Guide to the Human Genome
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Name: OR8J1 Sequence: fasta or formatted (316aa) NCBI GI: 52353298
Description:

olfactory receptor, family 8, subfamily J, member 1

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         17           2
 C cysteine            3.5         11           1
 D aspartate           2.5          8           2
 E glutamate           2.2          7           1
 F phenylalanine       7.0         22           2
 G glycine             3.5         11           2
 H histidine           1.3          4           1
 I isoleucine          7.0         22           2
 K lysine              3.5         11           3
 L leucine            14.2         45           3
 M methionine          4.4         14           2
 N asparagine          4.7         15           1
 P proline             3.5         11           1
 Q glutamine           1.9          6           1
 R arginine            2.8          9           2
 S serine              9.8         31           2
 T threonine           7.6         24           2
 V valine              9.8         31           3
 W tryptophan          0.0          0           0
 Y tyrosine            5.4         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 8, subfamily J, member 1 ... 
OR8J3                 0.881   olfactory receptor, family 8, subfamily J, member 3 ...
OR8K3                 0.579   olfactory receptor, family 8, subfamily K, member 3 ...
OR5R1                 0.560   olfactory receptor, family 5, subfamily R, member 1 ...
OR8U8                 0.557   olfactory receptor, family 8, subfamily U, member 8 ...
OR8U1                 0.554   olfactory receptor, family 8, subfamily U, member 1 ...
OR8K5                 0.552   olfactory receptor, family 8, subfamily K, member 5...
OR8U9                 0.542   olfactory receptor, family 8, subfamily U, member 9 ...
OR8K1                 0.527   olfactory receptor, family 8, subfamily K, member 1 ...
OR5B12                0.493   olfactory receptor, family 5, subfamily B, member 12...
OR5AS1                0.493   olfactory receptor, family 5, subfamily AS, member 1...
OR5I1                 0.487   olfactory receptor, family 5, subfamily I, member 1 [...
OR8D1                 0.485   olfactory receptor, family 8, subfamily D, member 1 ...
OR8G1                 0.485   olfactory receptor, family 8, subfamily G, member 1 ...
OR5AR1                0.485   olfactory receptor, family 5, subfamily AR, member 1...
OR5M11                0.483   olfactory receptor, family 5, subfamily M, member 11...
OR5AP2                0.482   olfactory receptor, family 5, subfamily AP, member 2...
OR5F1                 0.480   olfactory receptor, family 5, subfamily F, member 1 ...
OR5D18                0.480   olfactory receptor, family 5, subfamily D, member 18...
OR8I2                 0.478   olfactory receptor, family 8, subfamily I, member 2 ...
OR8A1                 0.475   olfactory receptor, family 8, subfamily A, member 1 ...
OR8B8                 0.475   olfactory receptor, family 8, subfamily B, member 8 ...
OR8G5                 0.475   olfactory receptor, family 8, subfamily G, member 5 ...
OR5L2                 0.473   olfactory receptor, family 5, subfamily L, member 2 ...
OR5B21                0.473   olfactory receptor, family 5, subfamily B, member 21...
OR8B3                 0.471   olfactory receptor, family 8, subfamily B, member 3 ...
OR8B2                 0.470   olfactory receptor, family 8, subfamily B, member 2 ...
OR8D4                 0.468   olfactory receptor, family 8, subfamily D, member 4 ...
OR8B12                0.468   olfactory receptor, family 8, subfamily B, member 12...
OR8D2                 0.466   olfactory receptor, family 8, subfamily D, member 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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