Guide to the Human Genome
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Name: VCY1B Sequence: fasta or formatted (125aa) NCBI GI: 49355828
Description:

variable charge, Y-linked 1B

Referenced in:

Testes and Sperm
Y-linked Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         13           2
 C cysteine            0.0          0           0
 D aspartate           1.6          2           1
 E glutamate          11.2         14           2
 F phenylalanine       0.0          0           0
 G glycine             9.6         12           2
 H histidine           1.6          2           1
 I isoleucine          0.0          0           0
 K lysine             11.2         14           3
 L leucine             4.8          6           1
 M methionine          1.6          2           1
 N asparagine          0.0          0           0
 P proline            16.8         21           2
 Q glutamine           4.8          6           1
 R arginine            4.8          6           2
 S serine             12.8         16           3
 T threonine           5.6          7           2
 V valine              3.2          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   variable charge, Y-linked 1B 
VCY                   1.000   variable charge, Y-linked 
VCX3B                 0.865   variable charge, X-linked 3B 
VCX3A                 0.852   variable charge, X-linked 3A 
VCX                   0.838   variable charge, X chromosome 
VCX2                  0.838   variable charge, X-linked 2 
NACA                  0.087   nascent polypeptide-associated complex alpha subuni...
AEBP1                 0.083   adipocyte enhancer binding protein 1 precursor [Homo...
COL7A1                0.083   alpha 1 type VII collagen precursor 
COLEC12               0.079   collectin sub-family member 12 
CASKIN2               0.079   cask-interacting protein 2 isoform b 
CASKIN2               0.079   cask-interacting protein 2 isoform a 
NEFH                  0.074   neurofilament, heavy polypeptide 200kDa 
COL2A1                0.074   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.074   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A2                0.074   alpha 2 type V collagen preproprotein 
COL9A3                0.070   alpha 3 type IX collagen 
COL1A1                0.070   alpha 1 type I collagen preproprotein 
MLL                   0.070   myeloid/lymphoid or mixed-lineage leukemia protein [...
LOC100293055          0.070   PREDICTED: similar to COL22A1 protein 
COL19A1               0.070   alpha 1 type XIX collagen precursor 
COL23A1               0.066   collagen, type XXIII, alpha 1 
COL22A1               0.066   collagen, type XXII, alpha 1 
COL16A1               0.066   alpha 1 type XVI collagen precursor 
COL3A1                0.061   collagen type III alpha 1 preproprotein 
PCLO                  0.061   piccolo isoform 2 
PCLO                  0.061   piccolo isoform 1 
COL5A1                0.061   alpha 1 type V collagen preproprotein 
BASP1                 0.061   brain abundant, membrane attached signal protein 1 [...
MAP7D1                0.061   MAP7 domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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