Guide to the Human Genome
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Name: DDIT3 Sequence: fasta or formatted (169aa) NCBI GI: 21361118
Description:

DNA-damage-inducible transcript 3

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         14           2
 C cysteine            0.0          0           0
 D aspartate           3.6          6           1
 E glutamate          18.3         31           5
 F phenylalanine       1.8          3           1
 G glycine             4.1          7           2
 H histidine           1.8          3           1
 I isoleucine          1.8          3           1
 K lysine              4.7          8           1
 L leucine             8.3         14           1
 M methionine          1.8          3           1
 N asparagine          3.0          5           1
 P proline             5.3          9           2
 Q glutamine           6.5         11           1
 R arginine            7.1         12           2
 S serine             11.2         19           2
 T threonine           5.9         10           2
 V valine              3.6          6           1
 W tryptophan          1.8          3           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DNA-damage-inducible transcript 3 
CEBPD                 0.084   CCAAT/enhancer binding protein delta 
CEBPA                 0.065   CCAAT/enhancer binding protein alpha 
CEBPG                 0.065   CCAAT/enhancer binding protein gamma 
RGAG4                 0.061   retrotransposon gag domain containing 4 
CEBPB                 0.061   CCAAT/enhancer binding protein beta 
INCENP                0.061   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.061   inner centromere protein antigens 135/155kDa isofor...
TCHH                  0.058   trichohyalin 
BATF3                 0.055   basic leucine zipper transcription factor, ATF-like 3...
WDR87                 0.055   NYD-SP11 protein 
LOC100294088          0.052   PREDICTED: hypothetical protein, partial 
LOC100289089          0.048   PREDICTED: hypothetical protein XP_002343359 
FAM133A               0.048   hypothetical protein LOC286499 
NEFM                  0.048   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.048   neurofilament, medium polypeptide 150kDa isoform 2 ...
CEBPE                 0.048   CCAAT/enhancer binding protein epsilon 
CALD1                 0.048   caldesmon 1 isoform 1 
CHAF1A                0.048   chromatin assembly factor 1, subunit A (p150) 
CDC2L1                0.048   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.048   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LOC283685             0.045   PREDICTED: golgi autoantigen, golgin subfamily a-li...
EVPL                  0.045   envoplakin 
BRD4                  0.045   bromodomain-containing protein 4 isoform long 
SEPT7                 0.045   cell division cycle 10 isoform 1 
SEPT7                 0.045   cell division cycle 10 isoform 2 
FAM133B               0.045   hypothetical protein LOC257415 isoform 2 
FAM133B               0.045   hypothetical protein LOC257415 isoform 1 
CNKSR1                0.045   connector enhancer of kinase suppressor of Ras 1 [H...
NUMA1                 0.045   nuclear mitotic apparatus protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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