTGSPGSPGAGG 451
                        TG PG PG  G
Sbjct: 465 EEGKRGARGEPGPTGLPGPPGERG 488



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 371 AKQPATPTRASESP-ARGPSGSPRTQGRGG-PASVPSSSPGTSVKKPDPNIKNNAASEGV 428
           A  PA    A   P A+G +G+P   G  G P +   S P      P P  K N+   G 
Sbjct: 381 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGP--KGNSGEPGA 438

Query: 429 LASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
             S         TG+ G PG  GVQ     +G++
Sbjct: 439 PGS------KGDTGAKGEPGPVGVQGPPGPAGEE 466



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 12/86 (13%)

Query: 379  RASESPARGPSGSPRTQGRGGPASV--PSSSPGTSVKKPDPNIKNNAASEGVLASFFNSL 436
            R    PA GP+G     G  GPA    P    G + ++ D  IK +    G         
Sbjct: 1066 RGETGPA-GPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSG--------- 1115

Query: 437  LSKKTGSPGSPGAGGVQSTAKKSGQK 462
            L    G PGSPG  G    +  +G +
Sbjct: 1116 LQGPPGPPGSPGEQGPSGASGPAGPR 1141



 Score = 30.0 bits (66), Expect = 5.0
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 17/93 (18%)

Query: 373 QPATPTRASESPARGPSGSPRTQGRGGPASVPS--------------SSPGTSVKKPDPN 418
           +P  P  +     RGP G P   G  G A  P                 PGT+     P 
Sbjct: 207 EPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGL---PG 263

Query: 419 IKNNAASEGVLASFFNSLLSKKTGSPGSPGAGG 451
           +K +    G+  +  ++  +   G PGSPG  G
Sbjct: 264 MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENG 296



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 387 GPSGSPRTQGRGG-PASV-PSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSP 444
           GP G P + G  G P  + P   PG   +   P       ++G   +      +   G P
Sbjct: 284 GPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343

Query: 445 GSPGAGGVQSTAKKSGQK 462
           G PGA G +  A   G +
Sbjct: 344 GFPGAVGAKGEAGPQGPR 361



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 23/85 (27%)

Query: 371 AKQPATPT--RASESP--ARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASE 426
           AK  A P   R SE P   RG  G P   G  GPA  P +          P  K    + 
Sbjct: 351 AKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGAD-------GQPGAKGANGAP 403

Query: 427 GVLASFFNSLLSKKTGSPGSPGAGG 451
           G+             G+PG PGA G
Sbjct: 404 GI------------AGAPGFPGARG 416


>gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo
           sapiens]
          Length = 201

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 13/141 (9%)

Query: 33  QSLWSSILSEVSTRARSKLPSG------KNILVFGEDGSGKTTLMTK-LQGAEHGKKGRG 85
           ++LW    +EV  R  +           K +   G    GKTT++ + L   E  K    
Sbjct: 4   ETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLA 63

Query: 86  LEYLY---LSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRP 142
           LEY Y      H+  +D     + W L G      L+   ++ ++L    ++ V D+S+P
Sbjct: 64  LEYTYGRRAKGHNTPKDI---AHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP 120

Query: 143 WTVMESLQKWASVLREHIDKM 163
             +  +++      + H+DK+
Sbjct: 121 NDLWPTMENLLQATKSHVDKV 141


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 22/89 (24%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P  P  A    ARG  G P + G  GP   PS SPG   K   P    N           
Sbjct: 866 PGGPGAAGFPGARGLPGPPGSNGNPGPPG-PSGSPG---KDGPPGPAGN----------- 910

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
                  TG+PGSPG  G +  A + G+K
Sbjct: 911 -------TGAPGSPGVSGPKGDAGQPGEK 932



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 16/78 (20%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P  P +  E   +G  G+P  +G GGP  V     G+    P          +GV     
Sbjct: 812 PGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGP-------PGPQGV----- 859

Query: 434 NSLLSKKTGSPGSPGAGG 451
                 + GSPG PGA G
Sbjct: 860 ----KGERGSPGGPGAAG 873



 Score = 34.7 bits (78), Expect = 0.20
 Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 385 ARGPSGSPRTQG----RGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKK 440
           ARGP G     G    RGG     +  PG +  K +P  +      G+           K
Sbjct: 412 ARGPPGPAGANGAPGLRGG-----AGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGK 466

Query: 441 TGSPGSPGAGGVQSTAKKSG 460
            GSPG PGA G+   A + G
Sbjct: 467 DGSPGEPGANGLPGAAGERG 486



 Score = 33.9 bits (76), Expect = 0.35
 Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 13/88 (14%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P +P         GP GS    GR GP       PG S  +  P +      +G      
Sbjct: 539 PGSPGGPGSDGKPGPPGSQGESGRPGP-------PGPSGPRGQPGVMGFPGPKG------ 585

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSGQ 461
           N     K G  G PG  G Q    K+G+
Sbjct: 586 NDGAPGKNGERGGPGGPGPQGPPGKNGE 613



 Score = 33.9 bits (76), Expect = 0.35
 Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 374  PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNI------KNNAASEG 427
            P  P         GP+G    +G  GPA  P+ +PG +  +  P        K      G
Sbjct: 1043 PGAPGHPGPPGPVGPAGKSGDRGESGPAG-PAGAPGPAGSRGAPGPQGPRGDKGETGERG 1101

Query: 428  VLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSG 460
                  +       G+PGSPG  G Q      G
Sbjct: 1102 AAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPG 1134



 Score = 32.3 bits (72), Expect = 1.0
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 387 GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGS 446
           GP G     G GGP       PG + K  +P  K +A + G      ++    + G PG 
Sbjct: 636 GPQGLQGLPGTGGP-------PGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGL 688

Query: 447 PGAGGVQSTAKKSG 460
            GA G++  A   G
Sbjct: 689 AGAPGLRGGAGPPG 702



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 16/108 (14%)

Query: 370  LAKQPATP-TRASESP--ARGPSGSPRTQGRGGPASVPSSS--PGTSVKKPDPNIKNNAA 424
            LA  P  P  R S  P   +G SG P   G  G    P     PG +    +P    N  
Sbjct: 958  LAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPG 1017

Query: 425  SEGVLASFFNSLLSK----------KTGSPGSPGAGGVQSTAKKSGQK 462
            S+G L     S   K            G+PG PG  G    A KSG +
Sbjct: 1018 SDG-LPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDR 1064



 Score = 30.0 bits (66), Expect = 5.0
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 19/69 (27%)

Query: 384 PARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGS 443
           P   P+  P  QG  GP   P   PG   +  DP I                    + GS
Sbjct: 91  PPTAPTRPPNGQGPQGPKGDPGP-PGIPGRNGDPGIPG------------------QPGS 131

Query: 444 PGSPGAGGV 452
           PGSPG  G+
Sbjct: 132 PGSPGPPGI 140



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVP-SSSPGTSVKKPDPNIKNNAASE----GV 428
           P  P       A G  G+P  +G  GP  +P    P      P P     AA E    GV
Sbjct: 470 PGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGV 529

Query: 429 LASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQ 461
                   +    G PGS G  G   +  +SG+
Sbjct: 530 PGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGR 562



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 13/65 (20%)

Query: 387 GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGS 446
           GP GSP  +G  GP   P+  PG   +  +P  K    + G            + G  G 
Sbjct: 792 GPRGSPGERGETGPPG-PAGFPGAPGQNGEPGGKGERGAPG------------EKGEGGP 838

Query: 447 PGAGG 451
           PG  G
Sbjct: 839 PGVAG 843



 Score = 29.3 bits (64), Expect = 8.5
 Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSS-----PGTSVKKPDPNIKNNAASEGV 428
           P  P +A  S   GP G P   G  GPA     S     PG       P IK  A   G 
Sbjct: 203 PGEPGQAGPS---GPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGF 259

Query: 429 LASFFNSLLSKKTGSPGSPGAGGVQ 453
                +     + G  G  GA G++
Sbjct: 260 PGMKGHRGFDGRNGEKGETGAPGLK 284



 Score = 29.3 bits (64), Expect = 8.5
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 387 GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASE------GVLASFFNSLLSKK 440
           G  GSP  +G  GPA  P S+ G   ++ +P  + +A ++      G+  S         
Sbjct: 342 GFPGSPGAKGEVGPAGSPGSN-GAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGP 400

Query: 441 TGSPGSPGAGGVQSTAKKSG 460
            G PG+PG  G +     +G
Sbjct: 401 AGIPGAPGLMGARGPPGPAG 420


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 17/82 (20%)

Query: 371 AKQPATPTRA-SESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVL 429
           AK  A PT A     A+GP G P T G  GPA   S +PGT      P  K +A + G+ 
Sbjct: 373 AKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGA-SGNPGTD---GIPGAKGSAGAPGI- 427

Query: 430 ASFFNSLLSKKTGSPGSPGAGG 451
                       G+PG PG  G
Sbjct: 428 -----------AGAPGFPGPRG 438



 Score = 33.5 bits (75), Expect = 0.45
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 367 QSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASV-----PSSSPGTSVKKPDPNIKN 421
           + L  K   T       PA GP+G    QG  GP+       P   PG   K  D  +  
Sbjct: 629 RGLPGKDGETGAAGPPGPA-GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG 687

Query: 422 NAASEGVLASFFNSLLSKKTGSPGSPGAGG 451
            A + G++          + GSPG+ G  G
Sbjct: 688 EAGAPGLVGPRGERGFPGERGSPGAQGLQG 717



 Score = 33.1 bits (74), Expect = 0.59
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 387 GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGS 446
           GPSG+P   GR GP       PG    +  P +      +G            K G  G 
Sbjct: 576 GPSGAPGEDGRPGP-------PGPQGARGQPGVMGFPGPKGANGE------PGKAGEKGL 622

Query: 447 PGAGGVQSTAKKSGQ 461
           PGA G++    K G+
Sbjct: 623 PGAPGLRGLPGKDGE 637



 Score = 33.1 bits (74), Expect = 0.59
 Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPS--SSPGTSVKKPDPNIKNNAASEGVLAS 431
           P TP       A GP+G P  QG  G   +P    + G +  K D         EG    
Sbjct: 722 PGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK 781

Query: 432 FFNSLLSKKTGSPGSPGAGG 451
                L+   G PG  GA G
Sbjct: 782 DGGRGLTGPIGPPGPAGANG 801



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 380 ASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSK 439
           A  + ARG  G P   G  GP   P+  PG       P  K  A   G            
Sbjct: 338 AGAAGARGNDGQPGPAGPPGPVG-PAGGPGFPGA---PGAKGEAGPTGARGPEGAQGPRG 393

Query: 440 KTGSPGSPGAGGVQSTAKKSG 460
           + G+PGSPG  G        G
Sbjct: 394 EPGTPGSPGPAGASGNPGTDG 414



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 373  QPATPTRASESPARGPSGSPRTQGRGGPASVPS--SSPGTSVKKPDPNIKNNAASEGVLA 430
            +P        S  RGP G     G  GPA  P    SPG       P  ++ AA  GV  
Sbjct: 1003 EPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGAD----GPPGRDGAA--GVKG 1056

Query: 431  SFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
                +      G+PG PG+ G      K G +
Sbjct: 1057 DRGETGAVGAPGAPGPPGSPGPAGPTGKQGDR 1088



 Score = 29.3 bits (64), Expect = 8.5
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 387 GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGS 446
           GP G P   G+ GP      S G   +  +P ++  A   G      +   S   G PG 
Sbjct: 915 GPPGPPGPSGKDGPKGARGDS-GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGP 973

Query: 447 PGAGGVQSTAKKSGQK 462
            G  G +      GQ+
Sbjct: 974 QGLAGQRGIVGLPGQR 989


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 17/82 (20%)

Query: 371 AKQPATPTRA-SESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVL 429
           AK  A PT A     A+GP G P T G  GPA   S +PGT      P  K +A + G+ 
Sbjct: 304 AKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGA-SGNPGTD---GIPGAKGSAGAPGI- 358

Query: 430 ASFFNSLLSKKTGSPGSPGAGG 451
                       G+PG PG  G
Sbjct: 359 -----------AGAPGFPGPRG 369



 Score = 33.5 bits (75), Expect = 0.45
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 367 QSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASV-----PSSSPGTSVKKPDPNIKN 421
           + L  K   T       PA GP+G    QG  GP+       P   PG   K  D  +  
Sbjct: 560 RGLPGKDGETGAAGPPGPA-GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG 618

Query: 422 NAASEGVLASFFNSLLSKKTGSPGSPGAGG 451
            A + G++          + GSPG+ G  G
Sbjct: 619 EAGAPGLVGPRGERGFPGERGSPGAQGLQG 648



 Score = 33.1 bits (74), Expect = 0.59
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 387 GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGS 446
           GPSG+P   GR GP       PG    +  P +      +G            K G  G 
Sbjct: 507 GPSGAPGEDGRPGP-------PGPQGARGQPGVMGFPGPKGANGE------PGKAGEKGL 553

Query: 447 PGAGGVQSTAKKSGQ 461
           PGA G++    K G+
Sbjct: 554 PGAPGLRGLPGKDGE 568



 Score = 33.1 bits (74), Expect = 0.59
 Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPS--SSPGTSVKKPDPNIKNNAASEGVLAS 431
           P TP       A GP+G P  QG  G   +P    + G +  K D         EG    
Sbjct: 653 PGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK 712

Query: 432 FFNSLLSKKTGSPGSPGAGG 451
                L+   G PG  GA G
Sbjct: 713 DGGRGLTGPIGPPGPAGANG 732



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 380 ASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSK 439
           A  + ARG  G P   G  GP   P+  PG       P  K  A   G            
Sbjct: 269 AGAAGARGNDGQPGPAGPPGPVG-PAGGPGFPGA---PGAKGEAGPTGARGPEGAQGPRG 324

Query: 440 KTGSPGSPGAGGVQSTAKKSG 460
           + G+PGSPG  G        G
Sbjct: 325 EPGTPGSPGPAGASGNPGTDG 345



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 373  QPATPTRASESPARGPSGSPRTQGRGGPASVPS--SSPGTSVKKPDPNIKNNAASEGVLA 430
            +P        S  RGP G     G  GPA  P    SPG       P  ++ AA  GV  
Sbjct: 934  EPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGAD----GPPGRDGAA--GVKG 987

Query: 431  SFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
                +      G+PG PG+ G      K G +
Sbjct: 988  DRGETGAVGAPGAPGPPGSPGPAGPTGKQGDR 1019



 Score = 29.3 bits (64), Expect = 8.5
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 387 GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGS 446
           GP G P   G+ GP      S G   +  +P ++  A   G      +   S   G PG 
Sbjct: 846 GPPGPPGPSGKDGPKGARGDS-GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGP 904

Query: 447 PGAGGVQSTAKKSGQK 462
            G  G +      GQ+
Sbjct: 905 QGLAGQRGIVGLPGQR 920


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 387 GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGS 446
           GPSG P   G  GP   P   PGT  +   P IK    + G + +   S +    G PG 
Sbjct: 770 GPSGDPGKPGLTGPQG-PQGLPGTPGR---PGIKGEPGAPGKIVTSEGSSMLTVPGPPGP 825

Query: 447 PGAGG 451
           PGA G
Sbjct: 826 PGAMG 830



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 362 FLMKQQSLLAKQPATP----TRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDP 417
           FL   ++ L+  P  P     +  + P  GP G    QG  G ++  SSS G +++ P P
Sbjct: 896 FLSNSETFLSGPPGPPGPPGPKGDQGPP-GPRGHQGEQGLPGFSTSGSSSFGLNLQGP-P 953

Query: 418 NIKNNAASEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVL 465
                   +G              G PG PGA G+ S   + G  + +
Sbjct: 954 GPPGPQGPKG------------DKGDPGVPGALGIPSGPSEGGSSSTM 989



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 10/90 (11%)

Query: 377 PTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSL 436
           P +   +  +GP G P T GR G    P  +PG  V     ++       G   +     
Sbjct: 775 PGKPGLTGPQGPQGLPGTPGRPGIKGEP-GAPGKIVTSEGSSMLTVPGPPGPPGAM---- 829

Query: 437 LSKKTGSPGSPGAGGVQSTAKKSGQKTVLS 466
                G PG PGA G    A   G + VL+
Sbjct: 830 -----GPPGPPGAPGPAGPAGLPGHQEVLN 854



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 386 RGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPG 445
           +GP G P  +G  GP S+P   PG     P   +       G   S   + LS   G PG
Sbjct: 856 QGPPGPPGPRGPPGP-SIPGP-PGPR-GPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPG 912

Query: 446 SPGAGGVQSTAKKSGQK 462
            PG  G Q      G +
Sbjct: 913 PPGPKGDQGPPGPRGHQ 929



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 374  PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
            P+ P+    S     SG P   G  GP    SSS G  +++          SE + +   
Sbjct: 977  PSGPSEGGSSSTMYVSGPPGPPGPPGPPGSISSS-GQEIQQ--------YISEYMQSDSI 1027

Query: 434  NSLLSKKTGSPGSPGAGGVQST 455
             S LS   G PG PG  G  +T
Sbjct: 1028 RSYLSGVQGPPGPPGPPGPVTT 1049


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 1691

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P  P       A GP G P   G  G    P S PG    +  P        +G   S  
Sbjct: 104 PGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGS-PGFPGLQGPPGPPGIPGMKGEPGSII 162

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSG 460
            S L    G+PG PG  G+Q     +G
Sbjct: 163 MSSLPGPKGNPGYPGPPGIQGLPGPTG 189



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 387  GPSGSPRTQGRGGPASVPSSSPGTSVKKPD---PNIKNNAASEGVLASFFNSLLSKKTGS 443
            GP G P   G  GP  +P  S  + + K D   P I      +G+        L   TG 
Sbjct: 1351 GPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP 1410

Query: 444  PGSPGAGGVQSTAKKSGQK 462
            PG PG  G+       G+K
Sbjct: 1411 PGDPGRNGLPGFDGAGGRK 1429



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 373 QPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASF 432
           QP  P       + G  G    +G+ G A+ P   PG       P    +    G + +F
Sbjct: 495 QPGLPGLPGPPGSLGFPGQKGEKGQAG-ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF 553

Query: 433 FNSLLSK-KTGSPGSPGAGGVQSTAKKSG 460
                 K + GSPG+PG  G+  T  + G
Sbjct: 554 PGMKGDKGELGSPGAPGLPGLPGTPGQDG 582



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 377 PTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPD-PNIKNNAASEGVLASFFNS 435
           P    E   +G +G+P   G  GP       PG ++ +P  P +  N   +G +    + 
Sbjct: 628 PGPVGEKGIQGVAGNPGQPGIPGP----KGDPGQTITQPGKPGLPGNPGRDGDVGLPGDP 683

Query: 436 LLSKKTGSPGSPGAGG 451
            L  + G PG PG+ G
Sbjct: 684 GLPGQPGLPGIPGSKG 699



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 365  KQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAA 424
            K Q  L   P TP         GP G+P   G  GP       PG   +   P  K    
Sbjct: 1115 KGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVG-GGGHPG---QPGPPGEKGKPG 1170

Query: 425  SEGVLASFFNSLLSKKTGSPGSPGAG--GVQSTAKKSGQK 462
             +G+         + + G PG PG G  G       SGQK
Sbjct: 1171 QDGIPGP------AGQKGEPGQPGFGNPGPPGLPGLSGQK 1204



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 387  GPSGSPRTQGRGGPASVPS--SSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSP 444
            GP G P   G  G    P    SPG +++ P  N            + F  L   + G P
Sbjct: 1220 GPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPE-GPP 1278

Query: 445  GSPGAGGVQSTAKKSGQ 461
            G PG GG++      GQ
Sbjct: 1279 GLPGNGGIKGEKGNPGQ 1295



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 374  PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
            P  P         GP G P   G GG       +PG       P +K +    G+  +  
Sbjct: 1260 PGRPGPTGFQGLPGPEGPPGLPGNGGIKG-EKGNPGQPGLPGLPGLKGDQGPPGLQGNPG 1318

Query: 434  NSLLSKKTGSPGSPGAGGVQSTAKKSG 460
               L+   G PG PG  G       SG
Sbjct: 1319 RPGLNGMKGDPGLPGVPGFPGMKGPSG 1345



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 12/77 (15%)

Query: 386 RGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPG 445
           RGP G P   G  GP   P    G   ++ +P  +     +G          + + G PG
Sbjct: 266 RGPPGPP---GIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE---------NGQPGIPG 313

Query: 446 SPGAGGVQSTAKKSGQK 462
            PG  G      + G+K
Sbjct: 314 LPGDPGYPGEPGRDGEK 330



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 387  GPSGSPRTQGRGGPASVPSSS----PGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTG 442
            G  GSP   G+ G    P  S    PG    K +P +     + G+  S  +  L    G
Sbjct: 1051 GQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPG 1110

Query: 443  SPGSPGAGGV 452
            +PG+ G  G+
Sbjct: 1111 TPGAKGQPGL 1120


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
           sapiens]
          Length = 1685

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P  P       A GP G P   G  G    P S PG    +  P        +G   S  
Sbjct: 104 PGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGS-PGFPGLQGPPGPPGIPGMKGEPGSII 162

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSG 460
            S L    G+PG PG  G+Q     +G
Sbjct: 163 MSSLPGPKGNPGYPGPPGIQGLPGPTG 189



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 387  GPSGSPRTQGRGGPASVPSSSPGTSVKKPD---PNIKNNAASEGVLASFFNSLLSKKTGS 443
            GP G P   G  GP  +P  S  + + K D   P I      +G+        L   TG 
Sbjct: 1345 GPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP 1404

Query: 444  PGSPGAGGVQSTAKKSGQK 462
            PG PG  G+       G+K
Sbjct: 1405 PGDPGRNGLPGFDGAGGRK 1423



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 374  PATPTRASESPA-----RGPSGSPRTQGRGGPASVPSS--------SPGTSVKKPDPNIK 420
            P +P  A E P      +GP G P   G  GP  +P +        +PG       P +K
Sbjct: 1240 PGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLK 1299

Query: 421  NNAASEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSG 460
             +    G+  +     L+   G PG PG  G       SG
Sbjct: 1300 GDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSG 1339



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 373 QPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASF 432
           QP  P       + G  G    +G+ G A+ P   PG       P    +    G + +F
Sbjct: 495 QPGLPGLPGPPGSLGFPGQKGEKGQAG-ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF 553

Query: 433 FNSLLSK-KTGSPGSPGAGGVQSTAKKSG 460
                 K + GSPG+PG  G+  T  + G
Sbjct: 554 PGMKGDKGELGSPGAPGLPGLPGTPGQDG 582



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 377 PTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPD-PNIKNNAASEGVLASFFNS 435
           P    E   +G +G+P   G  GP       PG ++ +P  P +  N   +G +    + 
Sbjct: 628 PGPVGEKGIQGVAGNPGQPGIPGP----KGDPGQTITQPGKPGLPGNPGRDGDVGLPGDP 683

Query: 436 LLSKKTGSPGSPGAGG 451
            L  + G PG PG+ G
Sbjct: 684 GLPGQPGLPGIPGSKG 699



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 387  GPSGSPRTQGRGGPASVPS--SSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSP 444
            GP G P   G  G    P    SPG +++ P    K N   +G         L    G P
Sbjct: 1220 GPKGEPGFHGFPGVQGPPGPPGSPGPALEGP----KGNPGPQGPPG---RPGLPGPEGPP 1272

Query: 445  GSPGAGGVQSTAKKSGQ 461
            G PG GG++      GQ
Sbjct: 1273 GLPGNGGIKGEKGNPGQ 1289



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 365  KQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAA 424
            K Q  L   P TP         GP G+P   G  GP       PG   +   P  K    
Sbjct: 1115 KGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVG-GGGHPG---QPGPPGEKGKPG 1170

Query: 425  SEGVLASFFNSLLSKKTGSPGSPGAG--GVQSTAKKSGQK 462
             +G+         + + G PG PG G  G       SGQK
Sbjct: 1171 QDGIPGP------AGQKGEPGQPGFGNPGPPGLPGLSGQK 1204



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 12/77 (15%)

Query: 386 RGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPG 445
           RGP G P   G  GP   P    G   ++ +P  +     +G          + + G PG
Sbjct: 266 RGPPGPP---GIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE---------NGQPGIPG 313

Query: 446 SPGAGGVQSTAKKSGQK 462
            PG  G      + G+K
Sbjct: 314 LPGDPGYPGEPGRDGEK 330



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 387  GPSGSPRTQGRGGPASVPSSS----PGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTG 442
            G  GSP   G+ G    P  S    PG    K +P +     + G+  S  +  L    G
Sbjct: 1051 GQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPG 1110

Query: 443  SPGSPGAGGV 452
            +PG+ G  G+
Sbjct: 1111 TPGAKGQPGL 1120


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
           sapiens]
          Length = 1688

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P  P       A GP G P   G  G    P S PG    +  P        +G   S  
Sbjct: 104 PGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGS-PGFPGLQGPPGPPGIPGMKGEPGSII 162

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSG 460
            S L    G+PG PG  G+Q     +G
Sbjct: 163 MSSLPGPKGNPGYPGPPGIQGLPGPTG 189



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 387  GPSGSPRTQGRGGPASVPSSSPGTSVKKPD---PNIKNNAASEGVLASFFNSLLSKKTGS 443
            GP G P   G  GP  +P  S  + + K D   P I      +G+        L   TG 
Sbjct: 1348 GPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP 1407

Query: 444  PGSPGAGGVQSTAKKSGQK 462
            PG PG  G+       G+K
Sbjct: 1408 PGDPGRNGLPGFDGAGGRK 1426



 Score = 33.5 bits (75), Expect = 0.45
 Identities = 28/103 (27%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 374  PATPTRASESPA-----RGPSGSPRTQGRGGPASVP-----------SSSPGTSVKKPDP 417
            P +P  A E P      +GP G P  QG  GP   P             +PG       P
Sbjct: 1240 PGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLP 1299

Query: 418  NIKNNAASEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSG 460
             +K +    G+  +     L+   G PG PG  G       SG
Sbjct: 1300 GLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSG 1342



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 373 QPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASF 432
           QP  P       + G  G    +G+ G A+ P   PG       P    +    G + +F
Sbjct: 495 QPGLPGLPGPPGSLGFPGQKGEKGQAG-ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF 553

Query: 433 FNSLLSK-KTGSPGSPGAGGVQSTAKKSG 460
                 K + GSPG+PG  G+  T  + G
Sbjct: 554 PGMKGDKGELGSPGAPGLPGLPGTPGQDG 582



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 377 PTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPD-PNIKNNAASEGVLASFFNS 435
           P    E   +G +G+P   G  GP       PG ++ +P  P +  N   +G +    + 
Sbjct: 628 PGPVGEKGIQGVAGNPGQPGIPGP----KGDPGQTITQPGKPGLPGNPGRDGDVGLPGDP 683

Query: 436 LLSKKTGSPGSPGAGG 451
            L  + G PG PG+ G
Sbjct: 684 GLPGQPGLPGIPGSKG 699



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 387  GPSGSPRTQGRGGPA-SVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPG 445
            G  G P   G  GPA   P  +PG       P  +     EG      N  +  + G+PG
Sbjct: 1232 GVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPG 1291

Query: 446  SPGAGGVQSTAKKSGQKTVLSN 467
             PG  G+       G   +  N
Sbjct: 1292 QPGLPGLPGLKGDQGPPGLQGN 1313



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 365  KQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAA 424
            K Q  L   P TP         GP G+P   G  GP       PG   +   P  K    
Sbjct: 1115 KGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVG-GGGHPG---QPGPPGEKGKPG 1170

Query: 425  SEGVLASFFNSLLSKKTGSPGSPGAG--GVQSTAKKSGQK 462
             +G+         + + G PG PG G  G       SGQK
Sbjct: 1171 QDGIPGP------AGQKGEPGQPGFGNPGPPGLPGLSGQK 1204



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 12/77 (15%)

Query: 386 RGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPG 445
           RGP G P   G  GP   P    G   ++ +P  +     +G          + + G PG
Sbjct: 266 RGPPGPP---GIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE---------NGQPGIPG 313

Query: 446 SPGAGGVQSTAKKSGQK 462
            PG  G      + G+K
Sbjct: 314 LPGDPGYPGEPGRDGEK 330



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 387  GPSGSPRTQGRGGPASVPSSS----PGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTG 442
            G  GSP   G+ G    P  S    PG    K +P +     + G+  S  +  L    G
Sbjct: 1051 GQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPG 1110

Query: 443  SPGSPGAGGV 452
            +PG+ G  G+
Sbjct: 1111 TPGAKGQPGL 1120


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 385 ARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSP 444
           A+GP+GSP T G  G A  P  SPG         I+      GV           + G  
Sbjct: 430 AKGPTGSPGTSGPPGSAG-PPGSPGPQGSTGPQGIRGQPGDPGVPG------FKGEAGPK 482

Query: 445 GSPGAGGVQSTAKKSGQK 462
           G PG  G+Q      G++
Sbjct: 483 GEPGPHGIQGPIGPPGEE 500



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 25/77 (32%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 386 RGPSGSPRTQGRGGPASVPSSS--PGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGS 443
           RG  G P   G  GP  +P SS  PG    K +         EG       +      GS
Sbjct: 356 RGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGS 415

Query: 444 PGSPGAGGVQSTAKKSG 460
           PG PGA G   T    G
Sbjct: 416 PGLPGAIGTDGTPGAKG 432



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSS--PGTSVKKPDPNIKNNAASEGVLAS 431
           P     A  + ARGP G    +G  GP     S   PG       P  K    S G    
Sbjct: 383 PGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGT--- 439

Query: 432 FFNSLLSKKTGSPGSPGAGGVQSTAKKSG 460
                 S   GS G PG+ G Q +    G
Sbjct: 440 ------SGPPGSAGPPGSPGPQGSTGPQG 462



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 373 QPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASF 432
           QP       E   +G +GSP  QG  G       SPG       P +K    ++G   + 
Sbjct: 856 QPGVKGEPGEPGQKGDAGSPGPQGLAG-------SPGPHGPNGVPGLKGGRGTQGPPGAT 908

Query: 433 FNSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
                + + G PG  GA G      + G++
Sbjct: 909 GFPGSAGRVGPPGPAGAPGPAGPLGEPGKE 938



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 25/84 (29%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 371 AKQPATPTRASESP-ARGPSGSPRTQGRGGPASV--PSSSPGTSVKKPDPNIKNNAASEG 427
           AK P      S  P + GP GSP  QG  GP  +      PG    K +   K      G
Sbjct: 430 AKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHG 489

Query: 428 VLASFFNSLLSKKTGSPGSPGAGG 451
           +           K G  G PG  G
Sbjct: 490 IQGPIGPPGEEGKRGPRGDPGTVG 513



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 382 ESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKT 441
           E   RGP G P T G  GP      +PG         +     ++G      +S      
Sbjct: 499 EEGKRGPRGDPGTVGPPGPVG-ERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQ 557

Query: 442 GSPGSPGAGGVQSTAKKSGQKTV 464
           G PG PG  G+      +G   V
Sbjct: 558 GDPGRPGEPGLPGARGLTGNPGV 580



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P  P       ARG +G+P  QG  G    P  +PG   +   P       S G+     
Sbjct: 560 PGRPGEPGLPGARGLTGNPGVQGPEGKLG-PLGAPGEDGRPGPP------GSIGIRGQPG 612

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
           +  L    GS G PG  G    A   GQ+
Sbjct: 613 SMGLPGPKGSSGDPGKPGEAGNAGVPGQR 641



 Score = 30.0 bits (66), Expect = 5.0
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P  P  A  +   G  G+P   G  GP S P   PG + ++ +         +G+     
Sbjct: 626 PGKPGEAGNAGVPGQRGAPGKDGEVGP-SGPVGPPGLAGERGEQGPPGPTGFQGL----- 679

Query: 434 NSLLSKKTGSPGSPGAGG 451
                   G PG PG GG
Sbjct: 680 -------PGPPGPPGEGG 690


>gi|87298828 complement component 1, q subcomponent, B chain
           precursor [Homo sapiens]
          Length = 253

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 36/127 (28%), Positives = 48/127 (37%), Gaps = 16/127 (12%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVP--SSSPGTSVKKPDPNIKNNAASEGVLAS 431
           PA P         GP G P T G  G   +P  +   G   +K DP I  N    G    
Sbjct: 35  PAIPGIPGIPGTPGPDGQPGTPGIKGEKGLPGLAGDHGEFGEKGDPGIPGNPGKVGPKGP 94

Query: 432 FFNSLLSKKTGSPGSPGA-------GGVQSTAKKSGQKTVLSNVQEELDRMTRKPDSMVT 484
                     G PG+PGA       G  ++T K +   T   NV    D+ T + D ++T
Sbjct: 95  M------GPKGGPGAPGAPGPKGESGDYKATQKIAFSATRTINVPLRRDQ-TIRFDHVIT 147

Query: 485 NSSTENE 491
           N +   E
Sbjct: 148 NMNNNYE 154


>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
          Length = 957

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 386 RGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPG 445
           +G  G P   G  G    P + PG+   K +P I+    + G+            TGSPG
Sbjct: 631 KGAPGMPGLMGSNGSPGQPGT-PGSKGSKGEPGIQGMPGASGLKGE------PGATGSPG 683

Query: 446 SPGAGGVQSTAKKSGQK 462
            PG  G+     K G K
Sbjct: 684 EPGYMGLPGIQGKKGDK 700



 Score = 32.7 bits (73), Expect = 0.77
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPS--SSPGTSVKKPDPNIKNNAASEGVLAS 431
           P  P        +G  G P  QG+ G   +P    S G+  +   P  K +    G+   
Sbjct: 607 PGFPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGM 666

Query: 432 FFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEE 471
              S L  + G+ GSPG  G        G+K    N  E+
Sbjct: 667 PGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGEK 706



 Score = 31.6 bits (70), Expect = 1.7
 Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 387 GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGS 446
           GPS    T     P   P   PG    K DP +  N    G              G+PG 
Sbjct: 433 GPSDVGSTPA---PCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGV 489

Query: 447 PGAGGVQSTAKKSGQK 462
           PG+ G+Q      G K
Sbjct: 490 PGSPGIQGARGLPGYK 505



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 24/89 (26%), Positives = 29/89 (32%), Gaps = 10/89 (11%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P  P         G  G P  QG  G   VP  SPG    +  P  K     +G      
Sbjct: 460 PGLPGNPGYPGQPGQDGKPGYQGIAGTPGVP-GSPGIQGARGLPGYKGEPGRDGDKGD-- 516

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
                   G PG PG  G+  +  + G K
Sbjct: 517 -------RGLPGFPGLHGMPGSKGEMGAK 538


>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
          Length = 1604

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 374  PATPTRASESPARGPSGSPRTQGRGGPASV--PSSSPGTSVKKPDPNIKNNAASEGVLAS 431
            P           RGPSG P + G  GP  +  P+   G   K   P ++ +    G    
Sbjct: 1179 PGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGL 1238

Query: 432  FFNSLLSKKTGSPGSPGAGG 451
                    KTG PG PG  G
Sbjct: 1239 MGPPGFKGKTGHPGLPGPKG 1258



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 14/95 (14%)

Query: 374  PATPTRASESPARGPSGSPRTQG----RGGPASV----PSSSPGTSVKKPDPNIKNNAAS 425
            P  P  A     RGP G+   +G    +G P       P   PG       P  +    S
Sbjct: 1128 PGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGS 1187

Query: 426  EGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSG 460
            EG+         S   GSPG PG  G+Q  A   G
Sbjct: 1188 EGIRGP------SGLPGSPGPPGPPGIQGPAGLDG 1216



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 24/84 (28%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 377  PTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSL 436
            P    E  A GP G P   G  GP   P       +          A  E  LA      
Sbjct: 1272 PGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQ- 1330

Query: 437  LSKKTGSPGSPGAGGVQSTAKKSG 460
                 G PG PG  G    A K G
Sbjct: 1331 -PGPPGHPGPPGEPGTDGAAGKEG 1353



 Score = 31.6 bits (70), Expect = 1.7
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 374  PATPTRASESPARGPSGSPRTQGRGGPASVPSS--SPGTSVKKPDPNIKNNAASEGVLAS 431
            P  P +  E    G  GSP   G  GP   P +  SPG    + +  +      +G    
Sbjct: 1026 PGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGP 1085

Query: 432  FFNSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
                     TG PG PG  G +     +G+K
Sbjct: 1086 PGQPGYPGATGPPGLPGIKGERGYTGSAGEK 1116



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 28/111 (25%), Positives = 38/111 (34%), Gaps = 8/111 (7%)

Query: 374  PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNA------ASEG 427
            P  P       A G  G P  QG  GP   P   PG + +K     K  A         G
Sbjct: 1337 PGPPGEPGTDGAAGKEGPPGKQGFYGPPG-PKGDPGAAGQKGQAGEKGRAGMPGGPGKSG 1395

Query: 428  VLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRK 478
             +        + + G PG+PG  G        G    + N  +E+ R  R+
Sbjct: 1396 SMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVN-YDEIKRFIRQ 1445



 Score = 30.0 bits (66), Expect = 5.0
 Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 21/101 (20%)

Query: 364 MKQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGP-----------ASVPSSSPGTSV 412
           +K Q   A  P  P     +   G SG P  QG  GP            S+  +    + 
Sbjct: 680 LKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAG 739

Query: 413 KKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGSPGAGGVQ 453
           +   P  K     EGV           + G PG PG  GVQ
Sbjct: 740 RPGQPGPKGEQGPEGV----------GRPGKPGQPGLPGVQ 770



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 387 GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGS 446
           GP+GSP   G  GPA +  +       +P P + N    +G +        S + G PG 
Sbjct: 608 GPAGSPGPPGPVGPAGIKGAKGEPC--EPCPALSN--LQDGDVRVVALPGPSGEKGEPGP 663

Query: 447 PGAG--GVQSTAKKSGQK 462
           PG G  G Q  A + G K
Sbjct: 664 PGFGLPGKQGKAGERGLK 681


>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
           sapiens]
          Length = 443

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 371 AKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLA 430
           A+ PA P R + +P R P+  P      GP ++P +SPG   ++P P  +  A   G   
Sbjct: 30  AEPPALPARPASAPQRHPAPVPARW--PGPGALPGASPGVRRRRP-PRPRPRAGRRGA-- 84

Query: 431 SFFNSLLSKKTGSPGSP 447
               + L K    PG P
Sbjct: 85  ----ARLEKLARRPGEP 97


>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
          Length = 841

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 22/139 (15%)

Query: 343 PPVRKLVHDKELAAEDEQVFLMKQQSLLAKQ--PATPTRASESPARGPSGSPRTQGRGG- 399
           P  +K   DKE   E E+  L +++SL  +Q  PA+P RA  S +     SP+++ R   
Sbjct: 411 PVQKKEKKDKERENEKEKSALARERSLKKRQSLPASP-RARLSASTASELSPKSKARPSS 469

Query: 400 -------PAS-VPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGSPGAGG 451
                  PAS  PS  PG ++    P+ +   AS           + +K  +  SP A G
Sbjct: 470 PSTSWHRPASPCPSPGPGHTLPPKPPSPRGTTASP-------KGRVRRKEEAKESPSAAG 522

Query: 452 VQSTAKKSGQKTVLSNVQE 470
            +    KS  K   SN +E
Sbjct: 523 PED---KSQSKRRASNEKE 538


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 35.8 bits (81), Expect = 0.091
 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P  P       ARGP G P   G  G   +P   PG   +K DP +    A +G      
Sbjct: 639 PGLPGLPGIPGARGPRGPPGPYGNPG---LPGP-PGAKGQKGDPGLSPGKAHDGAKGDMG 694

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
              LS   G PG  G  G    A   G++
Sbjct: 695 LPGLSGNPGPPGRKGHKGYPGPAGHPGEQ 723



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 14/98 (14%)

Query: 373  QPATPTRASESPARGPSGSPRTQG----RGGPASVPSSSP----GTSVKKPDPNIKNNAA 424
            +P  P  A      GP G+P  QG    RG P     S P    G    + DP       
Sbjct: 1157 EPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHG 1216

Query: 425  SEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
             +G         L  + G PG PG  GV+    KSG++
Sbjct: 1217 EKG------QEGLMGEDGPPGPPGVTGVRGPEGKSGKQ 1248



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 14/97 (14%)

Query: 370 LAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSS-----PGTSVKKPDPNIKNNAA 424
           L+  P  P R       GP+G P  QG+ GP   P +       G      DP  K +  
Sbjct: 698 LSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRG 757

Query: 425 SEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQ 461
             G+   F         G PGS G  G+     K G+
Sbjct: 758 YIGLPGLF---------GLPGSDGERGLPGVPGKRGK 785



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 23/76 (30%), Positives = 26/76 (34%), Gaps = 18/76 (23%)

Query: 387  GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGS 446
            GP G    QG  G A  P   PG      D     +    G            + G PG 
Sbjct: 1324 GPKGEKGEQGEDGKAEGPPGPPG------DRGPVGDRGDRG------------EPGDPGY 1365

Query: 447  PGAGGVQSTAKKSGQK 462
            PG  GVQ    K GQ+
Sbjct: 1366 PGQEGVQGLRGKPGQQ 1381


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 35.8 bits (81), Expect = 0.091
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFF 433
           P  P +A +   RGP G    +G  G    P  +PG +    +P +       GV     
Sbjct: 258 PGAPGKAGDRGERGPEGFRGPKGDLGRPG-PKGTPGVAGPSGEPGMPGKDGQNGVPGLDG 316

Query: 434 NSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
               + + G+PG  G  G+     ++G K
Sbjct: 317 QKGEAGRNGAPGEKGPNGLPGLPGRAGSK 345


>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
           sapiens]
          Length = 601

 Score = 35.8 bits (81), Expect = 0.091
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 376 TPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNS 435
           TP +A + PA   + SP T     PAS PS++P +      P+   +A+S+    S    
Sbjct: 84  TPQKAQD-PAAATASSPSTPD---PASAPSTTPASPATPAQPSTSGSASSDAGSGS---- 135

Query: 436 LLSKKTGSPGSPGAGGVQSTAKKS 459
              + +G   SPGAG    +A  S
Sbjct: 136 --RRSSGGGPSPGAGEGSPSATAS 157


>gi|25777645 small conductance calcium-activated potassium channel
           protein 2 isoform a [Homo sapiens]
          Length = 579

 Score = 35.8 bits (81), Expect = 0.091
 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 375 ATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFN 434
           A P +   S   G   S  +      A+V SS+P   V KP+ N  NN A  G       
Sbjct: 31  AQPLQPPASVGGGGGASSPSAAAAAAAAVSSSAPEIVVSKPEHNNSNNLALYGTGGG--- 87

Query: 435 SLLSKKTGSPGSPGAGGVQSTAKKSGQKT 463
                  GS G  G GG       SG K+
Sbjct: 88  -------GSTGGGGGGGGSGHGSSSGTKS 109


>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
          Length = 1192

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 11/101 (10%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNN------AASEG 427
           P  P  +       P+ SP T      A  P  +P  +++ P P +K        +  + 
Sbjct: 283 PGPPAGSPPPLTLPPTPSPATAVTAASAQPPGPAPPITLEPPAPGLKRGREGGRASTRDR 342

Query: 428 VLASFFNSLLSKKTGSPGSPGAG---GVQSTAKKSGQKTVL 465
            +  F + + +K TG P  PG+G   G  S +  SG + +L
Sbjct: 343 KMLKFISGIFTKSTGGP--PGSGPLPGPPSLSSGSGSRELL 381


>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
          Length = 1712

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 386  RGPSGSPRTQGRGG--PASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGS 443
            RGP GSP  QG  G  P S  S +PG         +K      G   S         TG+
Sbjct: 1256 RGPPGSPGLQGFPGITPPSNISGAPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTGN 1315

Query: 444  PGSPGAGGVQSTAKKSG 460
            PG+PG  G +  A  SG
Sbjct: 1316 PGAPGTPGTKGWAGDSG 1332



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 370 LAKQPATPTRASESPARGPSGS---PRTQGRGGPASVPS-----SSPGTSVKKPDPNIKN 421
           L  QP  P  + +    GP G    P   G+ GP  +P        PG      D     
Sbjct: 819 LKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPG 878

Query: 422 NAASEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQK 462
               +G+     ++  + + G PGSPG  G+       G K
Sbjct: 879 PVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPGTPGLK 919


>gi|120953251 neuron navigator 3 [Homo sapiens]
          Length = 2363

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 10/168 (5%)

Query: 329 TVKPEDAYEDFIVKPPVRKLVHDKELAAEDEQVFLMKQQSLLAKQPATPTRASESPARGP 388
           T KP    +D + +   +K      L  +  +    K++SL+      P   S+ P    
Sbjct: 480 TEKPVKEEKDQVTEMAPKKTSKIASLIPKGSKTTAAKKESLIPSSSGIPKPGSKVPTVKQ 539

Query: 389 SGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGSPG 448
           + SP     G  AS  S    T+   P  ++      E   AS   + L  +     SP 
Sbjct: 540 TISP-----GSTASKESEKFRTTKGSPSQSLSKPITMEKASASSCPAPLEGREAGQASPS 594

Query: 449 AGGVQSTAKKSGQKTVLSNVQEELDRMTRKPDS-----MVTNSSTENE 491
                + A+ SGQ T    VQ    +    P++      +  + +ENE
Sbjct: 595 GSCTMTVAQSSGQSTGNGAVQLPQQQQHSHPNTATVAPFIYRAHSENE 642


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 368 SLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEG 427
           S+  K+   PT+A   P   P  +P        + V  + P T V K  P       +E 
Sbjct: 604 SVQEKKTRVPTKAEPMPKPPPETTPTPATPKVKSGVRRAEPATPVVKAVPEAPKGGEAED 663

Query: 428 VLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRM 475
           ++   ++   S+   SP S    G  S    S Q  +   VQ+E++++
Sbjct: 664 LVGKPYSQDASR---SPQSLSDTGYSSDGISSSQSEITGVVQQEVEQL 708


>gi|5803080 macrophage receptor with collagenous structure [Homo
           sapiens]
          Length = 520

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 374 PATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVK--KPDPNIKNNAASEGVLAS 431
           P  P       A+G  GS  + GR G    P S   T +K  K D  ++     +G    
Sbjct: 309 PGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATGLKGSKGDTGLQGQQGRKGESGV 368

Query: 432 FFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEE 471
              + +  + GSPG  G  G    A + G + V  +  E+
Sbjct: 369 PGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGSSGEQ 408



 Score = 33.5 bits (75), Expect = 0.45
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 16/88 (18%)

Query: 373 QPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASF 432
           +P  P  A    A+G  G P  QG  GP       PG    K +P    +    G+    
Sbjct: 284 RPGPPGLAGFPGAKGDQGQPGLQGVPGPPGA-VGHPGA---KGEPGSAGSPGRAGL---- 335

Query: 433 FNSLLSKKTGSPGSPGAGGVQSTAKKSG 460
                    GSPGSPGA G++ +   +G
Sbjct: 336 --------PGSPGSPGATGLKGSKGDTG 355



 Score = 33.5 bits (75), Expect = 0.45
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 379 RASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGV 428
           R  ES   GP+G    QG  G A  P  +PG + +K D  +K ++  +GV
Sbjct: 362 RKGESGVPGPAGVKGEQGSPGLAG-PKGAPGQAGQKGDQGVKGSSGEQGV 410



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 387 GPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGS 446
           GP G   T+G  G   +P S  G    K D  +     ++G    F         G PG 
Sbjct: 238 GPKGETGTKGEKGDLGLPGSK-GDRGMKGDAGVMGPPGAQGSKGDF---------GRPGP 287

Query: 447 PGAGGVQSTAKKSGQ 461
           PG  G        GQ
Sbjct: 288 PGLAGFPGAKGDQGQ 302



 Score = 30.0 bits (66), Expect = 5.0
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 19/95 (20%)

Query: 370 LAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVL 429
           L   P +P       ++G +G    QGR G + VP  +           +K    S G  
Sbjct: 335 LPGSPGSPGATGLKGSKGDTGLQGQQGRKGESGVPGPA----------GVKGEQGSPG-- 382

Query: 430 ASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTV 464
                  L+   G+PG  G  G Q     SG++ V
Sbjct: 383 -------LAGPKGAPGQAGQKGDQGVKGSSGEQGV 410


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,546,119
Number of Sequences: 37866
Number of extensions: 1122495
Number of successful extensions: 7483
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 263
Number of HSP's that attempted gapping in prelim test: 5986
Number of HSP's gapped (non-prelim): 1590
length of query: 492
length of database: 18,247,518
effective HSP length: 106
effective length of query: 386
effective length of database: 14,233,722
effective search space: 5494216692
effective search space used: 5494216692
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.