Guide to the Human Genome
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Name: CD200 Sequence: fasta or formatted (269aa) NCBI GI: 90903247
Description:

CD200 antigen isoform a precursor

Referenced in:

Macrophages and Monocytes

Other entries for this name:
alt prot [294aa] CD200 antigen isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         12           2
 C cysteine            2.6          7           1
 D aspartate           2.6          7           1
 E glutamate           4.5         12           1
 F phenylalanine       3.7         10           1
 G glycine             4.1         11           1
 H histidine           3.0          8           1
 I isoleucine          6.7         18           1
 K lysine              5.6         15           3
 L leucine            10.4         28           3
 M methionine          2.2          6           1
 N asparagine          4.8         13           1
 P proline             4.5         12           1
 Q glutamine           5.6         15           1
 R arginine            3.0          8           1
 S serine              7.8         21           1
 T threonine           8.6         23           2
 V valine             10.8         29           2
 W tryptophan          2.2          6           1
 Y tyrosine            3.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD200 antigen isoform a precursor 
CD200                 0.985   CD200 antigen isoform b 
PVRL3                 0.092   poliovirus receptor-related 3 
PVRL1                 0.084   poliovirus receptor-related 1 isoform 3 
PVRL1                 0.084   poliovirus receptor-related 1 isoform 2 
PVRL1                 0.084   poliovirus receptor-related 1 isoform 1 
PVRL2                 0.058   poliovirus receptor related 2 isoform alpha precursor...
PVRL2                 0.058   poliovirus receptor related 2 isoform delta precurs...
PVR                   0.056   poliovirus receptor isoform delta 
PVR                   0.056   poliovirus receptor isoform gamma 
PVR                   0.056   poliovirus receptor isoform beta 
PVR                   0.056   poliovirus receptor isoform alpha 
PVRL4                 0.056   poliovirus receptor-related 4 
ICOSLG                0.033   inducible T-cell co-stimulator ligand 
GPA33                 0.031   transmembrane glycoprotein A33 precursor 
MXRA5                 0.031   adlican 
IGSF10                0.031   immunoglobulin superfamily, member 10 
PDCD1LG2              0.029   programmed cell death 1 ligand 2 
CRTAM                 0.029   class-I MHC-restricted T cell associated molecule [H...
DCC                   0.027   deleted in colorectal carcinoma 
HMCN1                 0.027   hemicentin 1 
ROBO1                 0.027   roundabout 1 isoform b 
CD276                 0.027   CD276 antigen isoform a 
ROBO1                 0.027   roundabout 1 isoform a 
CADM3                 0.027   cell adhesion molecule 3 isoform 2 
LRRC4C                0.027   netrin-G1 ligand 
BTN2A1                0.027   butyrophilin, subfamily 2, member A1 isoform 1 precur...
BTN2A1                0.027   butyrophilin, subfamily 2, member A1 isoform 2 precu...
NCAM2                 0.025   neural cell adhesion molecule 2 precursor 
NTM                   0.025   neurotrimin isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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