Guide to the Human Genome
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Name: DYNC1LI1 Sequence: fasta or formatted (523aa) NCBI GI: 166795297
Description:

dynein, cytoplasmic 1, light intermediate chain 1

Referenced in:

Dynein and Dynactin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         35           3
 C cysteine            1.0          5           1
 D aspartate           7.1         37           2
 E glutamate           5.9         31           2
 F phenylalanine       2.9         15           2
 G glycine             9.2         48           3
 H histidine           1.9         10           1
 I isoleucine          4.8         25           2
 K lysine              8.0         42           2
 L leucine             8.8         46           3
 M methionine          1.5          8           1
 N asparagine          3.4         18           1
 P proline             7.1         37           2
 Q glutamine           3.3         17           1
 R arginine            3.8         20           2
 S serine              8.6         45           2
 T threonine           4.8         25           2
 V valine              7.8         41           3
 W tryptophan          1.0          5           1
 Y tyrosine            2.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dynein, cytoplasmic 1, light intermediate chain 1 [... 
DYNC1LI2              0.601   dynein, cytoplasmic, light intermediate polypeptide 2...
DYNC2LI1              0.029   dynein 2 light intermediate chain isoform 1 
DYNC2LI1              0.029   dynein 2 light intermediate chain isoform 3 
DYNC2LI1              0.019   dynein 2 light intermediate chain isoform 2 
MAGEE1                0.015   melanoma antigen family E, 1 
AGAP2                 0.015   centaurin, gamma 1 isoform PIKE-L 
YEATS2                0.013   YEATS domain containing 2 
JUB                   0.013   ajuba isoform 1 
SYNPO2                0.012   synaptopodin 2 isoform c 
SP8                   0.012   Sp8 transcription factor isoform 1 
SP8                   0.012   Sp8 transcription factor isoform 2 
HOXD9                 0.012   homeobox D9 
GSK3A                 0.012   glycogen synthase kinase 3 alpha 
ZNF281                0.012   zinc finger protein 281 
FOXO1                 0.012   forkhead box O1 
SOX3                  0.012   SRY (sex determining region Y)-box 3 
CACNG8                0.012   voltage-dependent calcium channel gamma-8 subunit [H...
POU3F2                0.011   POU domain, class 3, transcription factor 2 
ZAN                   0.011   zonadhesin isoform 3 
ZAN                   0.011   zonadhesin isoform 6 
SIX3                  0.011   sine oculis homeobox homolog 3 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.011   PREDICTED: hypothetical protein LOC80164 
UPF1                  0.011   regulator of nonsense transcripts 1 
C13orf23              0.011   hypothetical protein LOC80209 isoform 2 
C13orf23              0.011   hypothetical protein LOC80209 isoform 1 
RALY                  0.011   RNA binding protein (autoantigenic, hnRNP-associated ...
RALY                  0.011   RNA binding protein (autoantigenic, hnRNP-associated...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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