Guide to the Human Genome
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Name: UTP15 Sequence: fasta or formatted (518aa) NCBI GI: 50980309
Description:

UTP15, U3 small nucleolar ribonucleoprotein, homolog

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         30           2
 C cysteine            1.2          6           1
 D aspartate           6.0         31           2
 E glutamate           5.4         28           1
 F phenylalanine       3.9         20           1
 G glycine             6.2         32           2
 H histidine           3.1         16           2
 I isoleucine          6.2         32           3
 K lysine              7.9         41           2
 L leucine            10.0         52           3
 M methionine          1.7          9           2
 N asparagine          2.9         15           2
 P proline             4.2         22           2
 Q glutamine           3.1         16           1
 R arginine            6.0         31           4
 S serine              7.9         41           3
 T threonine           6.0         31           2
 V valine              7.7         40           2
 W tryptophan          0.6          3           1
 Y tyrosine            4.2         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   UTP15, U3 small nucleolar ribonucleoprotein, homolog... 
WDR51A                0.083   WD repeat domain 51A isoform 2 
WDR51A                0.083   WD repeat domain 51A isoform 1 
WDR51A                0.079   WD repeat domain 51A isoform 3 
WDR5                  0.077   WD repeat domain 5 
WDR5                  0.077   WD repeat domain 5 
SNRNP40               0.073   WD repeat domain 57 (U5 snRNP specific) 
WDR5B                 0.072   WD repeat domain 5B 
WDR51B                0.070   WD repeat domain 51B 
TAF5                  0.064   TBP-associated factor 5 
WDR69                 0.063   WD repeat domain 69 
COPB2                 0.062   coatomer protein complex, subunit beta 2 (beta prime)...
GNB1                  0.059   guanine nucleotide-binding protein, beta-1 subunit [...
WDR38                 0.059   WD repeat domain 38 
TAF5L                 0.059   PCAF associated factor 65 beta isoform a 
GNB2L1                0.056   guanine nucleotide binding protein (G protein), beta ...
GNB2                  0.056   guanine nucleotide-binding protein, beta-2 subunit [...
KATNB1                0.054   katanin p80 subunit B 1 
WDR88                 0.054   PQQ repeat and WD repeat domain containing 
GNB4                  0.053   guanine nucleotide-binding protein, beta-4 subunit [...
PAFAH1B1              0.050   platelet-activating factor acetylhydrolase, isoform I...
WDR86                 0.049   WD repeat domain 86 
FBXW7                 0.048   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.048   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.048   F-box and WD repeat domain containing 7 isoform 2 [H...
GNB3                  0.048   guanine nucleotide-binding protein, beta-3 subunit [H...
SMU1                  0.045   smu-1 suppressor of mec-8 and unc-52 homolog 
EIF3I                 0.044   eukaryotic translation initiation factor 3, subunit 2...
PLRG1                 0.044   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
GNB5                  0.043   guanine nucleotide-binding protein, beta-5 subunit is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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