LSM3 35714

Name: LSM3	Sequence: fasta or formatted (102aa)		NCBI GI: 7657315
Description: Lsm3 protein		Referenced in: RNases and RNA Stability Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 2.9 3 1 C cysteine 0.0 0 0 D aspartate 9.8 10 2 E glutamate 10.8 11 2 F phenylalanine 1.0 1 1 G glycine 4.9 5 1 H histidine 2.0 2 1 I isoleucine 6.9 7 1 K lysine 2.9 3 1 L leucine 10.8 11 1 M methionine 3.9 4 1 N asparagine 3.9 4 1 P proline 3.9 4 2 Q glutamine 3.9 4 3 R arginine 8.8 9 1 S serine 2.0 2 1 T threonine 7.8 8 2 V valine 9.8 10 2 W tryptophan 0.0 0 0 Y tyrosine 3.9 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Lsm3 protein SNRPD2 0.123 small nuclear ribonucleoprotein D2 isoform 2 SNRPD2 0.123 small nuclear ribonucleoprotein D2 isoform 1 LSM5 0.112 LSM5 homolog, U6 small nuclear RNA associated isoform... LOC119358 0.061 PREDICTED: hypothetical protein LOC119358 LOC119358 0.056 PREDICTED: similar to hCG2040270 LOC119358 0.056 PREDICTED: similar to hCG2040270 LSM2 0.056 LSM2 homolog, U6 small nuclear RNA associated LSM5 0.050 LSM5 homolog, U6 small nuclear RNA associated isofo... LSM5 0.050 LSM5 homolog, U6 small nuclear RNA associated isofo... SNRPB 0.045 small nuclear ribonucleoprotein polypeptide B/B' iso... SNRPB 0.045 small nuclear ribonucleoprotein polypeptide B/B' isof... SVIL 0.045 supervillin isoform 2 SVIL 0.045 supervillin isoform 1 SNRPN 0.039 small nuclear ribonucleoprotein polypeptide N SNRPN 0.039 small nuclear ribonucleoprotein polypeptide N SNRPN 0.039 small nuclear ribonucleoprotein polypeptide N SNRPN 0.039 small nuclear ribonucleoprotein polypeptide N SNRPN 0.039 small nuclear ribonucleoprotein polypeptide N LOC100130932 0.039 small nuclear ribonucleoprotein G-like protein [Hom... LOC100130932 0.039 PREDICTED: small nuclear ribonucleoprotein G-like p... LOC100130932 0.039 PREDICTED: small nuclear ribonucleoprotein G-like p... SNRPE 0.022 small nuclear ribonucleoprotein polypeptide E LSM6 0.022 Sm protein F CLSPN 0.022 claspin KRT222P 0.017 truncated type I keratin KA21 LOC100130109 0.011 PREDICTED: similar to hCG23490 LOC100130109 0.011 PREDICTED: similar to hCG23490 LOC100130109 0.011 PREDICTED: hypothetical protein LOC100130109 NISCH 0.011 nischarin Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.