Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MCFD2 Sequence: fasta or formatted (146aa) NCBI GI: 21281683
Description:

multiple coagulation factor deficiency 2

Referenced in:

Calmodulin and Calcium
Coagulation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         11           2
 C cysteine            1.4          2           1
 D aspartate           8.2         12           3
 E glutamate          10.3         15           2
 F phenylalanine       3.4          5           1
 G glycine             6.8         10           1
 H histidine           4.8          7           1
 I isoleucine          4.8          7           2
 K lysine              4.1          6           1
 L leucine            11.6         17           2
 M methionine          4.8          7           1
 N asparagine          4.8          7           2
 P proline             4.8          7           1
 Q glutamine           4.1          6           1
 R arginine            2.7          4           1
 S serine              6.2          9           1
 T threonine           3.4          5           1
 V valine              2.7          4           1
 W tryptophan          0.7          1           1
 Y tyrosine            2.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   multiple coagulation factor deficiency 2 
CGREF1                0.076   cell growth regulator with EF-hand domain 1 
CIB2                  0.072   DNA-dependent protein kinase catalytic subunit-intera...
CIB4                  0.058   calcium and integrin binding family member 4 
GUCA1B                0.051   guanylate cyclase activator 1B (retina) 
GUCA1A                0.047   guanylate cyclase activator 1A (retina) 
GUCA1C                0.047   guanylate cyclase activator 1C 
TNNC2                 0.043   fast skeletal muscle troponin C 
CHP2                  0.043   hepatocellular carcinoma antigen gene 520 
NUCB2                 0.043   nucleobindin 2 
CIB1                  0.043   calcium and integrin binding 1 
TNNC1                 0.036   troponin C, slow 
EFHB                  0.036   EF hand domain family, member B 
HPCAL1                0.036   hippocalcin-like 1 
HPCAL1                0.036   hippocalcin-like 1 
CALB2                 0.032   calbindin 2 isoform 1 
CALB2                 0.032   calbindin 2 isoform 22k 
CALM3                 0.032   calmodulin 3 
CALML3                0.032   calmodulin-like 3 
CALM2                 0.032   calmodulin 2 
CALM1                 0.032   calmodulin 1 
VSNL1                 0.032   visinin-like 1 
KCNIP1                0.032   Kv channel interacting protein 1 isoform 3 
KCNIP1                0.032   Kv channel interacting protein 1 isoform 1 
KCNIP1                0.032   Kv channel interacting protein 1 isoform 2 
NUCB1                 0.029   nucleobindin 1 
HPCA                  0.029   hippocalcin 
HPCAL4                0.025   hippocalcin-like protein 4 
CIT                   0.025   citron 
CALML5                0.022   calmodulin-like 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press