Guide to the Human Genome
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Name: OR8A1 Sequence: fasta or formatted (326aa) NCBI GI: 52353348
Description:

olfactory receptor, family 8, subfamily A, member 1

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         17           2
 C cysteine            3.4         11           1
 D aspartate           1.5          5           1
 E glutamate           2.8          9           1
 F phenylalanine       5.8         19           2
 G glycine             4.9         16           1
 H histidine           2.8          9           2
 I isoleucine          7.7         25           2
 K lysine              3.7         12           1
 L leucine            14.4         47           3
 M methionine          5.2         17           1
 N asparagine          3.4         11           1
 P proline             4.0         13           2
 Q glutamine           1.8          6           1
 R arginine            2.5          8           2
 S serine              9.8         32           2
 T threonine           8.0         26           2
 V valine              7.4         24           2
 W tryptophan          0.0          0           0
 Y tyrosine            5.8         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 8, subfamily A, member 1 ... 
OR8G5                 0.626   olfactory receptor, family 8, subfamily G, member 5 ...
OR8D2                 0.623   olfactory receptor, family 8, subfamily D, member 2 ...
OR8G1                 0.610   olfactory receptor, family 8, subfamily G, member 1 ...
OR8D4                 0.605   olfactory receptor, family 8, subfamily D, member 4 ...
OR8G2                 0.604   olfactory receptor, family 8, subfamily G, member 2 ...
OR8B3                 0.599   olfactory receptor, family 8, subfamily B, member 3 ...
OR8D1                 0.594   olfactory receptor, family 8, subfamily D, member 1 ...
OR8B2                 0.589   olfactory receptor, family 8, subfamily B, member 2 ...
OR8B8                 0.571   olfactory receptor, family 8, subfamily B, member 8 ...
OR8B12                0.559   olfactory receptor, family 8, subfamily B, member 12...
OR8B4                 0.525   olfactory receptor, family 8, subfamily B, member 4 ...
OR8I2                 0.496   olfactory receptor, family 8, subfamily I, member 2 ...
OR5R1                 0.494   olfactory receptor, family 5, subfamily R, member 1 ...
OR8U9                 0.486   olfactory receptor, family 8, subfamily U, member 9 ...
OR8U1                 0.485   olfactory receptor, family 8, subfamily U, member 1 ...
OR8U8                 0.485   olfactory receptor, family 8, subfamily U, member 8 ...
OR5B12                0.482   olfactory receptor, family 5, subfamily B, member 12...
OR5AU1                0.470   olfactory receptor, family 5, subfamily AU, member 1...
OR5F1                 0.470   olfactory receptor, family 5, subfamily F, member 1 ...
OR5AR1                0.469   olfactory receptor, family 5, subfamily AR, member 1...
OR8J3                 0.467   olfactory receptor, family 8, subfamily J, member 3 ...
OR8K1                 0.465   olfactory receptor, family 8, subfamily K, member 1 ...
OR5M8                 0.464   olfactory receptor, family 5, subfamily M, member 8 ...
OR8H1                 0.462   olfactory receptor, family 8, subfamily H, member 1 ...
OR8K3                 0.459   olfactory receptor, family 8, subfamily K, member 3 ...
OR8H2                 0.457   olfactory receptor, family 8, subfamily H, member 2 ...
OR8J1                 0.454   olfactory receptor, family 8, subfamily J, member 1 ...
OR5M11                0.454   olfactory receptor, family 5, subfamily M, member 11...
OR8H3                 0.453   olfactory receptor, family 8, subfamily H, member 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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