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Search of human proteins with 4759304
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759304 variable charge, Y-linked [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|49355828 variable charge, Y-linked 1B [Homo sapiens] 254 2e-68
gi|4759304 variable charge, Y-linked [Homo sapiens] 254 2e-68
gi|149999615 variable charge, X-linked 3B [Homo sapiens] 223 4e-59
gi|48762947 variable charge, X-linked 3A [Homo sapiens] 220 2e-58
gi|66932943 variable charge, X chromosome [Homo sapiens] 217 2e-57
gi|49619239 variable charge, X-linked 2 [Homo sapiens] 217 2e-57
gi|163965366 nascent polypeptide-associated complex alpha subuni... 45 2e-05
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 44 3e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 44 4e-05
gi|18641360 collectin sub-family member 12 [Homo sapiens] 43 5e-05
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 43 5e-05
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 43 5e-05
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 42 9e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 42 1e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 42 1e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 42 2e-04
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 41 2e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 41 3e-04
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 41 3e-04
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 41 3e-04
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 41 3e-04
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 40 4e-04
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 40 4e-04
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 40 6e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 8e-04
gi|150170670 piccolo isoform 2 [Homo sapiens] 39 8e-04
gi|150378539 piccolo isoform 1 [Homo sapiens] 39 8e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 39 0.001
gi|30795231 brain abundant, membrane attached signal protein 1 [... 39 0.001
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 39 0.001
>gi|49355828 variable charge, Y-linked 1B [Homo sapiens]
Length = 125
Score = 254 bits (648), Expect = 2e-68
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA
Sbjct: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
Query: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPS 120
AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPS
Sbjct: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPS 120
Query: 121 TPLSP 125
TPLSP
Sbjct: 121 TPLSP 125
>gi|4759304 variable charge, Y-linked [Homo sapiens]
Length = 125
Score = 254 bits (648), Expect = 2e-68
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA
Sbjct: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
Query: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPS 120
AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPS
Sbjct: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPS 120
Query: 121 TPLSP 125
TPLSP
Sbjct: 121 TPLSP 125
>gi|149999615 variable charge, X-linked 3B [Homo sapiens]
Length = 216
Score = 223 bits (567), Expect = 4e-59
Identities = 110/116 (94%), Positives = 113/116 (97%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
MSPKPRASGPPAKAKE GKRKSSSQPSPS PKKKTTKVA+KG+AVR GRRGKKGAATKMA
Sbjct: 1 MSPKPRASGPPAKAKEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA 60
Query: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSK 116
AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLS+
Sbjct: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQ 116
Score = 37.7 bits (86), Expect = 0.002
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 68 ESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ-HDPLSQESELEEPLS-KGRPSTPLS 124
ES P + +E E EEP+S+ +Q +PLSQESE+EEPLS + + PLS
Sbjct: 137 ESEVEEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEMEEPLSQESQVEEPLS 195
Score = 37.4 bits (85), Expect = 0.003
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 68 ESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ-HDPLSQESELEEPLSK 116
ES P + +E E EEP+S+ +Q +PLSQESE+EEPLS+
Sbjct: 157 ESEVEEPLSQESQVEEPLSQESEMEEPLSQESQVEEPLSQESEMEEPLSQ 206
Score = 30.8 bits (68), Expect = 0.28
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 68 ESGPAAPGPSDQPSQELPQHELPPEEPVS-EGTQHDPLSQESELEE 112
ES P + +E E EEP+S E +PLSQESE+EE
Sbjct: 167 ESQVEEPLSQESEMEEPLSQESQVEEPLSQESEMEEPLSQESEMEE 212
>gi|48762947 variable charge, X-linked 3A [Homo sapiens]
Length = 186
Score = 220 bits (561), Expect = 2e-58
Identities = 109/116 (93%), Positives = 112/116 (96%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
MSPKPRASGPPAKA E GKRKSSSQPSPS PKKKTTKVA+KG+AVR GRRGKKGAATKMA
Sbjct: 1 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA 60
Query: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSK 116
AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLS+
Sbjct: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQ 116
Score = 31.2 bits (69), Expect = 0.21
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 68 ESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ-HDPLSQESELEE 112
ES P + +E E EEP+S+ +Q +PLSQESE+EE
Sbjct: 137 ESEVEEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEMEE 182
>gi|66932943 variable charge, X chromosome [Homo sapiens]
Length = 206
Score = 217 bits (552), Expect = 2e-57
Identities = 107/116 (92%), Positives = 111/116 (95%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
MSPKPRASGPPAKA E GKRKSSSQPSPS PKKKTTKVA+KG+AVR GRRGKKGAATKMA
Sbjct: 1 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA 60
Query: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSK 116
AVTAPEAES PAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQE+ELEEPLS+
Sbjct: 61 AVTAPEAESAPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQEAELEEPLSQ 116
Score = 37.4 bits (85), Expect = 0.003
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 68 ESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ-HDPLSQESELEEPLSK 116
ES P + +E E EEP+S+ +Q +PLSQESE+EEPLS+
Sbjct: 137 ESEVEEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEMEEPLSQ 186
Score = 32.3 bits (72), Expect = 0.095
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 68 ESGPAAPGPSDQPSQELPQHELPPEEPVS-EGTQHDPLSQESELEEPLSK 116
ES P + +E E EEP+S E +PLSQES++EEP S+
Sbjct: 147 ESQVEEPLSQESEVEEPLSQESQVEEPLSQESEMEEPLSQESQVEEPPSQ 196
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 68 ESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ-HDPLSQESELEE 112
ES P + +E E EEP+S+ +Q +P SQESE+EE
Sbjct: 157 ESEVEEPLSQESQVEEPLSQESEMEEPLSQESQVEEPPSQESEMEE 202
>gi|49619239 variable charge, X-linked 2 [Homo sapiens]
Length = 139
Score = 217 bits (552), Expect = 2e-57
Identities = 107/116 (92%), Positives = 111/116 (95%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
MSPKPRASGPPAKA E GKRKSSSQPSPS PKKKTTKVA+KG+AVR GRRGKKGAATKMA
Sbjct: 1 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA 60
Query: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSK 116
AVTAPEAES PAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESE+EEPLS+
Sbjct: 61 AVTAPEAESAPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESEVEEPLSQ 116
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 44.7 bits (104), Expect = 2e-05
Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 21/135 (15%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRR--GKKGAATKM 59
SP P+ + P A + + PSP K T A + +GG KGA T
Sbjct: 933 SPSPKGAPTPPAATPPSPKGGPATPSP---KWAPTPPAATPPSPKGGPATPSPKGAPTPP 989
Query: 60 AAVTAPEAESGPAAPGPSDQPSQELPQHELPPE-------EPVSEGTQHDPLS-----QE 107
AA T P + GPA P P P+ P PP P +G P + +
Sbjct: 990 AA-TPPSPKGGPATPSPKGAPT---PPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKG 1045
Query: 108 SELEEPLSKGRPSTP 122
S PL KG P+TP
Sbjct: 1046 SPAATPLPKGAPTTP 1060
Score = 43.5 bits (101), Expect = 4e-05
Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Query: 2 SPKPR-ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRR--GKKGAATK 58
+P P+ AS PPA + K ++ P P G T A + +GG KGA T
Sbjct: 1026 TPFPKGASTPPAATPPSPKGSPAATPLPKGAP---TTPAATLPSPKGGPATPSLKGAPTP 1082
Query: 59 MAAVTAPEAESGPAAPGPSDQP-----SQELPQHEL--PPEEPVSEGTQHDPLSQESELE 111
AA T P + GPA P P P + P+ L PP + P S + L
Sbjct: 1083 PAA-TPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLA 1141
Query: 112 EPLSKGRPSTP 122
P KG P+TP
Sbjct: 1142 TPPPKGAPTTP 1152
Score = 41.2 bits (95), Expect = 2e-04
Identities = 43/136 (31%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSG------PKKKTTKVAEKGEAVRGGRRGK--K 53
SPK + PP K T +++ PSP G PK T A + +GG K
Sbjct: 1112 SPKGGLATPPHKGAPT--TPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPK 1169
Query: 54 GAATKMAAVTAPEAESGPAAPGPSDQPSQEL-----PQHELPPEEPVSEGT--QHDPLSQ 106
GA T AA T P + G A P P P+ P+ L P T P S
Sbjct: 1170 GAPTTPAA-TPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP 1228
Query: 107 ESELEEPLSKGRPSTP 122
+ L P KG P+TP
Sbjct: 1229 KGGLATPSPKGAPTTP 1244
Score = 41.2 bits (95), Expect = 2e-04
Identities = 45/143 (31%), Positives = 57/143 (39%), Gaps = 22/143 (15%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSG------PKKKTTKVAEKGEAVRGGRR--GKK 53
SPK + PP K T +++ PSP G PK T A + +GG K
Sbjct: 1158 SPKGGLATPPPKGAPT--TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPK 1215
Query: 54 GAATKMAAVTAPEAESGPAAPGPSDQPSQEL---PQHELPPEEPVSEGTQHDPL----SQ 106
GA T AA T P + G A P P P+ P + P P +G P S
Sbjct: 1216 GAPTTPAA-TPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSL 1274
Query: 107 ESELEEPLSKGRPS----TPLSP 125
+ L P KG P+ TP SP
Sbjct: 1275 KGGLATPPHKGAPNPAVVTPPSP 1297
Score = 39.3 bits (90), Expect = 8e-04
Identities = 40/129 (31%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSG------PKKKTTKVAEKGEAVRGGRR--GKK 53
SPK + P K T +++ PSP G PK T A + +GG K
Sbjct: 1181 SPKGGLATPSPKGAPT--TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPK 1238
Query: 54 GAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGT-QHDPLSQESELEE 112
GA T AA T P + GPA P P P+ P PP T H + +
Sbjct: 1239 GAPTTPAA-TPPSPKGGPATPPPKGAPT---PPAATPPSLKGGLATPPHKGAPNPAVVTP 1294
Query: 113 PLSKGRPST 121
P KG P+T
Sbjct: 1295 PSPKGGPAT 1303
Score = 37.4 bits (85), Expect = 0.003
Identities = 39/130 (30%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSG------PKKKTTKVAEKGEAVRGGRRGK--K 53
SPK + P K T +++ PSP G PK T A +++GG K
Sbjct: 1227 SPKGGLATPSPKGAPT--TPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHK 1284
Query: 54 GAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDP-LSQESELEE 112
GA A VT P + GPA P P+ P PP S GT +
Sbjct: 1285 GAPNP-AVVTPPSPKGGPATSPPKGAPT---PPAATPPSPKGSPGTPPPKGAPTPPAVTP 1340
Query: 113 PLSKGRPSTP 122
P KG P+ P
Sbjct: 1341 PSPKGTPTLP 1350
Score = 36.2 bits (82), Expect = 0.007
Identities = 33/143 (23%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA- 60
SPK PP K T + P + TT ++ G + G A +
Sbjct: 1319 SPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSH 1378
Query: 61 ----AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQH--------------- 101
A+T P + GPA P P P+ P + P + T+
Sbjct: 1379 KGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAV 1438
Query: 102 DPLSQESELEEPLSKGRPSTPLS 124
P+S + KG P+TP S
Sbjct: 1439 TPVSLKKAPATSAPKGGPATPSS 1461
Score = 35.4 bits (80), Expect = 0.011
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 10 PPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAES 69
PPA + K+ ++ GP ++K AV + A ++A ++P+
Sbjct: 1435 PPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPK--K 1492
Query: 70 GPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPST 121
PA P P P+ P E P + ++ DP++ + L LSK P+T
Sbjct: 1493 APATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATL---LSKKTPAT 1541
Score = 34.3 bits (77), Expect = 0.025
Identities = 39/131 (29%), Positives = 51/131 (38%), Gaps = 15/131 (11%)
Query: 2 SPKPR-ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGK--KGAATK 58
+P P+ A PPA + K ++ P P T A + +GG KGA T
Sbjct: 1096 TPSPKGAPMPPAATPPSPKGGLATPPHKGAP----TTPAATPPSPKGGLATPPPKGAPTT 1151
Query: 59 MAAVTAPEAESGPAAPGPSDQPSQEL-----PQHELPPEEPVSEGT--QHDPLSQESELE 111
AA T P + G A P P P+ P+ L P T P S + L
Sbjct: 1152 PAA-TPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLA 1210
Query: 112 EPLSKGRPSTP 122
P KG P+TP
Sbjct: 1211 TPSPKGAPTTP 1221
Score = 33.9 bits (76), Expect = 0.033
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 13/129 (10%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSG------PKKKTTKVAEKGEAVRGGRRGK--K 53
SPK + P K T +++ PSP G PK T A + +GG K
Sbjct: 1204 SPKGGLATPSPKGAPT--TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPK 1261
Query: 54 GAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEP 113
GA T AA T P + G A P P+ + P P + + P + P
Sbjct: 1262 GAPTPPAA-TPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAA--TPP 1318
Query: 114 LSKGRPSTP 122
KG P TP
Sbjct: 1319 SPKGSPGTP 1327
Score = 33.1 bits (74), Expect = 0.056
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
+PK + PP SS + SP+ P T K+ G KKG
Sbjct: 1632 APKGTPTSPPVTP-------SSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKEV 1684
Query: 62 VTAPEAESGPAAPGPSDQ-PSQELPQHELPP--EEPVSEGTQHDPLS 105
+ AP ES P P+ + P + PP +P ++ PLS
Sbjct: 1685 LVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPLS 1731
Score = 33.1 bits (74), Expect = 0.056
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 5 PRAS-GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
P+AS G PAK T ++ P+P T R G + KK +AT
Sbjct: 1666 PQASKGLPAKKGPTALKEVLVAPAPESTPIITAPT-------RKGPQTKKSSATSPPICP 1718
Query: 64 APEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTPL 123
P A++G P + P+ LP + + + H P + L P SK STPL
Sbjct: 1719 DPSAKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDASHSP---KGPLAPPESKA--STPL 1773
Query: 124 S 124
+
Sbjct: 1774 T 1774
Score = 31.6 bits (70), Expect = 0.16
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 22 SSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESGPAAPGPSDQPS 81
++ P+P PK T A + +G K T + V P + GPA P P P+
Sbjct: 852 TTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTP-SVVNLPFPKEGPATPAPKQAPA 910
Query: 82 QEL-----------PQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
+ P + P P +G P + P KG P+TP
Sbjct: 911 LSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAA-----TPPSPKGGPATP 957
Score = 29.6 bits (65), Expect = 0.62
Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 15/123 (12%)
Query: 3 PKPRASGPPAKAKETGKRKSSSQPSPSG-PKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
P P+ + K +++ PSP G P K A AV KG T A
Sbjct: 1295 PSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPP--SPKGTPTLPA- 1351
Query: 62 VTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSE--GTQHDPLSQESELEEPLSKGRP 119
T P ++ GP P + P+ PP S G P S + P KG P
Sbjct: 1352 -TTPSSKGGPTTPSSKEGPT--------PPAATPSHKGGPAMTPPSPKRGPAIPSPKGDP 1402
Query: 120 STP 122
++P
Sbjct: 1403 TSP 1405
Score = 29.6 bits (65), Expect = 0.62
Identities = 30/98 (30%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 2 SPKPRASGP-PAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGG--RRGKKGAATK 58
SPK + P P +A T K +S P P + K + K A T
Sbjct: 1557 SPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTP 1616
Query: 59 MAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVS 96
AVT P E GPA P P P+ PP P S
Sbjct: 1617 -PAVTPPSPEKGPATPAPKGTPTS-------PPVTPSS 1646
Score = 25.8 bits (55), Expect = 8.9
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 54 GAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQES 108
G+ + V+ P A S P SQ+ PP+ P+S G+ PL Q S
Sbjct: 262 GSLSLKGPVSPPAALSLSTQSLPVVTSSQKTAGPNTPPDFPISLGSHLAPLHQSS 316
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 43.9 bits (102), Expect = 3e-05
Identities = 38/122 (31%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
SP+P G K T K K + PK+K K +K + + + KK + K
Sbjct: 113 SPRPPKKGKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPKE-KPPKATKKPPSGKRPP 171
Query: 62 VTAP-EAESGPAAPGPSDQPSQELPQH---------ELPPEEPVSEGTQHDPLSQESELE 111
+ AP E P P PS P +ELPQ + P EE E +H P E E E
Sbjct: 172 ILAPSETLEWPLPPPPSPGP-EELPQEGGAPLSNNWQNPGEETHVEAREHQP-EPEEETE 229
Query: 112 EP 113
+P
Sbjct: 230 QP 231
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 43.5 bits (101), Expect = 4e-05
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP G+ + P P GP T E+G GR G G A AP +
Sbjct: 1269 GPPGDPGLPGR---TGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLK 1325
Query: 69 SGPAAPGPSDQPSQELPQHELPPEEPVSEG 98
P PGP P + P+ P EP + G
Sbjct: 1326 GSPGLPGPRGDPGERGPRG--PKGEPGAPG 1353
Score = 39.3 bits (90), Expect = 8e-04
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 5 PRASGPPA---KAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
P SGPP K E GK + + G + + EKG++ GR G+ G + A
Sbjct: 1820 PGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGA 1879
Query: 62 VTAPEAESGPAAPGPSDQPSQELP 85
+ P PGP P Q P
Sbjct: 1880 PGILGPQGPPGLPGPVGPPGQGFP 1903
Score = 38.5 bits (88), Expect = 0.001
Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRG--GRRGKKGAATKMAA--V 62
ASG G S P P GPK + G+AV G G +G+KGA +A V
Sbjct: 2264 ASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLV 2323
Query: 63 TAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDP----LSQESELEEPLSKGR 118
P A+ PGP + + E P +P +G + P + + P S G
Sbjct: 2324 GEPGAKGDRGLPGPRGEKGEAGRAGE--PGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGP 2381
Query: 119 PSTP 122
P P
Sbjct: 2382 PGPP 2385
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 13/124 (10%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAV---------RGGRRGKKGA 55
P SGPP + + G+ P P GP+ + +V EKG+ + G RG +GA
Sbjct: 1606 PGDSGPPGEKGDPGR---PGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGA 1662
Query: 56 ATKMAAVTAPEAESGPAAPGPSDQPSQELPQHEL-PPEEPVSEGTQHDPLSQESELEEPL 114
V + P G + P P+ + P P G D E EP
Sbjct: 1663 PGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPG 1722
Query: 115 SKGR 118
+G+
Sbjct: 1723 DRGQ 1726
Score = 36.2 bits (82), Expect = 0.007
Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
Query: 9 GPPAKAKETGKRKSSSQP---SPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAP 65
GPP A G + +P P GP T + EKGE R G G A +A
Sbjct: 1498 GPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPA--VAGPKGE 1555
Query: 66 EAESGPAAP-GPSDQPSQELPQHELPPEEPVSEGTQHD--PLSQESELEEPLSKGRPSTP 122
+ + GPA P G + + P + P +P +G D P+ P G P
Sbjct: 1556 KGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEK 1615
Query: 123 LSP 125
P
Sbjct: 1616 GDP 1618
Score = 36.2 bits (82), Expect = 0.007
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GP A E GK P +G + + E+GE G RG++G + P
Sbjct: 2028 GPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQG---RDGPPGLPGTP 2084
Query: 69 SGPAAPGPS---DQPSQELPQHELPP------EEPVSEGTQ 100
P PGP D+P L + PP EP S G Q
Sbjct: 2085 GPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQ 2125
Score = 33.1 bits (74), Expect = 0.056
Identities = 24/88 (27%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
+P +GPP + TG + P P GP G + G GK GA + A
Sbjct: 2208 EPGETGPPGRGL-TGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASG 2266
Query: 64 APEAESGPAAPGPSDQPSQELPQHELPP 91
P PG P P+ E P
Sbjct: 2267 KDGDRGSPGVPGSPGLPGPVGPKGEPGP 2294
Score = 32.3 bits (72), Expect = 0.095
Identities = 32/118 (27%), Positives = 39/118 (33%), Gaps = 17/118 (14%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G P + G R P P GP A KG+ G RG G A
Sbjct: 1364 PGRKGDPGPSGPPGPRGPLGDPGPRGPPG-LPGTAMKGDKGDRGERGPPGPGEGGIAPGE 1422
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P P +PGP P P +G + D SE P G+P +P
Sbjct: 1423 PGLPGLPGSPGPQG-----------PVGPPGKKGEKGD-----SEDGAPGLPGQPGSP 1464
Score = 30.4 bits (67), Expect = 0.36
Identities = 22/74 (29%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPE 66
A G P + G++ P GPK GEA G RG G A P
Sbjct: 1454 APGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRG---LPG 1510
Query: 67 AESGPAAPGPSDQP 80
P A GP P
Sbjct: 1511 VAGRPGAKGPEGPP 1524
Score = 30.0 bits (66), Expect = 0.47
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKT------TKVAEKGEAVRGGRRGKKGAATKMAAV 62
GP + E G R +P GP+ T + EKG+ G +G KG + +
Sbjct: 2469 GPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGP 2528
Query: 63 TAPEAESGPAAP-GPSDQPSQELPQHELPPEEPVSEGTQHDP 103
P G GP + P+ + +P +G++ +P
Sbjct: 2529 PGPRGAKGDMGERGPRGLDGDKGPRGD--NGDPGDKGSKGEP 2568
Score = 29.6 bits (65), Expect = 0.62
Identities = 19/79 (24%), Positives = 27/79 (34%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G P E G R P G + + E GE G G G+
Sbjct: 1455 PGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGR 1514
Query: 65 PEAESGPAAPGPSDQPSQE 83
P A+ PGP+ + ++
Sbjct: 1515 PGAKGPEGPPGPTGRQGEK 1533
Score = 29.6 bits (65), Expect = 0.62
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP +G PSGP K + G G RG++G + P
Sbjct: 1773 GPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQG-------LPGPSGP 1825
Query: 69 SG-PAAPGPSDQPSQELPQHELPPEEPVSEG 98
G P PG +P E P +P +G
Sbjct: 1826 PGLPGKPGEDGKPGLNGKNGE--PGDPGEDG 1854
Score = 29.3 bits (64), Expect = 0.81
Identities = 29/102 (28%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAV--TAPE 66
G P E G P P G EKG+ G G+ G K A + P
Sbjct: 1737 GLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPN 1796
Query: 67 AESGPAA-PG----PSDQPSQELPQHELPPEEPVSEGTQHDP 103
+G A PG P + Q LP PP P G P
Sbjct: 1797 GAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKP 1838
Score = 28.9 bits (63), Expect = 1.1
Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 4 KPRASGPPAK-------AKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAA 56
+P GPP + A+E G+ Q P GPK GE G RG G
Sbjct: 1698 EPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQ 1757
Query: 57 TKMAAVTAPEAESGPAAP 74
V P E G P
Sbjct: 1758 GD-PGVRGPAGEKGDRGP 1774
Score = 28.9 bits (63), Expect = 1.1
Identities = 30/119 (25%), Positives = 39/119 (32%), Gaps = 8/119 (6%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
G P A G+ P SG K + KG+ G+ G KG + P
Sbjct: 2650 GRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIG 2709
Query: 69 SGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSK--GRPSTPLSP 125
P G P + P P EG Q Q+ E P + G P P +P
Sbjct: 2710 GFPGPSGNDGSAGPPGPPGSVGPRGP--EGLQ----GQKGERGPPGERVVGAPGVPGAP 2762
Score = 28.5 bits (62), Expect = 1.4
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 3 PKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRG 47
P R G P G+R +P P+GP+ + + A + +RG
Sbjct: 2748 PGERVVGAPGVPGAPGERGEQGRPGPAGPRGEKGEAALTEDDIRG 2792
Score = 27.7 bits (60), Expect = 2.3
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAA--TKMAAV 62
P G P K G R GP+ + KG G +G KG A +
Sbjct: 2595 PGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGL 2654
Query: 63 TAPEAESG-PAAPGPSDQPSQE 83
+ E G P PG S P +E
Sbjct: 2655 AGHKGEMGEPGVPGQSGAPGKE 2676
Score = 27.3 bits (59), Expect = 3.1
Identities = 25/98 (25%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKM---AAVTAP 65
GPP + G R + + GP + G+ G G GAA K P
Sbjct: 1752 GPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLP 1811
Query: 66 EAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDP 103
PGPS P LP +P G +P
Sbjct: 1812 GLRGEQGLPGPSGPPG--LPGKPGEDGKPGLNGKNGEP 1847
Score = 26.9 bits (58), Expect = 4.0
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
G P + G R +GP + EKG+ R G G G + V E
Sbjct: 1583 GDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDE 1642
Query: 69 SGPAAPGPSDQPSQELPQHELPPEEPVSE-GTQHDP 103
P PG + + + PV E G Q DP
Sbjct: 1643 GPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDP 1678
Score = 26.9 bits (58), Expect = 4.0
Identities = 27/106 (25%), Positives = 32/106 (30%), Gaps = 8/106 (7%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P SG P K G + GPK + E+G GG G G A
Sbjct: 2667 PGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSG-NDGSAGPPG 2725
Query: 65 PEAESGPAAP-------GPSDQPSQELPQHELPPEEPVSEGTQHDP 103
P GP P G P + + P P G Q P
Sbjct: 2726 PPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRP 2771
Score = 26.2 bits (56), Expect = 6.8
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA--V 62
P A G +TG R QP PSG + +G G G G+ A +
Sbjct: 2397 PGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGL 2456
Query: 63 TAPEAESGPAAPGP 76
+ + G PGP
Sbjct: 2457 KGDKGDPGVGLPGP 2470
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 43.1 bits (100), Expect = 5e-05
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAP- 65
+ GPP G++ +P P GP + + G G +G KG+ + +P
Sbjct: 456 SQGPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPPGERGGKGSKGSQGPKGSRGSPG 515
Query: 66 -EAESGPAA-PGPSDQPSQE-LPQHELPPEEPVSEGTQHDP 103
GP+ PGP P +E LP + PP +GT +P
Sbjct: 516 KPGPQGPSGDPGPPGPPGKEGLPGPQGPPGFQGLQGTVGEP 556
Score = 28.5 bits (62), Expect = 1.4
Identities = 25/91 (27%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 2 SPKPRAS-GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
S P+ S G P K G + S P P GP K +G G +G G
Sbjct: 504 SQGPKGSRGSPGKP---GPQGPSGDPGPPGPPGKEGLPGPQGPPGFQGLQGTVGEPGVPG 560
Query: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPP 91
P P PGP P P + P
Sbjct: 561 PRGLPGLPGVPGMPGPKGPPGPPGPSGAVVP 591
Score = 28.1 bits (61), Expect = 1.8
Identities = 25/102 (24%), Positives = 30/102 (29%), Gaps = 2/102 (1%)
Query: 18 GKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESGPAAPGPS 77
G R S +P P GP G+ G +G G V P PG
Sbjct: 509 GSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGPPGFQGLQGTVGEPGVPGPRGLPGLP 568
Query: 78 DQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRP 119
P +P + PP P G Q P G P
Sbjct: 569 GVPG--MPGPKGPPGPPGPSGAVVPLALQNEPTPAPEDNGCP 608
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 43.1 bits (100), Expect = 5e-05
Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 11/123 (8%)
Query: 3 PKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKV--------AEKGEAVRGGR-RGKK 53
P +SG E G +P P+GP + T V E R + R ++
Sbjct: 859 PSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCRERE 918
Query: 54 GAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ--HDPLSQESELE 111
T + A A GPAAP PS P + P LP EP S Q PL+ ++
Sbjct: 919 PLQTALLAFGVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQ 978
Query: 112 EPL 114
P+
Sbjct: 979 PPV 981
Score = 32.0 bits (71), Expect = 0.12
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 15/137 (10%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSP-------SGPKKKTTKVAEKGEAVRGGRRGKK 53
++P P P +++ R+ P P SGP + + E G ++
Sbjct: 763 VTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRR 822
Query: 54 GAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESEL--- 110
++ A + P PA P + + P+ P EG P ++E L
Sbjct: 823 RTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEGL---PFAEEGNLTIK 879
Query: 111 EEPLSKGRP--STPLSP 125
+ P G P TP+ P
Sbjct: 880 QRPKPAGPPPRETPVPP 896
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 43.1 bits (100), Expect = 5e-05
Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 11/123 (8%)
Query: 3 PKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKV--------AEKGEAVRGGR-RGKK 53
P +SG E G +P P+GP + T V E R + R ++
Sbjct: 941 PSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCRERE 1000
Query: 54 GAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ--HDPLSQESELE 111
T + A A GPAAP PS P + P LP EP S Q PL+ ++
Sbjct: 1001 PLQTALLAFGVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQ 1060
Query: 112 EPL 114
P+
Sbjct: 1061 PPV 1063
Score = 32.0 bits (71), Expect = 0.12
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 15/137 (10%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSP-------SGPKKKTTKVAEKGEAVRGGRRGKK 53
++P P P +++ R+ P P SGP + + E G ++
Sbjct: 845 VTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRR 904
Query: 54 GAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESEL--- 110
++ A + P PA P + + P+ P EG P ++E L
Sbjct: 905 RTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEGL---PFAEEGNLTIK 961
Query: 111 EEPLSKGRP--STPLSP 125
+ P G P TP+ P
Sbjct: 962 QRPKPAGPPPRETPVPP 978
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 42.4 bits (98), Expect = 9e-05
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
SP + P KAK K ++ S P+K T + EA + + A K
Sbjct: 724 SPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPE 783
Query: 62 VTAPEAESGPAAPGPSDQPSQE---LPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGR 118
+ +P + P +E P+ E+P +E V + + QE +++EP K
Sbjct: 784 KAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAE 843
Query: 119 ----PSTP 122
P+TP
Sbjct: 844 EEKAPATP 851
Score = 38.5 bits (88), Expect = 0.001
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
SP + PA+AK K ++ S P+K + E+ ++ + +K A A
Sbjct: 518 SPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKEEAKSPAE 577
Query: 62 VTAPEAESGPA---APGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGR 118
V +PE PA A P++ S E + + EE S P+ +E+ + P
Sbjct: 578 VKSPEKAKSPAKEEAKSPAEAKSPEKAKSPV-KEEAKSPAEAKSPVKEEA--KSPAEVKS 634
Query: 119 PSTPLSP 125
P SP
Sbjct: 635 PEKAKSP 641
Score = 33.1 bits (74), Expect = 0.056
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 11 PAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESG 70
P KAK K ++ S P+K + V E+ ++ + K A A V +PE
Sbjct: 581 PEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKS 640
Query: 71 PA-----APGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTPL 123
P +P + P +E + + PV + ++ E S + +P+
Sbjct: 641 PTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPV 698
Score = 31.6 bits (70), Expect = 0.16
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 9 GPPAKAKETGKRKSSSQPSP---SGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAP 65
G + E G+ ++ S P+ S K+ + V E+ ++ + +K A A V +P
Sbjct: 488 GGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSP 547
Query: 66 EAESGPAAPGPSDQPSQELPQHE--LPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTPL 123
E PA P + P+ E P E S P +E+ + P P
Sbjct: 548 EKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEA--KSPAEAKSPEKAK 605
Query: 124 SP 125
SP
Sbjct: 606 SP 607
Score = 30.4 bits (67), Expect = 0.36
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
KP+ S AK +E +K P P K +V E + KK A
Sbjct: 884 KPKESKVEAKKEEAEDKKKVPTPEKEAPAK--VEVKEDAKPKEKTEVAKKEPDDAKAKEP 941
Query: 64 APEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
+ AE AAP D ++ + P E+P +E ++ E ++ LSK PS P
Sbjct: 942 SKPAEKKEAAPEKKDTKEEKAKK---PEEKPKTE-------AKAKEDDKTLSK-EPSKP 989
Score = 30.0 bits (66), Expect = 0.47
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
SP + PA+AK K ++ S P+K + E+ ++ + +K A
Sbjct: 606 SPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEK 665
Query: 62 VTAP---EAESGPAAPGPSDQPSQELPQHELP-PEEPVSEGTQHDPLSQESELEE 112
+P EA+S A P ++ + + P EE S P+ +E++ E
Sbjct: 666 AKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPE 720
Score = 25.8 bits (55), Expect = 8.9
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
SP+ + P KAK K ++ S P K K EK + + + + K +
Sbjct: 654 SPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEK---AKSPVKEEAKSPEKAKS 710
Query: 62 VTAPEAESGPAAPGPSDQPSQELPQHELPPEE 93
EA+S A P + ++ + + P +E
Sbjct: 711 PVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKE 742
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 42.0 bits (97), Expect = 1e-04
Identities = 36/131 (27%), Positives = 47/131 (35%), Gaps = 18/131 (13%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGE---------AVRGGRRGKKGA 55
P SG P K G P P GP T E G R G G KG
Sbjct: 998 PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGD 1057
Query: 56 ATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPV-------SEGTQ--HDPLSQ 106
+ AV AP A P +PGP+ ++ + E + P+ + G Q P
Sbjct: 1058 RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGD 1117
Query: 107 ESELEEPLSKG 117
+ E EP +G
Sbjct: 1118 KGEAGEPGERG 1128
Score = 37.0 bits (84), Expect = 0.004
Identities = 24/82 (29%), Positives = 29/82 (35%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P A+G P A G S+ P P GP + K KG G G+ G
Sbjct: 893 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGP 952
Query: 65 PEAESGPAAPGPSDQPSQELPQ 86
P + P GPS PQ
Sbjct: 953 PGEKGEPGDDGPSGAEGPPGPQ 974
Score = 35.8 bits (81), Expect = 0.009
Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 3/117 (2%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP A G R + + +GP G + G +G++G A + AP +
Sbjct: 807 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 866
Query: 69 SGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTPLSP 125
APGP P+ + P G P + P S G P P P
Sbjct: 867 GPSGAPGPQGPTGVTGPKGARGAQGP--PGATGFP-GAAGRVGPPGSNGNPGPPGPP 920
Score = 35.0 bits (79), Expect = 0.015
Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 28/128 (21%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPK------------------KKTTKVAEKG 42
++ +P +GP K +G +P P GP+ + K EKG
Sbjct: 562 LTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKG 621
Query: 43 EAVRGGRRGKKGAATKMAAVTAPEAESGPA-------APGPSDQPSQELPQHELPPEEPV 95
G RG G + A P +GPA APGPS Q LP PP E
Sbjct: 622 LPGAPGLRGLPGKDGETGA-AGPPGPAGPAGERGEQGAPGPSG--FQGLPGPPGPPGEGG 678
Query: 96 SEGTQHDP 103
G Q P
Sbjct: 679 KPGDQGVP 686
Score = 34.7 bits (78), Expect = 0.019
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 9 GPPAKAKETGKRKSSSQPS---PSGPKKKTTKVAEKGEAVRGGRRGKKGAATKM--AAVT 63
G P A E GKR + +P P GP + +G + G G KGA + + +
Sbjct: 480 GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA 539
Query: 64 APEAESG----------PAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEP 113
P+ +G P A G + +P PQ ++ P E + P + +P
Sbjct: 540 GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 599
Query: 114 LSKGRP 119
G P
Sbjct: 600 GVMGFP 605
Score = 34.3 bits (77), Expect = 0.025
Identities = 27/110 (24%), Positives = 37/110 (33%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+G A G + S P P GP T +G G G GAA ++ +
Sbjct: 854 AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGN 913
Query: 68 ESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKG 117
P PGPS + + + + P E P E EP G
Sbjct: 914 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDG 963
Score = 33.5 bits (75), Expect = 0.043
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 19/89 (21%)
Query: 1 MSPK--PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKV---------AEKGEAVRGGR 49
M P+ P G A G R + QP P+GP KGEA G
Sbjct: 323 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 382
Query: 50 RGKKGAATKMAAVTAPEAESG-PAAPGPS 77
RG +GA P E G P +PGP+
Sbjct: 383 RGPEGA-------QGPRGEPGTPGSPGPA 404
Score = 33.1 bits (74), Expect = 0.056
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPE 66
A+GPP A G+R P PSG + GE + G +G G A V P
Sbjct: 640 AAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV-GPR 698
Query: 67 AESGPAAPGPSDQPSQE 83
E G PG P +
Sbjct: 699 GERG--FPGERGSPGAQ 713
Score = 32.7 bits (73), Expect = 0.073
Identities = 22/93 (23%), Positives = 28/93 (30%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G P E G + GP+ + G A G G G + A
Sbjct: 365 PGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGA 424
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSE 97
P P PGP P + L P+ E
Sbjct: 425 PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGE 457
Score = 32.3 bits (72), Expect = 0.095
Identities = 31/122 (25%), Positives = 42/122 (34%), Gaps = 26/122 (21%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+G P E+G + P P GP+ + G A G RG G
Sbjct: 302 AGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDG------------- 348
Query: 68 ESGPAAP----GPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTPL 123
+ GPA P GP+ P P P ++G + P +G P TP
Sbjct: 349 QPGPAGPPGPVGPAGGPGF--------PGAPGAKG-EAGPTGARGPEGAQGPRGEPGTPG 399
Query: 124 SP 125
SP
Sbjct: 400 SP 401
Score = 31.6 bits (70), Expect = 0.16
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 20/95 (21%)
Query: 2 SPKPR-ASGPPAKAKETGKRKSSSQPS------------PSGPKKKTTKVAEKGEAVRGG 48
SP P ASG P G + S+ P P GP+ T + KG+ G
Sbjct: 400 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 459
Query: 49 RRGKKGAATKMAAVTAPEAESGPAAPGPSDQPSQE 83
G KG P+ E GPA P + P+ E
Sbjct: 460 IAGFKGE-------QGPKGEPGPAGPQGAPGPAGE 487
Score = 31.6 bits (70), Expect = 0.16
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 3 PKPR-ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
P P+ A+GP +TG+ + GPK + +G G GK+GA +
Sbjct: 440 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGG 499
Query: 62 V--TAPEAESGPAAPGPSDQPSQE 83
V P E G APG P Q+
Sbjct: 500 VGPIGPPGERG--APGNRGFPGQD 521
Score = 31.2 bits (69), Expect = 0.21
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GP + E G K P GP E+G G +G+KGA P
Sbjct: 101 GPKGQKGEPGDIKDIV--GPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTP 158
Query: 69 SGPAAPGPSDQP 80
P PGP P
Sbjct: 159 GNPGPPGPPGPP 170
Score = 31.2 bits (69), Expect = 0.21
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+GPP + E G S P GP+ ++G G+RG++G P
Sbjct: 950 AGPPGEKGEPGDDGPSGAEGPPGPQGLA---GQRGIVGLPGQRGERGFPGLPGPSGEPGK 1006
Query: 68 ESGPAAPGPSDQPSQELPQHEL-PPEEPVSEGT 99
+ P A G P P P EP EG+
Sbjct: 1007 QGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS 1039
Score = 31.2 bits (69), Expect = 0.21
Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 21/97 (21%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKV------------AEKGEAVRGGRRGK 52
P G P A TGK+ + GP + +KGEA G RG
Sbjct: 1070 PGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGL 1129
Query: 53 KG--AATKMAAVTAP------EAESGPAAP-GPSDQP 80
KG T + + P + SGPA P GP P
Sbjct: 1130 KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPP 1166
Score = 30.4 bits (67), Expect = 0.36
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 7 ASGPPAKAKETG---KRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
A+G P + E G R + +P +GP+ K GE R G G +GA + +
Sbjct: 544 ANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMG 603
Query: 64 APEAESGPAAPGPSDQ 79
P + PG + +
Sbjct: 604 FPGPKGANGEPGKAGE 619
Score = 30.4 bits (67), Expect = 0.36
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKM----- 59
P A GPP G+R ++ +GPK V EKG G+ G +G +
Sbjct: 740 PGAQGPPGLQGMPGERGAA---GIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGP 796
Query: 60 AAVTAPEAESGPAAPGPS 77
A + E GP PGP+
Sbjct: 797 AGANGEKGEVGP--PGPA 812
Score = 30.4 bits (67), Expect = 0.36
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 8/117 (6%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPE 66
A GPP G+R P G + G G GK+GA P
Sbjct: 967 AEGPPGPQGLAGQRGIVGLPGQRGER------GFPGLPGPSGEPGKQGAPGASGDRGPPG 1020
Query: 67 AESGPAAPGPSDQPSQE-LPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P GP+ +P +E P + PP + G + D + + P + G P +P
Sbjct: 1021 PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGD-RGETGAVGAPGAPGPPGSP 1076
Score = 29.6 bits (65), Expect = 0.62
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGR------RGKKGAATKMAAV 62
GPP +GK ++ P P GP + E G A G G G M+A
Sbjct: 1164 GPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAF 1223
Query: 63 TAPEAESGPAAPGP-------SDQPSQELPQHE 88
A GP GP +DQ + L QH+
Sbjct: 1224 ----AGLGPREKGPDPLQYMRADQAAGGLRQHD 1252
Score = 29.3 bits (64), Expect = 0.81
Identities = 20/76 (26%), Positives = 26/76 (34%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G E G+ S P GP K + GEA + G+ G++G A
Sbjct: 218 PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGF 277
Query: 65 PEAESGPAAPGPSDQP 80
P P G P
Sbjct: 278 PGTPGLPGVKGHRGYP 293
Score = 29.3 bits (64), Expect = 0.81
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
G P K G P P+G + +V G A G RG G + T P
Sbjct: 777 GAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGE----TGPPGP 832
Query: 69 SGPAAP-GPSDQPSQELPQHE 88
+G A P G QP + Q E
Sbjct: 833 AGFAGPPGADGQPGAKGEQGE 853
Score = 28.9 bits (63), Expect = 1.1
Identities = 19/77 (24%), Positives = 25/77 (32%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP E GK P +G E+G G G +G P +
Sbjct: 669 GPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTD 728
Query: 69 SGPAAPGPSDQPSQELP 85
A GP+ P + P
Sbjct: 729 GPKGASGPAGPPGAQGP 745
Score = 28.5 bits (62), Expect = 1.4
Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GP G + + P+G + +GE G G GA+
Sbjct: 356 PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGI 415
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEP 113
P A+ APG + P P PP + G PL + + EP
Sbjct: 416 PGAKGSAGAPGIAGAPG--FPGPRGPPGPQGATG----PLGPKGQTGEP 458
Score = 28.5 bits (62), Expect = 1.4
Identities = 36/123 (29%), Positives = 46/123 (37%), Gaps = 28/123 (22%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G P K ETG ++ P P+GP E+GE G G +G +
Sbjct: 626 PGLRGLPGKDGETG---AAGPPGPAGP------AGERGEQGAPGPSGFQG----LPGPPG 672
Query: 65 PEAESG----PAAPGPSDQPSQELPQHELP-PEEPVSEGTQHDPLSQESELEEPLSKGRP 119
P E G PG + P P+ E P E S G Q L+ P +G P
Sbjct: 673 PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQ--------GLQGP--RGLP 722
Query: 120 STP 122
TP
Sbjct: 723 GTP 725
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/72 (25%), Positives = 24/72 (33%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
G P G + P GP E+G A G +G +G + AP +
Sbjct: 723 GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD 782
Query: 69 SGPAAPGPSDQP 80
G GP P
Sbjct: 783 GGRGLTGPIGPP 794
Score = 28.5 bits (62), Expect = 1.4
Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG--AATKMAAVTAPE 66
GPP + + G +S PSGP+ V G+ G G G + T P
Sbjct: 1143 GPPGPSGDQG---ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA 1199
Query: 67 AESG-PAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPL 104
G P PGP P + P +G DPL
Sbjct: 1200 GPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP--DPL 1236
Score = 26.6 bits (57), Expect = 5.2
Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 1 MSPK--PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATK 58
M P+ P +G P G +P SGP G+ G GK G A +
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE 265
Query: 59 MAAVTAPEAESGPAAPG 75
A P PG
Sbjct: 266 RGPPGPQGARGFPGTPG 282
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 42.0 bits (97), Expect = 1e-04
Identities = 36/131 (27%), Positives = 47/131 (35%), Gaps = 18/131 (13%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGE---------AVRGGRRGKKGA 55
P SG P K G P P GP T E G R G G KG
Sbjct: 929 PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGD 988
Query: 56 ATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPV-------SEGTQ--HDPLSQ 106
+ AV AP A P +PGP+ ++ + E + P+ + G Q P
Sbjct: 989 RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGD 1048
Query: 107 ESELEEPLSKG 117
+ E EP +G
Sbjct: 1049 KGEAGEPGERG 1059
Score = 37.0 bits (84), Expect = 0.004
Identities = 24/82 (29%), Positives = 29/82 (35%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P A+G P A G S+ P P GP + K KG G G+ G
Sbjct: 824 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGP 883
Query: 65 PEAESGPAAPGPSDQPSQELPQ 86
P + P GPS PQ
Sbjct: 884 PGEKGEPGDDGPSGAEGPPGPQ 905
Score = 35.8 bits (81), Expect = 0.009
Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 3/117 (2%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP A G R + + +GP G + G +G++G A + AP +
Sbjct: 738 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 797
Query: 69 SGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTPLSP 125
APGP P+ + P G P + P S G P P P
Sbjct: 798 GPSGAPGPQGPTGVTGPKGARGAQGP--PGATGFP-GAAGRVGPPGSNGNPGPPGPP 851
Score = 35.0 bits (79), Expect = 0.015
Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 28/128 (21%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPK------------------KKTTKVAEKG 42
++ +P +GP K +G +P P GP+ + K EKG
Sbjct: 493 LTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKG 552
Query: 43 EAVRGGRRGKKGAATKMAAVTAPEAESGPA-------APGPSDQPSQELPQHELPPEEPV 95
G RG G + A P +GPA APGPS Q LP PP E
Sbjct: 553 LPGAPGLRGLPGKDGETGA-AGPPGPAGPAGERGEQGAPGPSG--FQGLPGPPGPPGEGG 609
Query: 96 SEGTQHDP 103
G Q P
Sbjct: 610 KPGDQGVP 617
Score = 34.7 bits (78), Expect = 0.019
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 9 GPPAKAKETGKRKSSSQPS---PSGPKKKTTKVAEKGEAVRGGRRGKKGAATKM--AAVT 63
G P A E GKR + +P P GP + +G + G G KGA + + +
Sbjct: 411 GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA 470
Query: 64 APEAESG----------PAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEP 113
P+ +G P A G + +P PQ ++ P E + P + +P
Sbjct: 471 GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 530
Query: 114 LSKGRP 119
G P
Sbjct: 531 GVMGFP 536
Score = 34.3 bits (77), Expect = 0.025
Identities = 27/110 (24%), Positives = 37/110 (33%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+G A G + S P P GP T +G G G GAA ++ +
Sbjct: 785 AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGN 844
Query: 68 ESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKG 117
P PGPS + + + + P E P E EP G
Sbjct: 845 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDG 894
Score = 33.5 bits (75), Expect = 0.043
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 19/89 (21%)
Query: 1 MSPK--PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKV---------AEKGEAVRGGR 49
M P+ P G A G R + QP P+GP KGEA G
Sbjct: 254 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 313
Query: 50 RGKKGAATKMAAVTAPEAESG-PAAPGPS 77
RG +GA P E G P +PGP+
Sbjct: 314 RGPEGA-------QGPRGEPGTPGSPGPA 335
Score = 33.1 bits (74), Expect = 0.056
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPE 66
A+GPP A G+R P PSG + GE + G +G G A V P
Sbjct: 571 AAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV-GPR 629
Query: 67 AESGPAAPGPSDQPSQE 83
E G PG P +
Sbjct: 630 GERG--FPGERGSPGAQ 644
Score = 32.7 bits (73), Expect = 0.073
Identities = 22/93 (23%), Positives = 28/93 (30%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G P E G + GP+ + G A G G G + A
Sbjct: 296 PGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGA 355
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSE 97
P P PGP P + L P+ E
Sbjct: 356 PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGE 388
Score = 32.3 bits (72), Expect = 0.095
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 6 RASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAP 65
R GP + E G K P GP E+G G +G+KGA P
Sbjct: 29 RQPGPKGQKGEPGDIKDIV--GPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEP 86
Query: 66 EAESGPAAPGPSDQP 80
P PGP P
Sbjct: 87 GTPGNPGPPGPPGPP 101
Score = 32.3 bits (72), Expect = 0.095
Identities = 31/122 (25%), Positives = 42/122 (34%), Gaps = 26/122 (21%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+G P E+G + P P GP+ + G A G RG G
Sbjct: 233 AGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDG------------- 279
Query: 68 ESGPAAP----GPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTPL 123
+ GPA P GP+ P P P ++G + P +G P TP
Sbjct: 280 QPGPAGPPGPVGPAGGPGF--------PGAPGAKG-EAGPTGARGPEGAQGPRGEPGTPG 330
Query: 124 SP 125
SP
Sbjct: 331 SP 332
Score = 31.6 bits (70), Expect = 0.16
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 20/95 (21%)
Query: 2 SPKPR-ASGPPAKAKETGKRKSSSQPS------------PSGPKKKTTKVAEKGEAVRGG 48
SP P ASG P G + S+ P P GP+ T + KG+ G
Sbjct: 331 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 390
Query: 49 RRGKKGAATKMAAVTAPEAESGPAAPGPSDQPSQE 83
G KG P+ E GPA P + P+ E
Sbjct: 391 IAGFKGE-------QGPKGEPGPAGPQGAPGPAGE 418
Score = 31.6 bits (70), Expect = 0.16
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 3 PKPR-ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
P P+ A+GP +TG+ + GPK + +G G GK+GA +
Sbjct: 371 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGG 430
Query: 62 V--TAPEAESGPAAPGPSDQPSQE 83
V P E G APG P Q+
Sbjct: 431 VGPIGPPGERG--APGNRGFPGQD 452
Score = 31.2 bits (69), Expect = 0.21
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+GPP + E G S P GP+ ++G G+RG++G P
Sbjct: 881 AGPPGEKGEPGDDGPSGAEGPPGPQGLA---GQRGIVGLPGQRGERGFPGLPGPSGEPGK 937
Query: 68 ESGPAAPGPSDQPSQELPQHEL-PPEEPVSEGT 99
+ P A G P P P EP EG+
Sbjct: 938 QGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS 970
Score = 31.2 bits (69), Expect = 0.21
Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 21/97 (21%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKV------------AEKGEAVRGGRRGK 52
P G P A TGK+ + GP + +KGEA G RG
Sbjct: 1001 PGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGL 1060
Query: 53 KG--AATKMAAVTAP------EAESGPAAP-GPSDQP 80
KG T + + P + SGPA P GP P
Sbjct: 1061 KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPP 1097
Score = 30.4 bits (67), Expect = 0.36
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 7 ASGPPAKAKETG---KRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
A+G P + E G R + +P +GP+ K GE R G G +GA + +
Sbjct: 475 ANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMG 534
Query: 64 APEAESGPAAPGPSDQ 79
P + PG + +
Sbjct: 535 FPGPKGANGEPGKAGE 550
Score = 30.4 bits (67), Expect = 0.36
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKM----- 59
P A GPP G+R ++ +GPK V EKG G+ G +G +
Sbjct: 671 PGAQGPPGLQGMPGERGAA---GIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGP 727
Query: 60 AAVTAPEAESGPAAPGPS 77
A + E GP PGP+
Sbjct: 728 AGANGEKGEVGP--PGPA 743
Score = 30.4 bits (67), Expect = 0.36
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 8/117 (6%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPE 66
A GPP G+R P G + G G GK+GA P
Sbjct: 898 AEGPPGPQGLAGQRGIVGLPGQRGER------GFPGLPGPSGEPGKQGAPGASGDRGPPG 951
Query: 67 AESGPAAPGPSDQPSQE-LPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P GP+ +P +E P + PP + G + D + + P + G P +P
Sbjct: 952 PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGD-RGETGAVGAPGAPGPPGSP 1007
Score = 29.6 bits (65), Expect = 0.62
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGR------RGKKGAATKMAAV 62
GPP +GK ++ P P GP + E G A G G G M+A
Sbjct: 1095 GPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAF 1154
Query: 63 TAPEAESGPAAPGP-------SDQPSQELPQHE 88
A GP GP +DQ + L QH+
Sbjct: 1155 ----AGLGPREKGPDPLQYMRADQAAGGLRQHD 1183
Score = 29.3 bits (64), Expect = 0.81
Identities = 20/76 (26%), Positives = 26/76 (34%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G E G+ S P GP K + GEA + G+ G++G A
Sbjct: 149 PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGF 208
Query: 65 PEAESGPAAPGPSDQP 80
P P G P
Sbjct: 209 PGTPGLPGVKGHRGYP 224
Score = 29.3 bits (64), Expect = 0.81
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
G P K G P P+G + +V G A G RG G + T P
Sbjct: 708 GAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGE----TGPPGP 763
Query: 69 SGPAAP-GPSDQPSQELPQHE 88
+G A P G QP + Q E
Sbjct: 764 AGFAGPPGADGQPGAKGEQGE 784
Score = 28.9 bits (63), Expect = 1.1
Identities = 19/77 (24%), Positives = 25/77 (32%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP E GK P +G E+G G G +G P +
Sbjct: 600 GPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTD 659
Query: 69 SGPAAPGPSDQPSQELP 85
A GP+ P + P
Sbjct: 660 GPKGASGPAGPPGAQGP 676
Score = 28.5 bits (62), Expect = 1.4
Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GP G + + P+G + +GE G G GA+
Sbjct: 287 PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGI 346
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEP 113
P A+ APG + P P PP + G PL + + EP
Sbjct: 347 PGAKGSAGAPGIAGAPG--FPGPRGPPGPQGATG----PLGPKGQTGEP 389
Score = 28.5 bits (62), Expect = 1.4
Identities = 36/123 (29%), Positives = 46/123 (37%), Gaps = 28/123 (22%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G P K ETG ++ P P+GP E+GE G G +G +
Sbjct: 557 PGLRGLPGKDGETG---AAGPPGPAGP------AGERGEQGAPGPSGFQG----LPGPPG 603
Query: 65 PEAESG----PAAPGPSDQPSQELPQHELP-PEEPVSEGTQHDPLSQESELEEPLSKGRP 119
P E G PG + P P+ E P E S G Q L+ P +G P
Sbjct: 604 PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQ--------GLQGP--RGLP 653
Query: 120 STP 122
TP
Sbjct: 654 GTP 656
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/72 (25%), Positives = 24/72 (33%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
G P G + P GP E+G A G +G +G + AP +
Sbjct: 654 GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD 713
Query: 69 SGPAAPGPSDQP 80
G GP P
Sbjct: 714 GGRGLTGPIGPP 725
Score = 28.5 bits (62), Expect = 1.4
Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG--AATKMAAVTAPE 66
GPP + + G +S PSGP+ V G+ G G G + T P
Sbjct: 1074 GPPGPSGDQG---ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA 1130
Query: 67 AESG-PAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPL 104
G P PGP P + P +G DPL
Sbjct: 1131 GPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP--DPL 1167
Score = 26.6 bits (57), Expect = 5.2
Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 1 MSPK--PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATK 58
M P+ P +G P G +P SGP G+ G GK G A +
Sbjct: 137 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE 196
Query: 59 MAAVTAPEAESGPAAPG 75
A P PG
Sbjct: 197 RGPPGPQGARGFPGTPG 213
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 41.6 bits (96), Expect = 2e-04
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 13/129 (10%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG--------AATKM 59
+GPP + G QP P GP ++G G+RG++G
Sbjct: 959 AGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGK 1018
Query: 60 AAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPV-SEGT--QHDPLSQESELEEPLSK 116
T + GP PGP P P E PE P ++GT + + + + +P
Sbjct: 1019 VGPTGATGDKGP--PGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPA 1076
Query: 117 GRPSTPLSP 125
G P + +P
Sbjct: 1077 GLPGSQGAP 1085
Score = 37.4 bits (85), Expect = 0.003
Identities = 37/127 (29%), Positives = 45/127 (35%), Gaps = 20/127 (15%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA-------- 60
GPP G+ S P P G K E G A G+RG G ++
Sbjct: 600 GPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPP 659
Query: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEE---PVSEGTQHD-----PLSQESELEE 112
+ E GP PGP+ Q LP PP E P +G D PL E
Sbjct: 660 GLAGERGEQGP--PGPTG--FQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGN 715
Query: 113 PLSKGRP 119
P +G P
Sbjct: 716 PGERGEP 722
Score = 35.8 bits (81), Expect = 0.009
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 5 PRASGPPAKAKETGKRKSSSQPS---PSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
P GPP + + G + P P GP+ + E+GE G G+KG MA
Sbjct: 680 PGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKG----MAG 735
Query: 62 VTAPEAESGPAAPGPSDQPSQELP 85
P+ G +PGPS P P
Sbjct: 736 GHGPDGPKG--SPGPSGTPGDTGP 757
Score = 35.8 bits (81), Expect = 0.009
Identities = 33/104 (31%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P +G P K TG P P GP V E G G G G + AV
Sbjct: 1010 PGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPE---GPAGNDGTPGRDGAV-- 1064
Query: 65 PEAESGPAA-PGPSDQP-SQELPQHELPPEEPVSEGTQHDPLSQ 106
E G PGP+ P SQ P P P G + DP S+
Sbjct: 1065 --GERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSR 1106
Score = 32.7 bits (73), Expect = 0.073
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P A GP +G S+ P GP+ T +G+ G G KG A
Sbjct: 428 PGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEA-------G 480
Query: 65 PEAESGP-AAPGPSDQPSQE 83
P+ E GP GP P +E
Sbjct: 481 PKGEPGPHGIQGPIGPPGEE 500
Score = 32.7 bits (73), Expect = 0.073
Identities = 34/127 (26%), Positives = 44/127 (34%), Gaps = 6/127 (4%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG--AATKM 59
S P +GPP G+R + P P G + + +G A G RG G
Sbjct: 749 SGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGP 808
Query: 60 AAVTAPEAESGP-AAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQ---ESELEEPLS 115
A T + E GP GP + E P V P Q + E EP
Sbjct: 809 AGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQ 868
Query: 116 KGRPSTP 122
KG +P
Sbjct: 869 KGDAGSP 875
Score = 32.0 bits (71), Expect = 0.12
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+GPP + + G P GP K E GE R G G+ G A A P A
Sbjct: 236 TGPPGEPGDPGPMGPIGSRGPEGPPGKP---GEDGEPGRNGNPGEVGFAGSPGARGFPGA 292
Query: 68 ESGPAAPGPSDQPSQELPQHEL 89
P G E P+ E+
Sbjct: 293 PGLPGLKGHRGHKGLEGPKGEV 314
Score = 32.0 bits (71), Expect = 0.12
Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 12/123 (9%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAV--TAPE 66
GPP + + G R P GP + +G G G KGA + V + P+
Sbjct: 495 GPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPK 554
Query: 67 AESG----------PAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSK 116
G P A G + P + P+ +L P E + P +P S
Sbjct: 555 GSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSM 614
Query: 117 GRP 119
G P
Sbjct: 615 GLP 617
Score = 32.0 bits (71), Expect = 0.12
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP E G S+ P P GP+ V G+ G G G +V E
Sbjct: 1155 GPPGPNGEQG---SAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPE 1211
Query: 69 SGPAAPGPSDQP 80
P PGP P
Sbjct: 1212 GPPGEPGPPGPP 1223
Score = 31.2 bits (69), Expect = 0.21
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P A+G P A G + P P+GP + E G+ G RG G+ ++
Sbjct: 905 PGATGFPGSAGRVGPPGPAGAPGPAGP------LGEPGKEGPPGLRGDPGSHGRV----- 953
Query: 65 PEAESGPAAP--GPSDQ 79
+ GPA P GP D+
Sbjct: 954 --GDRGPAGPPGGPGDK 968
Score = 30.8 bits (68), Expect = 0.28
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP +A GKR P P GP+ ++G+ + G RG G + P E
Sbjct: 1110 GPPGRA---GKR---GLPGPQGPRGDKGDHGDRGDRGQKGHRGFTG-LQGLPGPPGPNGE 1162
Query: 69 SGPAA-PGP 76
G A PGP
Sbjct: 1163 QGSAGIPGP 1171
Score = 29.6 bits (65), Expect = 0.62
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 48 GRRGKKGAATKMAAVTAPEAESGPAAPGPSDQPSQEL-PQHELPPEEPVSEGTQHDPLSQ 106
GR+G+KG + VT GPA P S P E P+ P P +G +P
Sbjct: 110 GRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGP--QGIDGEP-GV 166
Query: 107 ESELEEPLSKGRPSTP 122
+ P G PS P
Sbjct: 167 PGQPGAPGPPGHPSHP 182
Score = 29.3 bits (64), Expect = 0.81
Identities = 29/111 (26%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 16 ETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESGP---- 71
E G S + P+GP + +G GR G +GA + A P + GP
Sbjct: 313 EVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMP-GKPGPMGPL 371
Query: 72 AAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
PG S P + E P P Q E P G P P
Sbjct: 372 GIPGSSGFPGNPGMKGE---AGPTGARGPEGPQGQRGETGPPGPVGSPGLP 419
Score = 28.9 bits (63), Expect = 1.1
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 27/82 (32%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
+P +GPP G+R +P P GP+ G G+ G +
Sbjct: 130 RPGPAGPPGSQGPRGERGPKGRPGPRGPQ---------------GIDGEPGVPGQ----- 169
Query: 64 APEAESGPAAPGPSDQPSQELP 85
P APGP PS P
Sbjct: 170 -------PGAPGPPGHPSHPGP 184
Score = 28.9 bits (63), Expect = 1.1
Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 15/88 (17%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG--AATKMAAV 62
P GPP A TG++ +P P G V G G RG+ G A A
Sbjct: 800 PGPLGPPGPAGPTGEK---GEPGPRG------LVGPPGSRGNPGSRGENGPTGAVGFAGP 850
Query: 63 TAPEAESG----PAAPGPSDQPSQELPQ 86
P+ + G P PG PQ
Sbjct: 851 QGPDGQPGVKGEPGEPGQKGDAGSPGPQ 878
Score = 28.5 bits (62), Expect = 1.4
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 1 MSPKPRASGP---PAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAAT 57
M KP GP P + G + P+G + ++GE G G G
Sbjct: 361 MPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPG 420
Query: 58 KMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPE 92
+ P A+ +PG S P P P+
Sbjct: 421 AIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQ 455
Score = 28.5 bits (62), Expect = 1.4
Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 6/123 (4%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGP------KKKTTKVAEKGEAVRGGRRGKKGAATK 58
P + G P E G + P GP K + + +KG+A G +G G+
Sbjct: 827 PGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGP 886
Query: 59 MAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGR 118
P + G GP + P P PL + + P +G
Sbjct: 887 HGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGD 946
Query: 119 PST 121
P +
Sbjct: 947 PGS 949
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/67 (25%), Positives = 25/67 (37%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
G P + G R + P GP+ K + GE R G G G + ++ P +
Sbjct: 561 GRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPK 620
Query: 69 SGPAAPG 75
PG
Sbjct: 621 GSSGDPG 627
Score = 26.9 bits (58), Expect = 4.0
Identities = 26/100 (26%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
+P G P E G++ + P P G G G RG +G A
Sbjct: 856 QPGVKGEPG---EPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPP---GATG 909
Query: 64 APEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDP 103
P + PGP+ P P E E P G + DP
Sbjct: 910 FPGSAGRVGPPGPAGAPGPAGPLGEPGKEGP--PGLRGDP 947
Score = 26.9 bits (58), Expect = 4.0
Identities = 23/77 (29%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P +G A G P P GP K G G RG G A
Sbjct: 1157 PGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEA-------G 1209
Query: 65 PEAESG-PAAPGPSDQP 80
PE G P PGP P
Sbjct: 1210 PEGPPGEPGPPGPPGPP 1226
Score = 26.6 bits (57), Expect = 5.2
Identities = 18/71 (25%), Positives = 24/71 (33%)
Query: 18 GKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESGPAAPGPS 77
G S P +GP E+G A G +G +G + A + PGP
Sbjct: 744 GSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPL 803
Query: 78 DQPSQELPQHE 88
P P E
Sbjct: 804 GPPGPAGPTGE 814
Score = 26.2 bits (56), Expect = 6.8
Identities = 27/117 (23%), Positives = 36/117 (30%), Gaps = 6/117 (5%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATK---MAAVTAP 65
G P E G P GP+ + G G+RG G K M + P
Sbjct: 315 GAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIP 374
Query: 66 EAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
+ P PG + P PE P + + P P + G TP
Sbjct: 375 GSSGFPGNPGMKGEAG---PTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTP 428
Score = 26.2 bits (56), Expect = 6.8
Identities = 31/129 (24%), Positives = 42/129 (32%), Gaps = 9/129 (6%)
Query: 2 SPKPRAS-------GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG 54
SP P+ S G P G + + GP + GE + G RG G
Sbjct: 451 SPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPG 510
Query: 55 AATKMAAVTAPEAESGPAAPGPSDQPSQELPQHEL-PPEEPVSEGTQHDPLSQESELEEP 113
V A PG P + Q E P +G+Q DP + E P
Sbjct: 511 TVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDP-GRPGEPGLP 569
Query: 114 LSKGRPSTP 122
++G P
Sbjct: 570 GARGLTGNP 578
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 41.2 bits (95), Expect = 2e-04
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
+P +GPP G P G + T ++ + G G RG KGAA A +
Sbjct: 555 RPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAG--AGLD 612
Query: 64 APEAESGP----AAPGPSDQPSQELPQHELPPEEP 94
PE + GP PG S P PP +P
Sbjct: 613 GPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDP 647
Score = 30.4 bits (67), Expect = 0.36
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 17/89 (19%)
Query: 5 PRASGPPAKAKE---TGKRKSSSQPSPSGPKKKTTKVAEKGEA------------VRGGR 49
P GPP K + G+ P P GPK K + GEA R G
Sbjct: 34 PGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGP 93
Query: 50 RGKKGAATKMAAV--TAPEAESGPAAPGP 76
G KGA + ++ P G PGP
Sbjct: 94 PGPKGAPGERGSLGPPGPPGLGGKGLPGP 122
Score = 28.5 bits (62), Expect = 1.4
Identities = 28/103 (27%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P +G P G R P P GP + +G G GK G +
Sbjct: 216 PGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGE----RG 271
Query: 65 PEAESGP----AAPGPSDQPSQELPQHELPPEEPVSEGTQHDP 103
PE GP PGP P P E P P +G P
Sbjct: 272 PEGFRGPKGDLGRPGPKGTPGVAGPSGE--PGMPGKDGQNGVP 312
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/82 (24%), Positives = 24/82 (29%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P +G + E G+ + PSG GE G RG GA A
Sbjct: 339 PGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGA 398
Query: 65 PEAESGPAAPGPSDQPSQELPQ 86
P G P PQ
Sbjct: 399 PGVRGFQGQKGSMGDPGLPGPQ 420
Score = 25.8 bits (55), Expect = 8.9
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG-----AATKM 59
P +GP + GK + P G +KGEA R G G+KG
Sbjct: 291 PGVAGPSGEPGMPGKDGQNGVPGLDG---------QKGEAGRNGAPGEKGPNGLPGLPGR 341
Query: 60 AAVTAPEAESGPAA----PGPSDQP 80
A + E G A GPS +P
Sbjct: 342 AGSKGEKGERGRAGELGEAGPSGEP 366
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.8 bits (94), Expect = 3e-04
Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 6/128 (4%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
K GP + G+ P P GP + G A G G +G A + V
Sbjct: 903 KEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVG 962
Query: 64 AP--EAESG-PAAPGPSDQPSQELP---QHELPPEEPVSEGTQHDPLSQESELEEPLSKG 117
P E G P PGPS +P ++ P E P P+ P + P ++G
Sbjct: 963 LPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEG 1022
Query: 118 RPSTPLSP 125
P SP
Sbjct: 1023 SPGRDGSP 1030
Score = 37.0 bits (84), Expect = 0.004
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA--AV 62
P A G P GK + P+GP V +G A G RG KG + +
Sbjct: 1048 PGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGI 1107
Query: 63 TAPEAESG-PAAPGPSDQPSQELPQHELPPEEP 94
SG PGP P ++ P P P
Sbjct: 1108 KGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGP 1140
Score = 36.2 bits (82), Expect = 0.007
Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 9/126 (7%)
Query: 2 SPKPRA-SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
+P P+ GPP + E G +S P GP K + GEA + GR G++G
Sbjct: 195 APGPQGFQGPPGEPGEPG---ASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQG 251
Query: 61 AVTAPEAESGPAAPGPSDQPSQELPQHEL----PPEEPVSEGTQHDPLSQESELEEPLSK 116
A P P G + + + P EP S G P Q P +
Sbjct: 252 ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP-GQMGPRGLPGER 310
Query: 117 GRPSTP 122
GRP P
Sbjct: 311 GRPGAP 316
Score = 36.2 bits (82), Expect = 0.007
Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 12/131 (9%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG--------A 55
+P A G P A G + + P P+GP + G G RG G
Sbjct: 822 QPGAKGEPGDA---GAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPG 878
Query: 56 ATKMAAVTAPEAESGPAAP-GPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPL 114
A P +GP P GP+ + + P+ E P E P E P
Sbjct: 879 AAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPG 938
Query: 115 SKGRPSTPLSP 125
+ G P +P
Sbjct: 939 ADGPAGAPGTP 949
Score = 36.2 bits (82), Expect = 0.007
Identities = 27/99 (27%), Positives = 32/99 (32%), Gaps = 9/99 (9%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAE---------KGEAVRGGRRGKKGA 55
P SG P K +G P P GP E +G R G G KG
Sbjct: 976 PGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGD 1035
Query: 56 ATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEP 94
+ P A P APGP + + E P P
Sbjct: 1036 RGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGP 1074
Score = 35.8 bits (81), Expect = 0.009
Identities = 30/125 (24%), Positives = 41/125 (32%), Gaps = 6/125 (4%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
++ P + GP K G +P P GP +G+A G G KGAA +
Sbjct: 540 LTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPP------GARGQAGVMGFPGPKGAAGEPG 593
Query: 61 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPS 120
P A GP+ + + Q P P E + P P G P
Sbjct: 594 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPG 653
Query: 121 TPLSP 125
P
Sbjct: 654 EAGKP 658
Score = 35.4 bits (80), Expect = 0.011
Identities = 30/120 (25%), Positives = 36/120 (30%), Gaps = 10/120 (8%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P A G P E G + P GP G G +G +G+A A
Sbjct: 817 PGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGF 876
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ--HDPLSQESELEEPLSKGRPSTP 122
P A PGPS PP P G + P + P G P P
Sbjct: 877 PGAAGRVGPPGPSGNAG--------PPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPP 928
Score = 34.7 bits (78), Expect = 0.019
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 5 PRASGPPAKAKETGKRKSSSQ---PSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
P A+G P A G S P P GP K +GE GR G+ G
Sbjct: 871 PGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPP----G 926
Query: 62 VTAPEAESG-PAAPGPSDQPSQELPQ 86
P E G P A GP+ P PQ
Sbjct: 927 PPGPAGEKGSPGADGPAGAPGTPGPQ 952
Score = 33.9 bits (76), Expect = 0.033
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKK---TTKVAEKGEAVRGGRRGKKG--AATK 58
+P A GP G ++ P P+GP V KGEA G RG +G
Sbjct: 312 RPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRG 371
Query: 59 MAAVTAPEAESGPAA-PGPSDQP 80
P +GPA PG QP
Sbjct: 372 EPGPPGPAGAAGPAGNPGADGQP 394
Score = 33.5 bits (75), Expect = 0.043
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 15/103 (14%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG-----AATKMAAVT 63
GPP G++ S P+GP+ G+ G G G T A
Sbjct: 1118 GPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPV 1177
Query: 64 APEAESGPAAPGPSDQPS-----QELPQHELPPEEPVSEGTQH 101
P GP PGP PS LPQ PP+E +G ++
Sbjct: 1178 GPPGPPGP--PGPPGPPSAGFDFSFLPQ---PPQEKAHDGGRY 1215
Score = 32.7 bits (73), Expect = 0.073
Identities = 29/113 (25%), Positives = 37/113 (32%), Gaps = 3/113 (2%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P +GP G + + P GP+ +GE G G G A A
Sbjct: 334 PGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQ 393
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKG 117
P A+ APG + P + P P G P E P SKG
Sbjct: 394 PGAKGANGAPGIAGAPGFPGAR---GPSGPQGPGGPPGPKGNSGEPGAPGSKG 443
Score = 32.7 bits (73), Expect = 0.073
Identities = 26/118 (22%), Positives = 39/118 (33%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P +G P +A G + + P GP KT G+ R G G GA + +
Sbjct: 523 PGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGF 582
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P + PG + + P + P E P E +G +P
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSP 640
Score = 32.7 bits (73), Expect = 0.073
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP GK + P GP + E+G A G +G G A P +
Sbjct: 602 GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ 661
Query: 69 SGP---AAPGPS 77
P APGPS
Sbjct: 662 GVPGDLGAPGPS 673
Score = 32.7 bits (73), Expect = 0.073
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P + G P G+R ++ P P G + G + G RG G A
Sbjct: 718 PGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGA 777
Query: 65 P--EAESGPAAP-GPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRP 119
P + ESGP+ P GP+ ++ P P P G P + +P +KG P
Sbjct: 778 PGDKGESGPSGPAGPTG--ARGAPGDRGEPGPPGPAGFAGPPGAD----GQPGAKGEP 829
Score = 32.0 bits (71), Expect = 0.12
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 3 PKPR-ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
P P+ A+G P KA E G P+G + G A G RG++G A
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 642
Query: 62 VTAPEAESGPAA-PGPSDQPSQE 83
P GPA PG + +P ++
Sbjct: 643 QGLP----GPAGPPGEAGKPGEQ 661
Score = 31.6 bits (70), Expect = 0.16
Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+GP E G + P GP+ + G G RG GA P
Sbjct: 280 AGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGA----TGAAGPPG 335
Query: 68 ESGPAAPGPSDQPSQELPQHELPPEEP-VSEGTQ 100
+GPA GP P + E P+ P SEG Q
Sbjct: 336 PTGPA--GPPGFPGAVGAKGEAGPQGPRGSEGPQ 367
Score = 31.6 bits (70), Expect = 0.16
Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 28/118 (23%)
Query: 9 GPPAKAKETGKRKSSSQPSPSG----PKKK-----------------TTKVAEKGEAVRG 47
GPP A E GKR + +P P+G P ++ E+G
Sbjct: 458 GPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPA 517
Query: 48 GRRGKKGAATKMAAVTAPEAE---SGPAAPGPSDQPSQELPQHE----LPPEEPVSEG 98
G +G G A + P A+ P +PGP + P + PP P + G
Sbjct: 518 GPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARG 575
Score = 31.6 bits (70), Expect = 0.16
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+GP A E G P P+GPK + GEA G +G G+ P+
Sbjct: 502 AGPKGPAGERGS------PGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGS----PGPDG 551
Query: 68 ESGPAAP-------GPSDQP 80
++GP P GP P
Sbjct: 552 KTGPPGPAGQDGRPGPPGPP 571
Score = 31.2 bits (69), Expect = 0.21
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 5 PRASGPPAKAKETGKRKSSSQ---PSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
P +GPP +A + G++ P PSG + + E+G G G +GA
Sbjct: 646 PGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGN 705
Query: 62 VTAPEAESGPAAPGPSDQPS-QELPQHELPPEEPVSEGTQHD 102
A P APG P Q +P P +G + D
Sbjct: 706 DGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGD 747
Score = 30.0 bits (66), Expect = 0.47
Identities = 33/130 (25%), Positives = 44/130 (33%), Gaps = 12/130 (9%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEA-VRG-----GRRGKKGAATKMAA 61
SGP G + +S +P G K T E G V+G G GK+GA +
Sbjct: 418 SGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGP 477
Query: 62 V---TAPEAESGPAA---PGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLS 115
P GP + PG + P E P + E P +
Sbjct: 478 TGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 537
Query: 116 KGRPSTPLSP 125
KG +P SP
Sbjct: 538 KGLTGSPGSP 547
Score = 30.0 bits (66), Expect = 0.47
Identities = 30/96 (31%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GP A E GK P P G V G+ G +G G A P E
Sbjct: 584 GPKGAAGEPGKAGERGVPGPPG------AVGPAGKDGEAGAQGPPGPA-------GPAGE 630
Query: 69 SGPAAPGPSDQPS-QELPQHELPPEEPVSEGTQHDP 103
G GP+ P Q LP PP E G Q P
Sbjct: 631 RG--EQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVP 664
Score = 30.0 bits (66), Expect = 0.47
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP A G + QP G K + KG+A G G G + V AP A+
Sbjct: 806 GPPGPAGFAGPPGADGQP---GAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAK 862
Query: 69 SGPAAPGP 76
+ GP
Sbjct: 863 GARGSAGP 870
Score = 29.6 bits (65), Expect = 0.62
Identities = 30/129 (23%), Positives = 45/129 (34%), Gaps = 14/129 (10%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P SG + G+R P P+GP+ G G +G GA + A
Sbjct: 670 PGPSGARGERGFPGERGVQGPPGPAGPR------GANGAPGNDGAKGDAGAPGAPGSQGA 723
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPE----EPVSEGTQ--HDPLSQESELEEPLSKGR 118
P + P G + P + + + P+ P +G + P+ P KG
Sbjct: 724 PGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGE 783
Query: 119 --PSTPLSP 125
PS P P
Sbjct: 784 SGPSGPAGP 792
Score = 28.9 bits (63), Expect = 1.1
Identities = 24/87 (27%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP A G + S PSGP T G+ G G G A A P A+
Sbjct: 770 GPPGPAGAPGDKGESG---PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAK 826
Query: 69 SGPAAPGPSDQPSQELPQHELPPEEPV 95
P G P P P+
Sbjct: 827 GEPGDAGAKGDAGPPGPAGPAGPPGPI 853
Score = 28.1 bits (61), Expect = 1.8
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 8 SGPPAKAKETGKRKS---SSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
SGP A TG R + +P P GP G+ G G GA
Sbjct: 784 SGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGA----KGDAG 839
Query: 65 PEAESGPAA-PGP 76
P +GPA PGP
Sbjct: 840 PPGPAGPAGPPGP 852
Score = 27.7 bits (60), Expect = 2.3
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 5 PRASGPPAKAKETGKRKS---SSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATK--M 59
P +GP + E G S P P+GP + K E+G G G GA +
Sbjct: 622 PGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGF 681
Query: 60 AAVTAPEAESGPAAP-GPSDQPSQELPQHEL-PPEEPVSEG 98
+ GPA P G + P + + + P P S+G
Sbjct: 682 PGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG 722
Score = 25.8 bits (55), Expect = 8.9
Identities = 28/110 (25%), Positives = 36/110 (32%), Gaps = 24/110 (21%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P A G + G + P GP K ++GE G G G
Sbjct: 1030 PGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVG---------- 1079
Query: 65 PEAESGPAAP-GP-------SDQPSQELPQH------ELPPEEPVSEGTQ 100
P GPA P GP +Q + + H + PP P S G Q
Sbjct: 1080 PVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQ 1129
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 40.8 bits (94), Expect = 3e-04
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 11 PAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESG 70
P+ ++ +KSSS+P P+K + +E+G G K+ AT A+ + + S
Sbjct: 1246 PSAREDPAPKKSSSEPP---PRKPVEEKSEEGNVSAPGPESKQ--ATTPASRKSSKQVSQ 1300
Query: 71 PAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSK---GRPSTPL 123
PA P P+ P+ E+P P SE + P ES E+ K RPS P+
Sbjct: 1301 PALVIPPQPPTTGPPRKEVPKTTP-SEPKKKQPPPPESGPEQSKQKKVAPRPSIPV 1355
Score = 30.4 bits (67), Expect = 0.36
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 2/109 (1%)
Query: 5 PRASGPPAKAKETGKRKSS-SQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
P + G + +G+R +S S P P+ PK KT + + G + T +
Sbjct: 3509 PTSPGGSPSSPSSGQRSASPSVPGPTKPKPKTKRFQLPLDKGNGKKHKVSHLRTSSSEAH 3568
Query: 64 APEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEE 112
P+ E+ G + P E Q + E S+ P Q + L E
Sbjct: 3569 IPDQETTSLTSG-TGTPGAEAEQQDTASVEQSSQKECGQPAGQVAVLPE 3616
Score = 27.7 bits (60), Expect = 2.3
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 29/89 (32%)
Query: 3 PKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAV 62
P+P +GPP RK + +PS PKKK E G
Sbjct: 1307 PQPPTTGPP--------RKEVPKTTPSEPKKKQPPPPESG-------------------- 1338
Query: 63 TAPEAESGPAAPGPSDQPSQELPQHELPP 91
+++ AP PS Q+ + E PP
Sbjct: 1339 -PEQSKQKKVAPRPSIPVKQKPKEKEKPP 1366
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 40.8 bits (94), Expect = 3e-04
Identities = 35/122 (28%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA--VTA 64
A G P A G P PSGP +G + G RG+KGAA + +
Sbjct: 390 AHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVG 449
Query: 65 PEAESG-PAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTPL 123
P + G P PGP + P P P GT+ D +G P P
Sbjct: 450 PRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGD-------------RGAPGIPG 496
Query: 124 SP 125
SP
Sbjct: 497 SP 498
Score = 40.4 bits (93), Expect = 4e-04
Identities = 35/125 (28%), Positives = 47/125 (37%), Gaps = 8/125 (6%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G P K +TG P GP K GE G G+KG+ + +
Sbjct: 746 PGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGL 805
Query: 65 P---EAESGPAAPGPSDQPSQE-LPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPS 120
P P PG P +E +P P EP +G + DP + + P KG+P
Sbjct: 806 PGFLGPRGPPGEPGEKGVPGKEGVPG---KPGEPGFKGERGDP-GIKGDKGPPGGKGQPG 861
Query: 121 TPLSP 125
P P
Sbjct: 862 DPGIP 866
Score = 36.6 bits (83), Expect = 0.005
Identities = 36/132 (27%), Positives = 46/132 (34%), Gaps = 17/132 (12%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA--AVTA 64
A+GPP GK P P GP E+G+ R G+ G G K +
Sbjct: 658 AAGPPGIQGSPGKE---GPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPG 714
Query: 65 PEAESGP----------AAPGP-SDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEP 113
PE GP APGP + + LP E P + G P + P
Sbjct: 715 PEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPT-GPQGPQGPRGPP 773
Query: 114 LSKGRPSTPLSP 125
G P +P P
Sbjct: 774 GKNGSPGSPGEP 785
Score = 32.3 bits (72), Expect = 0.095
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
+P PR P + G++ P G + + ++ +G G +G++GA A
Sbjct: 340 TPHPRM---PGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGA 396
Query: 62 VTAPEAESGPAAPGPSDQP 80
P A APGPS P
Sbjct: 397 AGNPGAPGHVGAPGPSGPP 415
Score = 32.0 bits (71), Expect = 0.12
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
+P SG P + G+ S P GP+ + EKG + G GK G
Sbjct: 784 EPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERG 843
Query: 64 APEAESGPAAPGPSDQPSQE-LPQHE 88
P + PG QP +P H+
Sbjct: 844 DPGIKGDKGPPGGKGQPGDPGIPGHK 869
Score = 31.2 bits (69), Expect = 0.21
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGA--ATKMAA 61
K G P E GK P P G + G++ G RG+ GA
Sbjct: 691 KEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEG 750
Query: 62 VTAPEAESGPAAPGPSDQPSQELPQHELP--PEEPVSEGT 99
+ + ++GP P P ++ P P EP GT
Sbjct: 751 LPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGT 790
Score = 31.2 bits (69), Expect = 0.21
Identities = 37/133 (27%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G P K E G + P G K KG+ G G KG M
Sbjct: 824 PGKEGVPGKPGEPGFKGERGDPGIKGDKGPP---GGKGQPGDPGIPGHKGHTGLMGPQGL 880
Query: 65 PEAESGPAAP-GPSDQPSQELPQHELPPEEPVSEGTQHD-----------PLSQESELEE 112
P E+GP P GP QP + E P E + Q + L+Q
Sbjct: 881 P-GENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYM 939
Query: 113 PLSKGRPSTPLSP 125
S+GRP P P
Sbjct: 940 KSSQGRPGPPGPP 952
Score = 30.0 bits (66), Expect = 0.47
Identities = 30/123 (24%), Positives = 39/123 (31%), Gaps = 5/123 (4%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
KP G K E G P +GP+ + GE + G +G G M
Sbjct: 586 KPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPG 645
Query: 64 APEAESGPAAPGPSDQPS-QELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P G + P Q P E PP G P + E + G+P P
Sbjct: 646 NPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRD----GKPGPP 701
Query: 123 LSP 125
P
Sbjct: 702 GEP 704
Score = 30.0 bits (66), Expect = 0.47
Identities = 36/127 (28%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 3 PKPRA-SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG--AATKM 59
P P+ SG P E GK +P P G + K E G G RG G T
Sbjct: 674 PGPQGPSGLPGIPGEEGKEGRDGKPGPPG---EPGKAGEPGLPGPEGARGPPGFKGHTGD 730
Query: 60 AAVTAPEAESGP-AAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGR 118
+ P ESG PG P ++ P+ P +G + P S P S G
Sbjct: 731 SGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGP--QGPRGPPGKNGS----PGSPGE 784
Query: 119 PSTPLSP 125
P +P
Sbjct: 785 PGPSGTP 791
Score = 29.6 bits (65), Expect = 0.62
Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 14/119 (11%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+G P + E G + P G K + E G G RG+KG
Sbjct: 276 AGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKG------------- 322
Query: 68 ESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDP-LSQESELEEPLSKGRPSTPLSP 125
E+GPA P + H P E +G + DP L E L+ + P P P
Sbjct: 323 EAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGP 381
Score = 29.3 bits (64), Expect = 0.81
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTT---KVAEKGEAVRGGRRGKKGAATKMAAVT 63
A PPA K S +P P GP K + GE R G+ G +G + +
Sbjct: 932 AQMPPAYMKS-----SQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKG 986
Query: 64 APEAESGPAAPGPSDQPSQELPQHELPPEEP 94
A+ P APG + P P EP
Sbjct: 987 ERGAKGDPGAPGVGLRGEMGPPGIPGQPGEP 1017
Score = 26.6 bits (57), Expect = 5.2
Identities = 31/118 (26%), Positives = 35/118 (29%), Gaps = 12/118 (10%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P +GP E G Q G + G G G GAA +
Sbjct: 608 PGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGS 667
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P E P GPS P +P EE EG P EP G P P
Sbjct: 668 PGKEGPPGPQGPSGLPG-------IPGEEG-KEGRDGKP----GPPGEPGKAGEPGLP 713
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 40.8 bits (94), Expect = 3e-04
Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 26/131 (19%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQ---PSPSGPKKK---------------------TT 36
MS KP A GPP E G+R P P GP K
Sbjct: 888 MSGKPGAPGPPGVPGEPGERGPVGDIGFPGPEGPSGKPGINGKDGIPGAQGIMGKPGDRG 947
Query: 37 KVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVS 96
E+G+ G RG +G K +T + GP P P ++ S P H+ PP P
Sbjct: 948 PKGERGDQGIPGDRGSQGERGK-PGLTGMKGAIGPMGP-PGNKGSMGSPGHQGPPGSPGI 1005
Query: 97 EGTQHDPLSQE 107
G D +S E
Sbjct: 1006 PGIPADAVSFE 1016
Score = 31.6 bits (70), Expect = 0.16
Identities = 33/126 (26%), Positives = 44/126 (34%), Gaps = 7/126 (5%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG--AATKMAAV 62
P + G E G+ P G K + KGE G +G+KG A +
Sbjct: 300 PGSPGQKGHKGEPGENGLHGAPGFPGQKGEQGFEGSKGETGEKGEQGEKGDPALAGLNGE 359
Query: 63 TAPEAESGP-AAPGPSDQPSQELPQHELPPEEPVSEGTQ--HDPLSQESELEEPLSKGRP 119
+ + GP PGP + P PP P S G Q P +E + G P
Sbjct: 360 NGLKGDLGPHGPPGPKGEKGDTGPPG--PPALPGSLGIQGPQGPPGKEGQRGRRGKTGPP 417
Query: 120 STPLSP 125
P P
Sbjct: 418 GKPGPP 423
Score = 31.6 bits (70), Expect = 0.16
Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
+P GPP G + GP+ V GE G++G KG +
Sbjct: 508 EPGDPGPPGLIGSPGLKGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGDPGGII 567
Query: 64 APEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDP 103
P P PGP + P + P EP +G P
Sbjct: 568 GP-----PGLPGPKGEAG---PPGKSLPGEPGLDGNPGAP 599
Score = 28.5 bits (62), Expect = 1.4
Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 17/125 (13%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKG-EAVRGGRRGKKGAAT---KMAAVTA 64
GPP K + G+R + P GP +G GG K + +
Sbjct: 400 GPPGKEGQRGRRGKTGPPGKPGPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHEAGGLKG 459
Query: 65 PEAESG----PAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPS 120
+ E+G P + GP Q + P EP ++G + D + + KG P
Sbjct: 460 DKGETGLPGFPGSVGPKGQKGE--------PGEPFTKGEKGD-RGEPGVIGSQGVKGEPG 510
Query: 121 TPLSP 125
P P
Sbjct: 511 DPGPP 515
Score = 26.6 bits (57), Expect = 5.2
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 26 PSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAP--EAESG-PAAPGPSDQPSQ 82
P P GPK V E G G G G P SG P APGP P +
Sbjct: 844 PGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGVPGE 903
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 40.4 bits (93), Expect = 4e-04
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P A GPP +TGK P+GPK + + E G G +G+ G K
Sbjct: 192 PGARGPPG---DTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKGEPGVPGKKGDDGT 248
Query: 65 PEAESGPAAPGPSDQPSQELPQHEL-------PPEEPVSEGT 99
P S P PGP +P P+ E P EP GT
Sbjct: 249 P---SQPGPPGPKGEPGSMGPRGENGVDGAPGPKGEPGHRGT 287
Score = 35.8 bits (81), Expect = 0.009
Identities = 31/123 (25%), Positives = 41/123 (33%), Gaps = 12/123 (9%)
Query: 9 GPPAKAKETGKRKS---------SSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKM 59
GPP + + G+R P P G K KGE G G +G +
Sbjct: 121 GPPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGDQGQD 180
Query: 60 AAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRP 119
A P P A GP ++ P+ P P E Q + + P KG P
Sbjct: 181 GAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKG---PPGPKGEP 237
Query: 120 STP 122
P
Sbjct: 238 GVP 240
Score = 33.5 bits (75), Expect = 0.043
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 1 MSPK--PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG 54
M PK P G P + G + SQP P GPK + + +GE G G KG
Sbjct: 225 MGPKGPPGPKGEPGVPGKKGDDGTPSQPGPPGPKGEPGSMGPRGENGVDGAPGPKG 280
Score = 30.8 bits (68), Expect = 0.28
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GPP G + P G + +KG+ G G KG A +M
Sbjct: 323 PGPQGPPGPPGIPGAKGELGLPGAPGIDGEKGPKGQKGDPGEPGPAGLKGEAGEMGLSGL 382
Query: 65 PEAE--SGPAAPGPSDQPSQELPQHELPPEEPVSEG 98
P A+ G SD + L Q + P P G
Sbjct: 383 PGADGLKGEKGESASDSLQESLAQLIVEPGPPGPPG 418
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 26 PSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESGPAAPGPSDQP 80
P P G K ++ EKGE GR+G KG P P GP P
Sbjct: 483 PGPRGEKGDRSERGEKGERGVPGRKGVKG----QKGEPGPPGLDQPCPVGPDGLP 533
Score = 27.7 bits (60), Expect = 2.3
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GPP G + +P G EKG+ G +G++G + V
Sbjct: 453 PGPVGPPGLIGLPGTKGEKGRPGEPGLDGFPGPRGEKGDRSERGEKGERGVPGR-KGVKG 511
Query: 65 PEAESGPAAPGPSDQP 80
+ E GP PG DQP
Sbjct: 512 QKGEPGP--PG-LDQP 524
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 40.4 bits (93), Expect = 4e-04
Identities = 35/125 (28%), Positives = 47/125 (37%), Gaps = 8/125 (6%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G P K +TG P GP K GE G G+KG+ + +
Sbjct: 1299 PGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGL 1358
Query: 65 P---EAESGPAAPGPSDQPSQE-LPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPS 120
P P PG P +E +P P EP +G + DP + + P KG+P
Sbjct: 1359 PGFLGPRGPPGEPGEKGVPGKEGVPG---KPGEPGFKGERGDP-GIKGDKGPPGGKGQPG 1414
Query: 121 TPLSP 125
P P
Sbjct: 1415 DPGIP 1419
Score = 38.1 bits (87), Expect = 0.002
Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA--VTA 64
A G P A G P PSGP +G + G RG+KGAA + +
Sbjct: 908 AHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVG 967
Query: 65 PEAESG-PAAPGPSDQPSQELPQHELPPEEPVSEGTQ 100
P + G P PGP + P P P GT+
Sbjct: 968 PRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTK 1004
Score = 36.6 bits (83), Expect = 0.005
Identities = 36/132 (27%), Positives = 46/132 (34%), Gaps = 17/132 (12%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA--AVTA 64
A+GPP GK P P GP E+G+ R G+ G G K +
Sbjct: 1211 AAGPPGIQGSPGKE---GPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPG 1267
Query: 65 PEAESGP----------AAPGP-SDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEP 113
PE GP APGP + + LP E P + G P + P
Sbjct: 1268 PEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPT-GPQGPQGPRGPP 1326
Query: 114 LSKGRPSTPLSP 125
G P +P P
Sbjct: 1327 GKNGSPGSPGEP 1338
Score = 36.2 bits (82), Expect = 0.007
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 17/128 (13%)
Query: 5 PRASGPPAKAK--ETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGR--RGKKGAATKMA 60
P GPP K K E G R S P P G K KV GG+ +G +GA
Sbjct: 975 PGLPGPPGKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAP---G 1031
Query: 61 AVTAPEAESGP-----AAPGPSDQPSQE-LPQHELPPEEPVSEGTQHDPLSQESELEEPL 114
+P + P PGPS P + P P P +G P ++ P
Sbjct: 1032 IPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQG----PAGRDGAPGNPG 1087
Query: 115 SKGRPSTP 122
+G P P
Sbjct: 1088 ERGPPGKP 1095
Score = 33.9 bits (76), Expect = 0.033
Identities = 32/123 (26%), Positives = 40/123 (32%), Gaps = 20/123 (16%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG------ 54
M +P G P E G R P GP + +GE G RG+KG
Sbjct: 549 MRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDG 608
Query: 55 -----------AATKMAAVTAPEAESGPAAP-GPSDQPSQELPQHELPPEE--PVSEGTQ 100
+ V P+ E G P GP P + Q L E+ P G Q
Sbjct: 609 FPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQ 668
Query: 101 HDP 103
P
Sbjct: 669 GAP 671
Score = 32.7 bits (73), Expect = 0.073
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GPP GK + P P G K + + E G + G RG+ G +A
Sbjct: 740 PGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIG-EQGLAGRPG 798
Query: 65 PEAESG-PAAPG 75
+ E+G P APG
Sbjct: 799 EKGEAGLPGAPG 810
Score = 32.3 bits (72), Expect = 0.095
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
+P PR P + G++ P G + + ++ +G G +G++GA A
Sbjct: 858 TPHPRM---PGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGA 914
Query: 62 VTAPEAESGPAAPGPSDQP 80
P A APGPS P
Sbjct: 915 AGNPGAPGHVGAPGPSGPP 933
Score = 32.0 bits (71), Expect = 0.12
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
+P SG P + G+ S P GP+ + EKG + G GK G
Sbjct: 1337 EPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERG 1396
Query: 64 APEAESGPAAPGPSDQPSQE-LPQHE 88
P + PG QP +P H+
Sbjct: 1397 DPGIKGDKGPPGGKGQPGDPGIPGHK 1422
Score = 31.2 bits (69), Expect = 0.21
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGA--ATKMAA 61
K G P E GK P P G + G++ G RG+ GA
Sbjct: 1244 KEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEG 1303
Query: 62 VTAPEAESGPAAPGPSDQPSQELPQHELP--PEEPVSEGT 99
+ + ++GP P P ++ P P EP GT
Sbjct: 1304 LPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGT 1343
Score = 31.2 bits (69), Expect = 0.21
Identities = 37/133 (27%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G P K E G + P G K KG+ G G KG M
Sbjct: 1377 PGKEGVPGKPGEPGFKGERGDPGIKGDKGPP---GGKGQPGDPGIPGHKGHTGLMGPQGL 1433
Query: 65 PEAESGPAAP-GPSDQPSQELPQHELPPEEPVSEGTQHD-----------PLSQESELEE 112
P E+GP P GP QP + E P E + Q + L+Q
Sbjct: 1434 P-GENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYM 1492
Query: 113 PLSKGRPSTPLSP 125
S+GRP P P
Sbjct: 1493 KSSQGRPGPPGPP 1505
Score = 30.8 bits (68), Expect = 0.28
Identities = 35/141 (24%), Positives = 50/141 (35%), Gaps = 27/141 (19%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGR---------------RGKK 53
GPP E G+R P G + + + E+G A R G RG+K
Sbjct: 762 GPPGTKGEPGERGEDGLPGKPGLRGE---IGEQGLAGRPGEKGEAGLPGAPGFPGVRGEK 818
Query: 54 GAATKMAAVTAP--------EAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDP-L 104
G + + P + E+GPA P + H P E +G + DP L
Sbjct: 819 GDQGEKGELGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGL 878
Query: 105 SQESELEEPLSKGRPSTPLSP 125
E L+ + P P P
Sbjct: 879 PGEPGLQGRPGELGPQGPTGP 899
Score = 30.0 bits (66), Expect = 0.47
Identities = 30/123 (24%), Positives = 39/123 (31%), Gaps = 5/123 (4%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
KP G K E G P +GP+ + GE + G +G G M
Sbjct: 1139 KPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPG 1198
Query: 64 APEAESGPAAPGPSDQPS-QELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P G + P Q P E PP G P + E + G+P P
Sbjct: 1199 NPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRD----GKPGPP 1254
Query: 123 LSP 125
P
Sbjct: 1255 GEP 1257
Score = 30.0 bits (66), Expect = 0.47
Identities = 36/127 (28%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 3 PKPRA-SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG--AATKM 59
P P+ SG P E GK +P P G + K E G G RG G T
Sbjct: 1227 PGPQGPSGLPGIPGEEGKEGRDGKPGPPG---EPGKAGEPGLPGPEGARGPPGFKGHTGD 1283
Query: 60 AAVTAPEAESGP-AAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGR 118
+ P ESG PG P ++ P+ P +G + P S P S G
Sbjct: 1284 SGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGP--QGPRGPPGKNGS----PGSPGE 1337
Query: 119 PSTPLSP 125
P +P
Sbjct: 1338 PGPSGTP 1344
Score = 29.6 bits (65), Expect = 0.62
Identities = 26/99 (26%), Positives = 33/99 (33%), Gaps = 5/99 (5%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P SGPP G R P P GP + GE G+ G +
Sbjct: 1050 PGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLL 1109
Query: 65 PEAESGPAAPGPSDQPSQELPQHELP---PEEPVSEGTQ 100
+ PGP P LP + P +P EGT+
Sbjct: 1110 AKDVCNDCPPGPPGLPG--LPGFKGDKGVPGKPGREGTE 1146
Score = 29.3 bits (64), Expect = 0.81
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTT---KVAEKGEAVRGGRRGKKGAATKMAAVT 63
A PPA K S +P P GP K + GE R G+ G +G + +
Sbjct: 1485 AQMPPAYMKS-----SQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKG 1539
Query: 64 APEAESGPAAPGPSDQPSQELPQHELPPEEP 94
A+ P APG + P P EP
Sbjct: 1540 ERGAKGDPGAPGVGLRGEMGPPGIPGQPGEP 1570
Score = 26.6 bits (57), Expect = 5.2
Identities = 29/120 (24%), Positives = 35/120 (29%), Gaps = 12/120 (10%)
Query: 18 GKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKG-----AATKMAAVTAPEAESG-P 71
G R P P G + G G RGKKG + + P G P
Sbjct: 663 GPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVP 722
Query: 72 AAPGPSDQPSQE----LPQHELP--PEEPVSEGTQHDPLSQESELEEPLSKGRPSTPLSP 125
PGP P P P P P + + P EP +G P P
Sbjct: 723 GPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKP 782
Score = 26.6 bits (57), Expect = 5.2
Identities = 31/118 (26%), Positives = 35/118 (29%), Gaps = 12/118 (10%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P +GP E G Q G + G G G GAA +
Sbjct: 1161 PGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGS 1220
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P E P GPS P +P EE EG P EP G P P
Sbjct: 1221 PGKEGPPGPQGPSGLPG-------IPGEEG-KEGRDGKP----GPPGEPGKAGEPGLP 1266
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 39.7 bits (91), Expect = 6e-04
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 5 PRASGPPAKAKETGKRKSSSQPS------PSGPKKKTTKVAEKGEAVRGGRRGKKGAATK 58
P GPP + G P P GPK +KG+A GR G G K
Sbjct: 1334 PGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGK 1393
Query: 59 MAAV-----TAPEAESG-PAAPGPSDQP 80
++ P E G P APGPS P
Sbjct: 1394 SGSMGPVGPPGPAGERGHPGAPGPSGSP 1421
Score = 35.8 bits (81), Expect = 0.009
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P +GPP G + + P GPK K G R G G+ GA
Sbjct: 1230 PGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGA-------MG 1282
Query: 65 PEAESGP----AAPGPSDQP 80
P+ GP PGP QP
Sbjct: 1283 PQGRPGPPGHVGPPGPPGQP 1302
Score = 35.4 bits (80), Expect = 0.011
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 18 GKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATK---MAAVTAPEAESGPAAP 74
GK P P+GP KG+ G G KG K + P AE P A
Sbjct: 1222 GKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAM 1281
Query: 75 GPSDQPSQELPQHELPPEEPVSEG 98
GP +P P H PP P G
Sbjct: 1282 GPQGRPGP--PGHVGPPGPPGQPG 1303
Score = 33.1 bits (74), Expect = 0.056
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 3 PKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAE-----KGEAVRGGRRGKKGAAT 57
P SGPP + + G+ P GP+ + + E +G+ + G G G
Sbjct: 838 PGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWM 897
Query: 58 KMAAVTAPEAESG-PAAPGPSDQPS-QELPQHELPPEEP 94
+ P+ G P PGP P Q +P + P +P
Sbjct: 898 GSSWQPGPQGPPGIPGPPGPPGVPGLQGVPGNNGLPGQP 936
Score = 31.6 bits (70), Expect = 0.16
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAV-- 62
P GPP P P G K + ++G + G+ G KG V
Sbjct: 452 PGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGDPCEVCP 511
Query: 63 TAPEAESG----PAAPGPSDQPSQELP 85
T PE P PGP +P +P
Sbjct: 512 TLPEGFQNFVGLPGKPGPKGEPGDPVP 538
Score = 30.8 bits (68), Expect = 0.28
Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP G P P+GP+ + GE G +G+ G P
Sbjct: 1120 GPP------GSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKV 1173
Query: 69 SGPAAPGPSDQPSQE-------LPQHELPPEEPVSEG 98
P PGP + E LP PP P +G
Sbjct: 1174 GSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQG 1210
Score = 30.8 bits (68), Expect = 0.28
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRG--GRRGKKGAATKMAAV 62
P ++G P E G +P P G + G A G +G +GA +
Sbjct: 1266 PGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLA 1325
Query: 63 TAPEAESGPAAPGPSDQPSQE 83
P P PGP +P +
Sbjct: 1326 GLPGQPGPPGHPGPPGEPGTD 1346
Score = 30.4 bits (67), Expect = 0.36
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Query: 3 PKPRASGPPAKAKETGKRKSSSQ------PSPSGPKKKTTKVAEKGE-AVRG--GRRGKK 53
P P G P K + G+R Q P G T + GE V+G G +G+K
Sbjct: 661 PGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEK 720
Query: 54 G---AATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDP 103
G A T + P PGP + E P +P G Q P
Sbjct: 721 GDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPP 773
Score = 30.0 bits (66), Expect = 0.47
Identities = 19/70 (27%), Positives = 25/70 (35%)
Query: 17 TGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESGPAAPGP 76
TG +P P G G G RG G+A + P +E P PGP
Sbjct: 1074 TGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGP 1133
Query: 77 SDQPSQELPQ 86
+ + PQ
Sbjct: 1134 AGPRGERGPQ 1143
Score = 29.6 bits (65), Expect = 0.62
Identities = 35/126 (27%), Positives = 44/126 (34%), Gaps = 22/126 (17%)
Query: 5 PRASGPPAKAKETGK------RKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATK 58
P GPP + G+ R S P P GP V G G RG G
Sbjct: 1020 PGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTG---- 1075
Query: 59 MAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ--HDPLSQESELEEPLSK 116
+T + E PGP QP P PP P +G + ++ E P S+
Sbjct: 1076 ---LTGDKGE-----PGPPGQPG--YPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSE 1125
Query: 117 GRPSTP 122
G P P
Sbjct: 1126 GLPGPP 1131
Score = 29.3 bits (64), Expect = 0.81
Identities = 23/102 (22%), Positives = 37/102 (36%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
+P A GP + E+G S P +G K + + + G G+ G+ G ++
Sbjct: 368 APLQCAEGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICV 427
Query: 62 VTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDP 103
+ + P GP + P P GT DP
Sbjct: 428 IGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDP 469
Score = 28.5 bits (62), Expect = 1.4
Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+G + E G S P P GP +GE G G+KG P
Sbjct: 1110 TGSAGEKGEPGPPGSEGLPGPPGP------AGPRGERGPQGNSGEKGDQGFQGQPGFPGP 1163
Query: 68 ESGPAAPGPSDQPSQELPQHE 88
P PG P PQ E
Sbjct: 1164 PGPPGFPGKVGSPGPPGPQAE 1184
Score = 26.2 bits (56), Expect = 6.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 18 GKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAA----------TKMAAVTAPEA 67
G R S+ +PSGPK E+G G +G+KGA + P+
Sbjct: 322 GARDSNVTLAPSGPKGGK---GERGLPGPPGSKGEKGARGNDCVRISPDAPLQCAEGPKG 378
Query: 68 ESGPA-APGPSDQP 80
E G + A GPS P
Sbjct: 379 EKGESGALGPSGLP 392
Score = 26.2 bits (56), Expect = 6.8
Identities = 32/127 (25%), Positives = 43/127 (33%), Gaps = 15/127 (11%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAA--TKMAAV 62
P GPP G S P G + T +KGE G+ G GA + +
Sbjct: 1047 PGPIGPPGFPGAVG---SPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGI 1103
Query: 63 TAPEAESGPAA----PGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGR 118
+G A PGP S+ LP P P + P E + +G+
Sbjct: 1104 KGERGYTGSAGEKGEPGPPG--SEGLP----GPPGPAGPRGERGPQGNSGEKGDQGFQGQ 1157
Query: 119 PSTPLSP 125
P P P
Sbjct: 1158 PGFPGPP 1164
Score = 26.2 bits (56), Expect = 6.8
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 17 TGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESGPAAPGP 76
TG+R + P GP E G G GK+G K P + P A G
Sbjct: 1319 TGERGLAGLPGQPGPPGHPGPPGEPGT---DGAAGKEGPPGKQGFYGPPGPKGDPGAAGQ 1375
Query: 77 SDQPSQE 83
Q ++
Sbjct: 1376 KGQAGEK 1382
Score = 26.2 bits (56), Expect = 6.8
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA 60
M+ P GPP K G+ + P G + + G G +G+KG
Sbjct: 1468 MAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGI 1527
Query: 61 AVTAPEAESG-PAAPGPSDQP 80
A E+G P PGP P
Sbjct: 1528 A-----GENGLPGPPGPQGPP 1543
Score = 25.8 bits (55), Expect = 8.9
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 9 GPPAKAKETGKRKSSSQPS---PSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAP 65
GP + E G + QP P GP KV G +G +G +P
Sbjct: 1141 GPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSP 1200
Query: 66 EAESGPAAPGPS 77
P GP+
Sbjct: 1201 GPPGPPGIQGPA 1212
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.3 bits (90), Expect = 8e-04
Identities = 33/118 (27%), Positives = 42/118 (35%), Gaps = 14/118 (11%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP A G + P P G K + G A G RG G P +
Sbjct: 837 GPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGP---------PGSN 887
Query: 69 SGPAAPGPSDQPSQELPQ----HELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P PGPS P ++ P + P P G + D Q E P ++G P P
Sbjct: 888 GNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGD-AGQPGEKGSPGAQGPPGAP 944
Score = 38.9 bits (89), Expect = 0.001
Identities = 36/122 (29%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 7 ASGPPAKAKETGK---RKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
A GPP A G R + +P +G K + E+GEA G G KG K +
Sbjct: 412 ARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPG 471
Query: 64 APEAESGPAAPGPSDQPSQELP--QHELPPEE-PVSEGTQHDPLSQESELEEPLSKGRPS 120
P A P A G P P + +P E+ P E P EP G P
Sbjct: 472 EPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPG 531
Query: 121 TP 122
P
Sbjct: 532 GP 533
Score = 37.7 bits (86), Expect = 0.002
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
S P GPP A TG + P SGPK + EKG G G G +A
Sbjct: 896 SGSPGKDGPPGPAGNTG---APGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLG-IAG 951
Query: 62 VTAPEAESGPAA-PGPSDQPSQE 83
+T +GP PGP P +
Sbjct: 952 ITGARGLAGPPGMPGPRGSPGPQ 974
Score = 36.2 bits (82), Expect = 0.007
Identities = 29/112 (25%), Positives = 38/112 (33%), Gaps = 13/112 (11%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GPP GK + P+GP +G G RG KG + A
Sbjct: 1046 PGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGI 1105
Query: 65 ------PEAESGPAAPGPSDQ------PSQELPQHELPPE-EPVSEGTQHDP 103
P P +PGP+ Q P P+ + P P +GT P
Sbjct: 1106 KGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHP 1157
Score = 35.8 bits (81), Expect = 0.009
Identities = 36/119 (30%), Positives = 40/119 (33%), Gaps = 24/119 (20%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
+P A+G P A E G P GP EKG A G RG G A A
Sbjct: 472 EPGANGLPGAAGERG------APGFRGPAGPNGIPGEKGPA---GERGAPGPAGPRGAAG 522
Query: 64 APEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P + P PG P P P S+G P SQ GRP P
Sbjct: 523 EPGRDGVPGGPGMRGMPGS--------PGGPGSDGKPGPPGSQG-------ESGRPGPP 566
Score = 35.4 bits (80), Expect = 0.011
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GPP A G R + P P G K G A G +G G + +
Sbjct: 680 PGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGS-PG 738
Query: 65 PEAESG-PAAPGPSDQPSQELPQHELPPEEP 94
P+ + G P PG P ++ P+ P P
Sbjct: 739 PKGDKGEPGGPGADGVPGKDGPRGPTGPIGP 769
Score = 35.4 bits (80), Expect = 0.011
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGR------RGKKGAATK 58
P A+G P G S+ P P GP K G A G G KG A +
Sbjct: 869 PGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQ 928
Query: 59 MAAVTAPEAESGPAAPGP 76
+P A+ P APGP
Sbjct: 929 PGEKGSPGAQGPPGAPGP 946
Score = 34.7 bits (78), Expect = 0.019
Identities = 36/121 (29%), Positives = 40/121 (33%), Gaps = 15/121 (12%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GPP E GK +P P G KG+A G RG G A A
Sbjct: 644 PGTGGPPG---ENGK---PGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLA------GA 691
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTPLS 124
P G PGP P PP + G Q P + L P KG P
Sbjct: 692 PGLRGGAGPPGPEGGKGAAGPPG--PPGAAGTPGLQGMP-GERGGLGSPGPKGDKGEPGG 748
Query: 125 P 125
P
Sbjct: 749 P 749
Score = 34.3 bits (77), Expect = 0.025
Identities = 24/90 (26%), Positives = 30/90 (33%), Gaps = 15/90 (16%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP E+G+ P PSGP+ + + G G GK G
Sbjct: 552 GPPGSQGESGR---PGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGE------------R 596
Query: 69 SGPAAPGPSDQPSQELPQHELPPEEPVSEG 98
GP PGP P + P P G
Sbjct: 597 GGPGGPGPQGPPGKNGETGPQGPPGPTGPG 626
Score = 33.9 bits (76), Expect = 0.033
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GPP K ETG P GP T +KG+ G +G +G +
Sbjct: 602 PGPQGPPGKNGETG---------PQGPPGPTGPGGDKGDTGPPGPQGLQG----LPGTGG 648
Query: 65 PEAESG-PAAPGP 76
P E+G P PGP
Sbjct: 649 PPGENGKPGEPGP 661
Score = 32.3 bits (72), Expect = 0.095
Identities = 31/119 (26%), Positives = 37/119 (31%), Gaps = 8/119 (6%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P A GP A TG R + P GP+ KGE+ + G G G
Sbjct: 941 PGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGL 1000
Query: 65 PEAESGPAAPGPSDQP-SQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P PG P S LP + P G P P + G P P
Sbjct: 1001 PGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSP-------GAPGAPGHPGPP 1052
Score = 31.6 bits (70), Expect = 0.16
Identities = 37/145 (25%), Positives = 43/145 (29%), Gaps = 25/145 (17%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSP---------------SGPKKKTTKVAEKGEAV 45
M P G K G + S +P P GPK + GE
Sbjct: 538 MPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERG 597
Query: 46 RGGRRGKKGAATKMAAVTAPEAESGPAAPG--------PSDQPSQELPQHELPPEEPVSE 97
G G +G K T P+ GP PG P Q Q LP PP E
Sbjct: 598 GPGGPGPQGPPGKNGE-TGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKP 656
Query: 98 GTQHDPLSQESELEEPLSKGRPSTP 122
G + P P KG P
Sbjct: 657 G-EPGPKGDAGAPGAPGGKGDAGAP 680
Score = 31.2 bits (69), Expect = 0.21
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GP E G + P GP+ T + G A + G +G+ G A + + P
Sbjct: 738 GPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGE-GGAPGLPGIAGPRGS 796
Query: 69 SG-------------PAAPGPSDQP 80
G P APG + +P
Sbjct: 797 PGERGETGPPGPAGFPGAPGQNGEP 821
Score = 30.8 bits (68), Expect = 0.28
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GPP E G+ S P P G + + GE+ R GR G++G +
Sbjct: 197 PGYQGPPG---EPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERG-------LPG 246
Query: 65 PEAESGPAA-PG 75
P GPA PG
Sbjct: 247 PPGIKGPAGIPG 258
Score = 30.8 bits (68), Expect = 0.28
Identities = 33/119 (27%), Positives = 40/119 (33%), Gaps = 20/119 (16%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P A+G P G+R P P G K E G G GK G
Sbjct: 716 PGAAGTPGLQGMPGERGGLGSPGPKGDK------GEPGGPGADGVPGKDG---------- 759
Query: 65 PEAESGP-AAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P +GP PGP+ QP + P P G + P + E P G P P
Sbjct: 760 PRGPTGPIGPPGPAGQPGDK--GEGGAPGLPGIAGPRGSP-GERGETGPPGPAGFPGAP 815
Score = 29.6 bits (65), Expect = 0.62
Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 4/121 (3%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G + G + P P GP K ++GE+ G G G A A
Sbjct: 1028 PGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA-PG 1086
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTPLS 124
P+ G ++ + + H P P + G+ P Q+ + P G P P+
Sbjct: 1087 PQGPRGDKGE-TGERGAAGIKGHRGFPGNPGAPGSP-GPAGQQGAIGSPGPAG-PRGPVG 1143
Query: 125 P 125
P
Sbjct: 1144 P 1144
Score = 29.3 bits (64), Expect = 0.81
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGE----AVRG--GRRGKKGAATK 58
P ++G P + E G + + P GP KGE + G G G +G
Sbjct: 359 PGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGP 418
Query: 59 MAAVTAPEAESGPAAPGPSDQPSQELPQHE 88
A AP G PG + + P+ E
Sbjct: 419 AGANGAPGLRGGAGEPGKNGAKGEPGPRGE 448
Score = 28.5 bits (62), Expect = 1.4
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEA 67
+G P E G + P P GP +G GR G GAA A +
Sbjct: 278 TGAPGLKGENGLPGENGAPGPMGP---------RGAPGERGRPGLPGAAGARGNDGARGS 328
Query: 68 ESGPAAPGP 76
+ P PGP
Sbjct: 329 DGQPGPPGP 337
Score = 28.1 bits (61), Expect = 1.8
Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKT---TKVAEKGEAVRGGRRGKKGAATKMA 60
+P G G R S QP P GP KGE G G GA +
Sbjct: 310 RPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRG 369
Query: 61 AVTAPEAESG----PAAPGPSDQP 80
P+ +G P PG + P
Sbjct: 370 E-PGPQGHAGAQGPPGPPGINGSP 392
Score = 28.1 bits (61), Expect = 1.8
Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 5 PRASGPPAKAKETGKRKSSSQP-------SPSGPKK--KTTKVAEKGEAVRGGRRGKKGA 55
P +GP A E G+ P SP GP K +GE+ R G G G
Sbjct: 512 PGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGP 571
Query: 56 ATKMAAVTAPEAESGPAAPGPSDQ---PSQELPQHELPPEEPVSEGTQHDP 103
+ + P + APG + + P PQ PP + G Q P
Sbjct: 572 RGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQG--PPGKNGETGPQGPP 620
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKG-EAVRG-----------GRRGK 52
P G P G++ + P P+GP+ G + G G RG+
Sbjct: 1112 PGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGE 1171
Query: 53 KGAATKMAAVTAPEAESGPAAPGP 76
+G+ P P APGP
Sbjct: 1172 RGSEGSPGHPGQPGPPGPPGAPGP 1195
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/81 (24%), Positives = 26/81 (32%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P A G P A + G S P GP + + G + G G G +
Sbjct: 1115 PGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGS 1174
Query: 65 PEAESGPAAPGPSDQPSQELP 85
+ P PGP P P
Sbjct: 1175 EGSPGHPGQPGPPGPPGAPGP 1195
Score = 27.7 bits (60), Expect = 2.3
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPE 66
A G P A G + P GP + GE G +G++GA + P
Sbjct: 784 APGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEP---GGKGERGAPGEKGEGGPPG 840
Query: 67 AESGPAAPGPSDQPSQE 83
P GP+ P +
Sbjct: 841 VAGPPGGSGPAGPPGPQ 857
Score = 26.6 bits (57), Expect = 5.2
Identities = 18/68 (26%), Positives = 21/68 (30%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
GPP +G S P GP + + G G G G A K P
Sbjct: 180 GPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRP 239
Query: 69 SGPAAPGP 76
PGP
Sbjct: 240 GERGLPGP 247
Score = 25.8 bits (55), Expect = 8.9
Identities = 19/79 (24%), Positives = 25/79 (31%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVT 63
K SG P + E G P+G +G R G +G+ GA
Sbjct: 229 KDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENG 288
Query: 64 APEAESGPAAPGPSDQPSQ 82
P P GP P +
Sbjct: 289 LPGENGAPGPMGPRGAPGE 307
Score = 25.8 bits (55), Expect = 8.9
Identities = 24/89 (26%), Positives = 28/89 (31%), Gaps = 21/89 (23%)
Query: 9 GPPAKAKETGKRKSSSQP------------------SPSGPKKKTTKVAEKGEAVRGGRR 50
GPP A + G + P P GP + GE G R
Sbjct: 768 GPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGER 827
Query: 51 GKKGAATK--MAAVTAPEAESGPAA-PGP 76
G G + V P SGPA PGP
Sbjct: 828 GAPGEKGEGGPPGVAGPPGGSGPAGPPGP 856
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 39.3 bits (90), Expect = 8e-04
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 3 PKPRASGP---PAKAKETGKRKSSSQPS-----PSG---PKKKTTKVAEKGEAVRGGRRG 51
P P+ GP P + T K SS QP P G P + T+ + A +R
Sbjct: 218 PIPKQQGPGRDPLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRD 277
Query: 52 KKGAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPL---SQES 108
TK A + E+ P+ P PS P Q+ + P ++P E +Q P +Q S
Sbjct: 278 ASRPQTKQADIVRGESVK-PSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPS 336
Query: 109 ELEEPLSK--GRPSTPLSP 125
L +PL++ G P+ P
Sbjct: 337 GLTKPLAQQPGTVKPPVQP 355
Score = 35.0 bits (79), Expect = 0.015
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 3 PKPRASGPPAKAKETGKRKSSSQ-PSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
P +A A++TG K SQ P P+ P + A+ G K + + +
Sbjct: 450 PAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSA---KPPSQQPGS 506
Query: 62 VTAPEAESGPAAPGPSDQPSQELPQHELPPEEP-VSEGTQHDPLSQESELEEPLSKGRPS 120
P + GPA P P S + P + +P + + P +Q+S +P+S+
Sbjct: 507 TKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQS--TKPVSQTGSG 564
Query: 121 TPLSP 125
PL P
Sbjct: 565 KPLQP 569
Score = 31.6 bits (70), Expect = 0.16
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 11/127 (8%)
Query: 2 SPKPRASGP--PAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKM 59
+PKP A P + AK G K+ Q GP K + A G+ K +
Sbjct: 417 TPKPLAQQPGLQSPAKAPGPTKTPVQQP--GPGKIPAQQAGPGKTSAQQTGPTKPPSQLP 474
Query: 60 AAVTAPEAESGPAAPGPSD-----QPSQELPQHELPPEEP-VSEGTQHDPLSQESELEEP 113
P + GPA P P PSQ+ + PP++P ++ + P S + ++P
Sbjct: 475 GPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQP 534
Query: 114 LSKGRPS 120
+PS
Sbjct: 535 -GSAKPS 540
Score = 25.8 bits (55), Expect = 8.9
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 60 AAVTAPEAESGPA-----APGPSDQPSQELPQH---ELPPEEPVSEGTQHDPLSQESELE 111
A P ++SGP AP PS P+ + P + PP S + + + +E
Sbjct: 949 AGQPGPHSQSGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEKL 1008
Query: 112 EPLSKGRPS 120
EP ++ P+
Sbjct: 1009 EPKAEQAPT 1017
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 39.3 bits (90), Expect = 8e-04
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 3 PKPRASGP---PAKAKETGKRKSSSQPS-----PSG---PKKKTTKVAEKGEAVRGGRRG 51
P P+ GP P + T K SS QP P G P + T+ + A +R
Sbjct: 218 PIPKQQGPGRDPLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRD 277
Query: 52 KKGAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPL---SQES 108
TK A + E+ P+ P PS P Q+ + P ++P E +Q P +Q S
Sbjct: 278 ASRPQTKQADIVRGESVK-PSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPS 336
Query: 109 ELEEPLSK--GRPSTPLSP 125
L +PL++ G P+ P
Sbjct: 337 GLTKPLAQQPGTVKPPVQP 355
Score = 35.0 bits (79), Expect = 0.015
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 3 PKPRASGPPAKAKETGKRKSSSQ-PSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
P +A A++TG K SQ P P+ P + A+ G K + + +
Sbjct: 450 PAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSA---KPPSQQPGS 506
Query: 62 VTAPEAESGPAAPGPSDQPSQELPQHELPPEEP-VSEGTQHDPLSQESELEEPLSKGRPS 120
P + GPA P P S + P + +P + + P +Q+S +P+S+
Sbjct: 507 TKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQS--TKPVSQTGSG 564
Query: 121 TPLSP 125
PL P
Sbjct: 565 KPLQP 569
Score = 31.6 bits (70), Expect = 0.16
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 11/127 (8%)
Query: 2 SPKPRASGP--PAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKM 59
+PKP A P + AK G K+ Q GP K + A G+ K +
Sbjct: 417 TPKPLAQQPGLQSPAKAPGPTKTPVQQP--GPGKIPAQQAGPGKTSAQQTGPTKPPSQLP 474
Query: 60 AAVTAPEAESGPAAPGPSD-----QPSQELPQHELPPEEP-VSEGTQHDPLSQESELEEP 113
P + GPA P P PSQ+ + PP++P ++ + P S + ++P
Sbjct: 475 GPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQP 534
Query: 114 LSKGRPS 120
+PS
Sbjct: 535 -GSAKPS 540
Score = 25.8 bits (55), Expect = 8.9
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 60 AAVTAPEAESGPA-----APGPSDQPSQELPQH---ELPPEEPVSEGTQHDPLSQESELE 111
A P ++SGP AP PS P+ + P + PP S + + + +E
Sbjct: 949 AGQPGPHSQSGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEKL 1008
Query: 112 EPLSKGRPS 120
EP ++ P+
Sbjct: 1009 EPKAEQAPT 1017
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 38.9 bits (89), Expect = 0.001
Identities = 37/131 (28%), Positives = 44/131 (33%), Gaps = 9/131 (6%)
Query: 3 PKPRA-SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGG------RRGKKGA 55
P PR SG P G P G K + + E G GG RG+KG
Sbjct: 1254 PGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGE 1313
Query: 56 ATKMAAVTAPEAESGPAAPGPSDQPSQ-ELPQHELPPEEPVSEGTQHDPLSQESELEEPL 114
+ A P + P GP P P PP EP G Q P + + EP
Sbjct: 1314 SGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAG-QDGPPGDKGDDGEPG 1372
Query: 115 SKGRPSTPLSP 125
G P P
Sbjct: 1373 QTGSPGPTGEP 1383
Score = 38.1 bits (87), Expect = 0.002
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P G + +TG + +P PSGP K G A GR+G+KGA + A +
Sbjct: 1362 PGDKGDDGEPGQTGSPGPTGEPGPSGPPGKR---GPPGPAGPEGRQGEKGAKGE-AGLEG 1417
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSE 97
P ++GP GP P + P PV E
Sbjct: 1418 PPGKTGPI--GPQGAPGKPGPDGLRGIPGPVGE 1448
Score = 37.4 bits (85), Expect = 0.003
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA--- 61
P +G P + GKR P P+GP+ + + KGEA G GK G A
Sbjct: 1377 PGPTGEPGPSGPPGKR---GPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGK 1433
Query: 62 --------VTAPEAESG-PAAPGPSDQP 80
+ P E G P +PGP P
Sbjct: 1434 PGPDGLRGIPGPVGEQGLPGSPGPDGPP 1461
Score = 36.6 bits (83), Expect = 0.005
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GP A G + P P+GP + +KGE G++G KG +
Sbjct: 1122 PGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGP-PG 1180
Query: 65 PEAESGP-AAPGPSDQPSQELPQ 86
P GP PGPS + P+
Sbjct: 1181 PTGPQGPIGQPGPSGADGEPGPR 1203
Score = 35.0 bits (79), Expect = 0.015
Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 7 ASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPE 66
A+GPP G P P G E G A + G G KG +
Sbjct: 1319 AAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKG----------DD 1368
Query: 67 AESG-PAAPGPSDQPSQELPQHELPPEEPVS-EGTQHDPLSQ-ESELEEPLSKGRPSTP 122
E G +PGP+ +P P + P P EG Q + ++ E+ LE P K P P
Sbjct: 1369 GEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGP 1427
Score = 34.7 bits (78), Expect = 0.019
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 18 GKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESGPAAPGPS 77
G++ P PSGP E+G+ G RG G + P PG +
Sbjct: 640 GEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVT 699
Query: 78 DQPSQELPQHELPPE-EPVSEGTQHDPLSQ-----ESELEEPLSK---GRPSTPLSP 125
Q P+ + P+ EP G Q +P +Q + + P K G+P P P
Sbjct: 700 GMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMP 756
Score = 34.3 bits (77), Expect = 0.025
Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 8/115 (6%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
G P E G R + +P P G + T E+G G+ G KG + P E
Sbjct: 889 GFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGG-DGPAGPPGE 947
Query: 69 SGPAAP-GPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
GP P GP+ P + PP P +G P Q E G P P
Sbjct: 948 RGPNGPQGPTG-----FPGPKGPPGPPGKDGLPGHP-GQRGETGFQGKTGPPGPP 996
Score = 34.3 bits (77), Expect = 0.025
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKK------TTKVAEKGEAVRGGRRGKKGAATKMAAV 62
GPP + E G R SGPK + + + G G G KGA +
Sbjct: 1492 GPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGS-SGP 1550
Query: 63 TAPEAESG----PAAPGPSDQPSQELP 85
T P+ E+G P PGP + Q LP
Sbjct: 1551 TGPKGEAGHPGPPGPPGPPGEVIQPLP 1577
Score = 33.1 bits (74), Expect = 0.056
Identities = 32/120 (26%), Positives = 39/120 (32%), Gaps = 9/120 (7%)
Query: 3 PKPRA----SGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATK 58
P PR GPP G QP GPK E G + G G +G
Sbjct: 678 PGPRGLLGPKGPPGPPGPPGVTGMDGQP---GPKGNVGPQGEPGPPGQQGNPGAQGLPGP 734
Query: 59 MAAVTAPEAESGP-AAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKG 117
A+ P E GP PG P + P E P E P + + P +G
Sbjct: 735 QGAI-GPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRG 793
Score = 33.1 bits (74), Expect = 0.056
Identities = 30/121 (24%), Positives = 38/121 (31%), Gaps = 3/121 (2%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P A GPP + G P GP+ +G G RG KG +
Sbjct: 756 PGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGF 815
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTPLS 124
P + G + P+ E PE P G P L P KG+ P
Sbjct: 816 PGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRG---GPNGDPGPLGPPGEKGKLGVPGL 872
Query: 125 P 125
P
Sbjct: 873 P 873
Score = 32.7 bits (73), Expect = 0.073
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 3 PKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAV 62
P PR P K G+ + P P GP + K+ G GR+G KG+
Sbjct: 834 PGPRGEDGPEGPK--GRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFP 891
Query: 63 TAPEAESG---PAAPGPSDQPSQELPQHELPP 91
A + G P PGP Q P+ E P
Sbjct: 892 GANGEKGGRGTPGKPGPRGQRGPTGPRGERGP 923
Score = 32.3 bits (72), Expect = 0.095
Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 8 SGPPAKAKETGKRKSSSQPSPSGPKKKTTK---VAEKGEAVRGGRRGKKGAATKMAAV-- 62
+GPP + G + + P P GP K G+ G +GK G V
Sbjct: 942 AGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGP 1001
Query: 63 TAPEAESGPAA----PGPSDQPSQELPQHELPPEEPVSEGTQHDP 103
P E+GP PGP P + + P EGT+ DP
Sbjct: 1002 QGPTGETGPMGERGHPGPPGPPGE-----QGLPGLAGKEGTKGDP 1041
Score = 32.0 bits (71), Expect = 0.12
Identities = 30/119 (25%), Positives = 40/119 (33%), Gaps = 2/119 (1%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P SGPP + G+R + P G + G G G G T M
Sbjct: 648 PGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPG-VTGMDGQPG 706
Query: 65 PEAESGP-AAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPSTP 122
P+ GP PGP Q Q P+ + + PL + P + G P P
Sbjct: 707 PKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHP 765
Score = 31.2 bits (69), Expect = 0.21
Identities = 25/99 (25%), Positives = 32/99 (32%), Gaps = 18/99 (18%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKK------TTKVAEKGEAVRGGRRGK------ 52
P GP ETG P P GP + K KG+ G GK
Sbjct: 996 PGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGL 1055
Query: 53 ------KGAATKMAAVTAPEAESGPAAPGPSDQPSQELP 85
+G + A+ E P PGP+ P + P
Sbjct: 1056 RGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGP 1094
Score = 30.0 bits (66), Expect = 0.47
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 9 GPPAKAKETGKRKSSSQPSP------SGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAV 62
G P + ETG + + P P GP +T + E+G G G++G + +
Sbjct: 976 GHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQG----LPGL 1031
Query: 63 TAPEAESGPAAPGPSDQPSQELP 85
E G PGP+ P ++ P
Sbjct: 1032 AGKEGTKGD--PGPAGLPGKDGP 1052
Score = 30.0 bits (66), Expect = 0.47
Identities = 22/82 (26%), Positives = 26/82 (31%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P GPP G R G K G A G RG GAA +
Sbjct: 1047 PGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGR 1106
Query: 65 PEAESGPAAPGPSDQPSQELPQ 86
P + P G P ++ PQ
Sbjct: 1107 PGPQGPPGPAGEKGAPGEKGPQ 1128
Score = 29.3 bits (64), Expect = 0.81
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 16/126 (12%)
Query: 5 PRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTA 64
P +G P + G P GP+ EKG G +G +G A + +
Sbjct: 1083 PGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAP---GEKGPQGPAGR-DGLQG 1138
Query: 65 PEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHD--------PLSQESELEEPLSK 116
P GPA GP P ++ + E+ EP +G++ D P + + +P
Sbjct: 1139 PVGLPGPA--GPVGPPGEDGDKGEI--GEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPS 1194
Query: 117 GRPSTP 122
G P
Sbjct: 1195 GADGEP 1200
Score = 28.9 bits (63), Expect = 1.1
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 21/95 (22%)
Query: 1 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGA--ATK 58
++ +P GPP G +P GP+ G A + GRRG+ G+ A
Sbjct: 566 LTGRPGPVGPPGSGGLKG------EPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARG 619
Query: 59 MAAVTAPEAESG-------------PAAPGPSDQP 80
M T P+ + G PGPS P
Sbjct: 620 MPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPP 654
Score = 28.1 bits (61), Expect = 1.8
Identities = 39/136 (28%), Positives = 48/136 (35%), Gaps = 38/136 (27%)
Query: 9 GPPAKAKETGKRKSSSQPSPS------GPKKKTTKVAEKG-EAVRG-------------- 47
GPP TG + QP PS GP+ + +KG E RG
Sbjct: 1177 GPPGP---TGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLP 1233
Query: 48 GRRGKKGAATKMAAVTAPEAESGPAAP-GPSDQPSQELPQHELPPEEPVSEGTQHDPLSQ 106
G G+KG + + P GP P GPS P + PQ PP + G
Sbjct: 1234 GPPGEKGETGDVGQMGPP----GPPGPRGPSGAPGADGPQG--PPGGIGNPGA------- 1280
Query: 107 ESELEEPLSKGRPSTP 122
E EP G P P
Sbjct: 1281 VGEKGEPGEAGEPGLP 1296
Score = 27.3 bits (59), Expect = 3.1
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 2 SPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
S P S ++A+ ++ + P+GP T + G GG +G+ G
Sbjct: 534 SKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGD----VG 589
Query: 62 VTAPEAESGPAAPGPSDQPSQ 82
P GP PGP+ +P +
Sbjct: 590 PQGPRGVQGP--PGPAGKPGR 608
Score = 27.3 bits (59), Expect = 3.1
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAE 68
G P + G + P P+GP+ + G G RG++G + E
Sbjct: 1162 GEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQG----LFGQKGDEGP 1217
Query: 69 SG-PAAPGP 76
G P PGP
Sbjct: 1218 RGFPGPPGP 1226
Score = 26.9 bits (58), Expect = 4.0
Identities = 36/130 (27%), Positives = 43/130 (33%), Gaps = 8/130 (6%)
Query: 3 PKPRAS-GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAA 61
P PR G + + G R P P G + EKGE G+ G G
Sbjct: 1200 PGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGP 1259
Query: 62 VTAPEAESGPAAPGPSDQPSQELPQHELPPE--EP--VSEGTQHDPLSQESELEE--PLS 115
AP A+ PG P + E P E EP EG P + E E P
Sbjct: 1260 SGAPGADGPQGPPGGIGNPGAVGEKGE-PGEAGEPGLPGEGGPPGPKGERGEKGESGPSG 1318
Query: 116 KGRPSTPLSP 125
P P P
Sbjct: 1319 AAGPPGPKGP 1328
Score = 25.8 bits (55), Expect = 8.9
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 9 GPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAP--E 66
GPP K G + + +P P G + V E+G G G G M P +
Sbjct: 1417 GPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQG---LPGSPGPDGPPGPMGPPGLPGLK 1473
Query: 67 AESGP 71
+SGP
Sbjct: 1474 GDSGP 1478
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 38.9 bits (89), Expect = 0.001
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTK--VAEKGEAVRGGRRGKKGAA-TKMA 60
+P+A+ PA+AKE GK K +K+ K A K EA + +GAA K
Sbjct: 41 EPQAAAEPAEAKE-GKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAE 99
Query: 61 AVTAPEAESGPAAPGP-SDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRP 119
APE E AAPGP + + + + P E + +P +E E ++ + P
Sbjct: 100 PPKAPEQEQ--AAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAP 157
Query: 120 S 120
+
Sbjct: 158 A 158
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 38.9 bits (89), Expect = 0.001
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 22/133 (16%)
Query: 4 KPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKK-------GAA 56
KP A G PA + R+ + P KK + EK ++ R K
Sbjct: 393 KPNAGGSPAPVR----RRPEASPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASPR 448
Query: 57 TKMAAVTA----PEAESGPAAPGPS-DQPSQELPQ----HELPPEEPVSEGTQHDPLSQE 107
+++A TA P++++ P++P S +P+ P H LPP+ P GT P +
Sbjct: 449 ARLSASTASELSPKSKARPSSPSTSWHRPASPCPSPGPGHTLPPKPPSPRGTTASPKGRV 508
Query: 108 SELEEPLSKGRPS 120
EE +K PS
Sbjct: 509 RRKEE--AKESPS 519
Score = 38.1 bits (87), Expect = 0.002
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 32/125 (25%)
Query: 3 PKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAV 62
P PR + K + K ++ PS +GP+ +K ++ R K+ AA
Sbjct: 495 PSPRGTTASPKGRVRRKEEAKESPSAAGPE-------DKSQSKRRASNEKESAA------ 541
Query: 63 TAPEAESGPAAPGPSDQPSQEL--PQHELPPEEPVSEGTQHDPLSQESELEEPLSKGRPS 120
PA+P PS PS PQ E PP E ++ + L P + P
Sbjct: 542 --------PASPAPSPAPSPTPAPPQKEQPPAETPTDA---------AVLTSPPAPAPPV 584
Query: 121 TPLSP 125
TP P
Sbjct: 585 TPSKP 589
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.297 0.120 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,159,679
Number of Sequences: 37866
Number of extensions: 418731
Number of successful extensions: 5793
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 698
Number of HSP's that attempted gapping in prelim test: 2549
Number of HSP's gapped (non-prelim): 3143
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.