Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD200 Sequence: fasta or formatted (294aa) NCBI GI: 90903245
Description:

CD200 antigen isoform b

Referenced in:

Macrophages and Monocytes

Other entries for this name:
alt prot [269aa] CD200 antigen isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         13           2
 C cysteine            2.4          7           1
 D aspartate           2.7          8           1
 E glutamate           4.1         12           1
 F phenylalanine       3.4         10           1
 G glycine             4.8         14           2
 H histidine           2.7          8           1
 I isoleucine          6.8         20           1
 K lysine              5.4         16           3
 L leucine            11.2         33           3
 M methionine          2.0          6           1
 N asparagine          4.8         14           1
 P proline             4.4         13           1
 Q glutamine           5.4         16           1
 R arginine            3.1          9           1
 S serine              7.1         21           1
 T threonine          10.2         30           2
 V valine              9.9         29           2
 W tryptophan          2.0          6           1
 Y tyrosine            3.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD200 antigen isoform b 
CD200                 0.902   CD200 antigen isoform a precursor 
PVRL3                 0.084   poliovirus receptor-related 3 
PVRL1                 0.077   poliovirus receptor-related 1 isoform 3 
PVRL1                 0.077   poliovirus receptor-related 1 isoform 2 
PVRL1                 0.077   poliovirus receptor-related 1 isoform 1 
PVRL2                 0.053   poliovirus receptor related 2 isoform alpha precursor...
PVRL2                 0.053   poliovirus receptor related 2 isoform delta precurs...
PVR                   0.051   poliovirus receptor isoform delta 
PVR                   0.051   poliovirus receptor isoform gamma 
PVR                   0.051   poliovirus receptor isoform beta 
PVR                   0.051   poliovirus receptor isoform alpha 
PVRL4                 0.051   poliovirus receptor-related 4 
ICOSLG                0.030   inducible T-cell co-stimulator ligand 
GPA33                 0.028   transmembrane glycoprotein A33 precursor 
MXRA5                 0.028   adlican 
IGSF10                0.028   immunoglobulin superfamily, member 10 
PDCD1LG2              0.026   programmed cell death 1 ligand 2 
CRTAM                 0.026   class-I MHC-restricted T cell associated molecule [H...
DCC                   0.025   deleted in colorectal carcinoma 
HMCN1                 0.025   hemicentin 1 
ROBO1                 0.025   roundabout 1 isoform b 
CD276                 0.025   CD276 antigen isoform a 
ROBO1                 0.025   roundabout 1 isoform a 
CADM3                 0.025   cell adhesion molecule 3 isoform 2 
NCAM2                 0.025   neural cell adhesion molecule 2 precursor 
LRRC4C                0.025   netrin-G1 ligand 
BTN2A1                0.025   butyrophilin, subfamily 2, member A1 isoform 1 precur...
BTN2A1                0.025   butyrophilin, subfamily 2, member A1 isoform 2 precu...
NTM                   0.023   neurotrimin isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press