Guide to the Human Genome
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Name: KIAA1219 Sequence: fasta or formatted (1494aa) NCBI GI: 34787409
Description:

hypothetical protein LOC57148

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         83           2
 C cysteine            2.1         31           2
 D aspartate           4.6         68           2
 E glutamate           6.2         92           3
 F phenylalanine       4.0         60           2
 G glycine             4.7         70           3
 H histidine           2.3         35           2
 I isoleucine          5.4         80           2
 K lysine              4.8         71           2
 L leucine            11.2        168           3
 M methionine          2.5         37           1
 N asparagine          4.4         65           2
 P proline             7.4        110           4
 Q glutamine           4.5         67           2
 R arginine            5.2         77           2
 S serine              9.6        144           3
 T threonine           5.5         82           2
 V valine              7.0        105           3
 W tryptophan          1.1         17           1
 Y tyrosine            2.1         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57148 
GARNL1                0.013   GTPase activating Rap/RanGAP domain-like 1 isoform 2...
GARNL1                0.013   GTPase activating Rap/RanGAP domain-like 1 isoform 1...
C20orf74              0.012   akt substrate AS250 
SRRM2                 0.005   splicing coactivator subunit SRm300 
GIGYF1                0.004   PERQ amino acid rich, with GYF domain 1 
ZC3H4                 0.004   zinc finger CCCH-type containing 4 
HIVEP3                0.004   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.004   human immunodeficiency virus type I enhancer bindin...
TTN                   0.003   titin isoform N2-A 
LOC100293485          0.003   PREDICTED: hypothetical protein 
PCLO                  0.003   piccolo isoform 2 
PCLO                  0.003   piccolo isoform 1 
SRRM1                 0.003   serine/arginine repetitive matrix 1 
ZBTB4                 0.003   zinc finger and BTB domain containing 4 
ZBTB4                 0.003   zinc finger and BTB domain containing 4 
IQSEC2                0.003   IQ motif and Sec7 domain 2 isoform1 
RAD54L2               0.003   RAD54-like 2 
APC2                  0.003   adenomatosis polyposis coli 2 
KSR1                  0.003   kinase suppressor of ras 
AFF1                  0.003   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
FAM83B                0.003   hypothetical protein LOC222584 
LOC100132635          0.003   PREDICTED: similar to mucin 5, partial 
MUC2                  0.003   mucin 2 precursor 
STARD9                0.003   PREDICTED: StAR-related lipid transfer (START) doma...
LOC100133756          0.003   PREDICTED: hypothetical protein, partial 
STARD9                0.003   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.003   PREDICTED: StAR-related lipid transfer (START) doma...
OPHN1                 0.003   oligophrenin 1 
MUC17                 0.003   mucin 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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