Guide to the Human Genome
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Name: LOC100128069 Sequence: fasta or formatted (420aa) NCBI GI: 239750113
Description:

PREDICTED: similar to Actin, alpha 1, skeletal muscle

Not currently referenced in the text

Other entries for this name:
alt prot {132aa} PREDICTED: similar to actin
alt prot {369aa} PREDICTED: similar to alpha actin
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9         12           1
 C cysteine            2.9         12           2
 D aspartate           4.5         19           1
 E glutamate           6.7         28           3
 F phenylalanine       5.0         21           2
 G glycine             9.8         41           2
 H histidine           2.1          9           2
 I isoleucine          5.2         22           2
 K lysine              6.2         26           2
 L leucine             8.3         35           2
 M methionine          4.0         17           1
 N asparagine          2.4         10           1
 P proline             5.5         23           1
 Q glutamine           5.2         22           2
 R arginine            2.4         10           1
 S serine              7.6         32           2
 T threonine           6.2         26           3
 V valine              7.4         31           1
 W tryptophan          1.4          6           1
 X unknown             0.2          1           1
 Y tyrosine            4.0         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Actin, alpha 1, skeletal musc... 
LOC100128069          0.828   PREDICTED: similar to alpha actin 
ACTA2                 0.412   alpha 2 actin 
ACTA2                 0.412   alpha 2 actin 
ACTA1                 0.407   actin, alpha 1, skeletal muscle 
ACTG2                 0.407   actin, gamma 2 propeptide 
ACTC1                 0.406   cardiac muscle alpha actin 1 proprotein 
ACTB                  0.402   beta actin 
ACTG1                 0.401   actin, gamma 1 propeptide 
ACTBL2                0.389   actin, beta-like 2 
ACTBL3                0.386   PREDICTED: actin, beta-like 3 
ACTBL3                0.386   PREDICTED: kappa-actin 
ACTBL3                0.382   PREDICTED: actin, beta-like 3 
LOC653269             0.382   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.382   PREDICTED: similar to protein expressed in prostate,...
LOC653781             0.376   PREDICTED: similar to protein expressed in prostate...
POTEF                 0.376   prostate, ovary, testis expressed protein on chromo...
POTEE                 0.374   protein expressed in prostate, ovary, testis, and p...
LOC100128069          0.297   PREDICTED: similar to actin 
ACTRT2                0.279   actin-related protein M2 
ACTR1B                0.278   ARP1 actin-related protein 1 homolog B, centractin b...
ACTRT1                0.275   actin-related protein T1 
ARPM1                 0.270   actin related protein M1 
ACTR1A                0.269   ARP1 actin-related protein 1 homolog A, centractin al...
ACTL7A                0.237   actin-like 7A 
ACTL9                 0.222   actin-like 9 
ACTR2                 0.218   actin-related protein 2 isoform b 
ACTL7B                0.215   actin-like 7B 
ACTR2                 0.211   actin-related protein 2 isoform a 
ACTR3B                0.158   actin-related protein 3-beta isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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