Guide to the Human Genome
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Name: LOC100294238 Sequence: fasta or formatted (1612aa) NCBI GI: 239740777
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2        132           2
 C cysteine            0.4          7           1
 D aspartate           1.2         20           1
 E glutamate           9.7        156           1
 F phenylalanine       1.2         19           2
 G glycine             9.2        149           2
 H histidine           1.2         19           1
 I isoleucine          3.2         51           2
 K lysine              0.7         11           1
 L leucine             2.0         33           1
 M methionine          1.8         29           1
 N asparagine          1.2         20           1
 P proline             2.2         36           2
 Q glutamine           0.5          8           1
 R arginine            0.8         13           1
 S serine             17.6        284           3
 T threonine          33.0        532           5
 V valine              4.8         77           2
 W tryptophan          0.2          4           1
 Y tyrosine            0.7         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729792             0.997   PREDICTED: hypothetical protein 
LOC100294204          0.925   PREDICTED: hypothetical protein 
LOC729792             0.922   PREDICTED: hypothetical protein 
LOC100294501          0.922   PREDICTED: hypothetical protein 
LOC730401             0.922   PREDICTED: hypothetical protein 
LOC100294249          0.922   PREDICTED: hypothetical protein XP_002344067 
LOC729792             0.920   PREDICTED: hypothetical protein 
LOC100294136          0.920   PREDICTED: hypothetical protein 
LOC100294091          0.920   PREDICTED: hypothetical protein 
MUC2                  0.156   mucin 2 precursor 
MUC17                 0.139   mucin 17 
MUC12                 0.124   PREDICTED: mucin 12 
MUC5B                 0.114   mucin 5, subtype B, tracheobronchial 
MUC12                 0.114   PREDICTED: mucin 12, cell surface associated 
MUC5AC                0.110   mucin 5AC 
MUC12                 0.105   PREDICTED: mucin 12 
LOC100294236          0.102   PREDICTED: similar to diffuse panbronchiolitis crit...
MUC4                  0.095   mucin 4 isoform a 
MUC3A                 0.085   PREDICTED: mucin 3A, intestinal 
LOC100131514          0.085   PREDICTED: similar to hCG1747327, partial 
MUC6                  0.083   mucin 6, gastric 
MUC16                 0.082   mucin 16 
LOC100134138          0.076   PREDICTED: similar to mucin, partial 
MUC3A                 0.072   PREDICTED: mucin 3A, cell surface associated, parti...
DPCR1                 0.066   diffuse panbronchiolitis critical region 1 protein ...
LOC100133714          0.063   PREDICTED: similar to Mucin-12, partial 
MUC21                 0.062   mucin 21 
GPR112                0.058   G-protein coupled receptor 112 
DSPP                  0.053   dentin sialophosphoprotein preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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