Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100130109 Sequence: fasta or formatted (92aa) NCBI GI: 169213483
Description:

PREDICTED: hypothetical protein LOC100130109

Not currently referenced in the text

Other entries for this name:
alt mRNA {92aa} PREDICTED: similar to hCG23490
alt mRNA {92aa} PREDICTED: similar to hCG23490
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.2          2           1
 C cysteine            1.1          1           1
 D aspartate           3.3          3           2
 E glutamate           5.4          5           2
 F phenylalanine       2.2          2           1
 G glycine             7.6          7           2
 H histidine           1.1          1           1
 I isoleucine          9.8          9           2
 K lysine              6.5          6           1
 L leucine             9.8          9           2
 M methionine          5.4          5           1
 N asparagine          5.4          5           1
 P proline             1.1          1           1
 Q glutamine           9.8          9           1
 R arginine            7.6          7           1
 S serine              6.5          6           1
 T threonine           2.2          2           1
 V valine              7.6          7           1
 W tryptophan          1.1          1           1
 Y tyrosine            4.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100130109 
LOC100130109          1.000   PREDICTED: similar to hCG23490 
LOC100130109          1.000   PREDICTED: similar to hCG23490 
SNRPE                 0.975   small nuclear ribonucleoprotein polypeptide E 
LSM5                  0.113   LSM5 homolog, U6 small nuclear RNA associated isoform...
LSM5                  0.107   LSM5 homolog, U6 small nuclear RNA associated isofo...
LSM5                  0.107   LSM5 homolog, U6 small nuclear RNA associated isofo...
LOC100130932          0.082   small nuclear ribonucleoprotein G-like protein [Hom...
LOC100130932          0.082   PREDICTED: small nuclear ribonucleoprotein G-like p...
LOC100130932          0.082   PREDICTED: small nuclear ribonucleoprotein G-like p...
SNRPG                 0.075   small nuclear ribonucleoprotein polypeptide G 
LOC100132425          0.057   PREDICTED: similar to small nuclear ribonucleoprote...
LSM7                  0.050   U6 snRNA-associated Sm-like protein LSm7 
LSM8                  0.044   U6 snRNA-associated Sm-like protein LSm8 
SNRPB                 0.038   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.038   small nuclear ribonucleoprotein polypeptide B/B' isof...
SNRPN                 0.038   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.038   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.038   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.038   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.038   small nuclear ribonucleoprotein polypeptide N 
SNRPD2                0.019   small nuclear ribonucleoprotein D2 isoform 2 
SNRPD2                0.019   small nuclear ribonucleoprotein D2 isoform 1 
SNRPF                 0.019   small nuclear ribonucleoprotein polypeptide F 
LSM3                  0.013   Lsm3 protein 
NCOA4                 0.013   nuclear receptor coactivator 4 isoform 3 
NCOA4                 0.013   nuclear receptor coactivator 4 isoform 3 
NCOA4                 0.013   nuclear receptor coactivator 4 isoform 3 
NCOA4                 0.013   nuclear receptor coactivator 4 isoform 2 
NCOA4                 0.013   nuclear receptor coactivator 4 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press