Guide to the Human Genome
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Name: OR8U1 Sequence: fasta or formatted (309aa) NCBI GI: 52353304
Description:

olfactory receptor, family 8, subfamily U, member 1

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         20           1
 C cysteine            3.6         11           1
 D aspartate           3.2         10           2
 E glutamate           1.9          6           1
 F phenylalanine       8.1         25           2
 G glycine             3.2         10           1
 H histidine           2.6          8           1
 I isoleucine          9.1         28           3
 K lysine              3.6         11           2
 L leucine            13.9         43           3
 M methionine          5.5         17           1
 N asparagine          4.2         13           1
 P proline             3.2         10           1
 Q glutamine           2.9          9           1
 R arginine            2.3          7           1
 S serine              8.4         26           3
 T threonine           6.1         19           1
 V valine              6.1         19           2
 W tryptophan          0.3          1           1
 Y tyrosine            5.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 8, subfamily U, member 1 ... 
OR8U8                 0.956   olfactory receptor, family 8, subfamily U, member 8 ...
OR8U9                 0.936   olfactory receptor, family 8, subfamily U, member 9 ...
OR5R1                 0.678   olfactory receptor, family 5, subfamily R, member 1 ...
OR5B12                0.560   olfactory receptor, family 5, subfamily B, member 12...
OR8J3                 0.556   olfactory receptor, family 8, subfamily J, member 3 ...
OR8K1                 0.556   olfactory receptor, family 8, subfamily K, member 1 ...
OR8J1                 0.556   olfactory receptor, family 8, subfamily J, member 1 ...
OR8K3                 0.556   olfactory receptor, family 8, subfamily K, member 3 ...
OR8K5                 0.553   olfactory receptor, family 8, subfamily K, member 5...
OR8D1                 0.551   olfactory receptor, family 8, subfamily D, member 1 ...
OR5AR1                0.551   olfactory receptor, family 5, subfamily AR, member 1...
OR5M11                0.535   olfactory receptor, family 5, subfamily M, member 11...
OR5AP2                0.531   olfactory receptor, family 5, subfamily AP, member 2...
OR8B8                 0.531   olfactory receptor, family 8, subfamily B, member 8 ...
OR8D2                 0.531   olfactory receptor, family 8, subfamily D, member 2 ...
OR5B3                 0.530   olfactory receptor, family 5, subfamily B, member 3 ...
OR5B21                0.530   olfactory receptor, family 5, subfamily B, member 21...
OR5T3                 0.524   olfactory receptor, family 5, subfamily T, member 3 ...
OR5B2                 0.524   olfactory receptor, family 5, subfamily B, member 2 ...
OR5T1                 0.523   olfactory receptor, family 5, subfamily T, member 1 ...
OR5M10                0.523   olfactory receptor, family 5, subfamily M, member 10...
OR5M8                 0.521   olfactory receptor, family 5, subfamily M, member 8 ...
OR8D4                 0.521   olfactory receptor, family 8, subfamily D, member 4 ...
OR5AS1                0.519   olfactory receptor, family 5, subfamily AS, member 1...
OR5M1                 0.514   olfactory receptor, family 5, subfamily M, member 1 ...
OR8G1                 0.513   olfactory receptor, family 8, subfamily G, member 1 ...
OR8I2                 0.511   olfactory receptor, family 8, subfamily I, member 2 ...
OR8A1                 0.509   olfactory receptor, family 8, subfamily A, member 1 ...
OR5J2                 0.509   olfactory receptor, family 5, subfamily J, member 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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