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Search of human proteins with 4759158
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo
sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo sa... 238 8e-64
gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo ... 219 4e-58
gi|17471847 PREDICTED: hypothetical protein LOC119358 [Homo sapi... 206 2e-54
gi|169201734 PREDICTED: similar to hCG2040270 [Homo sapiens] 203 2e-53
gi|89033538 PREDICTED: similar to hCG2040270 [Homo sapiens] 203 2e-53
gi|7657315 Lsm3 protein [Homo sapiens] 47 4e-06
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 33 0.063
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 33 0.063
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.063
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.063
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.063
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.063
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 33 0.063
gi|122937347 pleckstrin homology domain containing, family M, me... 31 0.18
gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform... 30 0.53
gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo s... 29 0.70
gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens] 28 1.2
gi|67944634 exocyst complex component 1 isoform 1 [Homo sapiens] 28 1.5
gi|30410716 exocyst complex component 1 isoform 2 [Homo sapiens] 28 1.5
gi|30410720 exocyst complex component 1 isoform 1 [Homo sapiens] 28 1.5
gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens] 28 2.0
gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens] 28 2.0
gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo ... 28 2.0
gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isofo... 28 2.0
gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isofo... 28 2.0
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens] 27 4.5
gi|21281683 multiple coagulation factor deficiency 2 [Homo sapiens] 27 4.5
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] 27 4.5
gi|166197690 neuronal guanine nucleotide exchange factor isoform... 26 5.9
gi|166197688 neuronal guanine nucleotide exchange factor isoform... 26 5.9
>gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo
sapiens]
Length = 118
Score = 238 bits (607), Expect = 8e-64
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118
RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118
>gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo
sapiens]
Length = 108
Score = 219 bits (558), Expect = 4e-58
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 11 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 70
MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV
Sbjct: 1 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 60
Query: 71 KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118
KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
Sbjct: 61 KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 108
>gi|17471847 PREDICTED: hypothetical protein LOC119358 [Homo
sapiens]
Length = 117
Score = 206 bits (525), Expect = 2e-54
Identities = 106/118 (89%), Positives = 108/118 (91%), Gaps = 1/118 (0%)
Query: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
MSLLNK KSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCR+N KLLG VKAF
Sbjct: 1 MSLLNKSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60
Query: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118
RHCNMVLENVKE WTEVPKSGKG KKSKPVNKD YIS+MFL GD VIVVLRNPLIA K
Sbjct: 61 RHCNMVLENVKETWTEVPKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
>gi|169201734 PREDICTED: similar to hCG2040270 [Homo sapiens]
Length = 117
Score = 203 bits (517), Expect = 2e-53
Identities = 105/118 (88%), Positives = 107/118 (90%), Gaps = 1/118 (0%)
Query: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
MSLLNK KSEMTPEELQKREEEEFNTG LSVLTQSVKNNTQVLINCR+N KLLG VKAF
Sbjct: 1 MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60
Query: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118
RHCNMVLENVKE WTEVPKSGKG KKSKPVNKD YIS+MFL GD VIVVLRNPLIA K
Sbjct: 61 RHCNMVLENVKETWTEVPKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
>gi|89033538 PREDICTED: similar to hCG2040270 [Homo sapiens]
Length = 117
Score = 203 bits (517), Expect = 2e-53
Identities = 105/118 (88%), Positives = 107/118 (90%), Gaps = 1/118 (0%)
Query: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
MSLLNK KSEMTPEELQKREEEEFNTG LSVLTQSVKNNTQVLINCR+N KLLG VKAF
Sbjct: 1 MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60
Query: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118
RHCNMVLENVKE WTEVPKSGKG KKSKPVNKD YIS+MFL GD VIVVLRNPLIA K
Sbjct: 61 RHCNMVLENVKETWTEVPKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
>gi|7657315 Lsm3 protein [Homo sapiens]
Length = 102
Score = 46.6 bits (109), Expect = 4e-06
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 88 KPVNKDRYISKMFLRGDSVIVV 109
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.063
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 47 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 107 I 107
+
Sbjct: 78 V 78
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 32.7 bits (73), Expect = 0.063
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 47 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 107 I 107
+
Sbjct: 78 V 78
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.063
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 47 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 107 I 107
+
Sbjct: 78 V 78
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.063
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 47 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 107 I 107
+
Sbjct: 78 V 78
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.063
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 47 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 107 I 107
+
Sbjct: 78 V 78
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.063
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 47 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 107 I 107
+
Sbjct: 78 V 78
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.063
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 47 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 107 I 107
+
Sbjct: 78 V 78
>gi|122937347 pleckstrin homology domain containing, family M,
member 3 [Homo sapiens]
Length = 761
Score = 31.2 bits (69), Expect = 0.18
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLT--QSVKNNTQVLINCRNNKKLLGRVKA 58
++L NKPK +M EL+K + + T LS+LT + T C ++ +G
Sbjct: 467 VTLRNKPKDQMGGHELRKNKRQSVTTSFLSILTTLSLERGLTAQSFKCAGCQRSIGLSNG 526
Query: 59 FDRHCN 64
+ CN
Sbjct: 527 KAKVCN 532
>gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform a
[Homo sapiens]
Length = 91
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 13/83 (15%)
Query: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
PL ++ + + + +++ +++K+++G + FD NMVLE+V TE + +G++ +
Sbjct: 14 PLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDV----TEFEITPEGRRIT 67
Query: 88 KPVNKDRYISKMFLRGDSVIVVL 110
K + ++ L G+++ +++
Sbjct: 68 K-------LDQILLNGNNITMLV 83
>gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
sapiens]
Length = 92
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/95 (20%), Positives = 52/95 (54%), Gaps = 15/95 (15%)
Query: 17 QKREEEEFNTGPLSVLTQSVKNNT--QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74
Q ++ ++ P++++ + ++N + QV + + N ++ G + FD + N+VL++ +E+
Sbjct: 6 QGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI- 64
Query: 75 TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 109
K KS+ + + ++ L+GD++ ++
Sbjct: 65 -------HSKTKSR-----KQLGRIMLKGDNITLL 87
>gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens]
Length = 630
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 68 ENVKEM----WTEVPKSGKGKKKSKPVNKDRYISKMF--LRGDSVI 107
E +KEM W + GK + +P+ KD Y MF L G +VI
Sbjct: 176 EKIKEMMQFAWQSYKRYAMGKNELRPLTKDGYEGNMFGGLSGATVI 221
>gi|67944634 exocyst complex component 1 isoform 1 [Homo sapiens]
Length = 894
Score = 28.1 bits (61), Expect = 1.5
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
M LL++ E+ EL+ EE + Q ++N + ++ NN KLL ++
Sbjct: 218 MKLLDEALKEVDQIELKLSSYEEMLQSVKEQMDQISESNHLIHLSNTNNVKLLSEIEFLV 277
Query: 61 RHCNMVLENVKEM 73
H ++ ++K +
Sbjct: 278 NHMDLAKGHIKAL 290
>gi|30410716 exocyst complex component 1 isoform 2 [Homo sapiens]
Length = 879
Score = 28.1 bits (61), Expect = 1.5
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
M LL++ E+ EL+ EE + Q ++N + ++ NN KLL ++
Sbjct: 218 MKLLDEALKEVDQIELKLSSYEEMLQSVKEQMDQISESNHLIHLSNTNNVKLLSEIEFLV 277
Query: 61 RHCNMVLENVKEM 73
H ++ ++K +
Sbjct: 278 NHMDLAKGHIKAL 290
>gi|30410720 exocyst complex component 1 isoform 1 [Homo sapiens]
Length = 894
Score = 28.1 bits (61), Expect = 1.5
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
M LL++ E+ EL+ EE + Q ++N + ++ NN KLL ++
Sbjct: 218 MKLLDEALKEVDQIELKLSSYEEMLQSVKEQMDQISESNHLIHLSNTNNVKLLSEIEFLV 277
Query: 61 RHCNMVLENVKEM 73
H ++ ++K +
Sbjct: 278 NHMDLAKGHIKAL 290
>gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/95 (20%), Positives = 51/95 (53%), Gaps = 15/95 (15%)
Query: 17 QKREEEEFNTGPLSVLTQSVKNNT--QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74
Q ++ ++ P+S++ + ++N + QV + + N ++ G + FD + N+VL++ +E+
Sbjct: 6 QGQKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI- 64
Query: 75 TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 109
K KS+ + + ++ L+G ++ ++
Sbjct: 65 -------HSKTKSR-----KQLGRIMLKGGNITLL 87
>gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/95 (20%), Positives = 51/95 (53%), Gaps = 15/95 (15%)
Query: 17 QKREEEEFNTGPLSVLTQSVKNNT--QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74
Q ++ ++ P+S++ + ++N + QV + + N ++ G + FD + N+VL++ +E+
Sbjct: 6 QGQKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI- 64
Query: 75 TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 109
K KS+ + + ++ L+G ++ ++
Sbjct: 65 -------HSKTKSR-----KQLGRIMLKGGNITLL 87
>gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo
sapiens]
Length = 92
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/95 (20%), Positives = 51/95 (53%), Gaps = 15/95 (15%)
Query: 17 QKREEEEFNTGPLSVLTQSVKNNT--QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74
Q ++ ++ P+S++ + ++N + QV + + N ++ G + FD + N+VL++ +E+
Sbjct: 6 QGQKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI- 64
Query: 75 TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 109
K KS+ + + ++ L+G ++ ++
Sbjct: 65 -------HSKTKSR-----KQLGRIMLKGGNITLL 87
>gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isoform
b [Homo sapiens]
Length = 62
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 11/64 (17%)
Query: 47 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106
+++K+++G + FD NMVLE+V TE + +G++ +K + ++ L G+++
Sbjct: 2 KSDKEIVGTLLGFDDFVNMVLEDV----TEFEITPEGRRITK-------LDQILLNGNNI 50
Query: 107 IVVL 110
+++
Sbjct: 51 TMLV 54
>gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isoform
b [Homo sapiens]
Length = 62
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 11/64 (17%)
Query: 47 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106
+++K+++G + FD NMVLE+V TE + +G++ +K + ++ L G+++
Sbjct: 2 KSDKEIVGTLLGFDDFVNMVLEDV----TEFEITPEGRRITK-------LDQILLNGNNI 50
Query: 107 IVVL 110
+++
Sbjct: 51 TMLV 54
>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
Length = 2964
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 29 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 85
+ +T SV N T + N K LG V A D+HC + + ++ K KG+K
Sbjct: 662 IHTITPSVVNFTSLFSNKPFLK--LGAVSASDKHCQVAESLSTSLQSKPLKKRKGRK 716
>gi|21281683 multiple coagulation factor deficiency 2 [Homo
sapiens]
Length = 146
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/15 (60%), Positives = 15/15 (100%)
Query: 3 LLNKPKSEMTPEELQ 17
++NKP++EM+P+ELQ
Sbjct: 59 VINKPEAEMSPQELQ 73
>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]
Length = 96
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 32 LTQSVKN--NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKP 89
+T +++N N V + + + ++G +K FD+ N++L+ E V S +G ++
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE---RVFSSSQGVEQV-- 55
Query: 90 VNKDRYISKMFLRGDSVIVV 109
+ +RGD+V V+
Sbjct: 56 -----VLGLYIVRGDNVAVI 70
>gi|166197690 neuronal guanine nucleotide exchange factor isoform 2
[Homo sapiens]
Length = 618
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 7 PKSEMTPEELQKREEEEFNTGP 28
P SE TPEE ++ EEEE P
Sbjct: 117 PASEDTPEEEEEEEEEEEPASP 138
>gi|166197688 neuronal guanine nucleotide exchange factor isoform 1
[Homo sapiens]
Length = 710
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 7 PKSEMTPEELQKREEEEFNTGP 28
P SE TPEE ++ EEEE P
Sbjct: 209 PASEDTPEEEEEEEEEEEPASP 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,583,802
Number of Sequences: 37866
Number of extensions: 180092
Number of successful extensions: 625
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 45
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.