Guide to the Human Genome
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Name: MAN1C1 Sequence: fasta or formatted (630aa) NCBI GI: 9966903
Description:

mannosidase, alpha, class 1C, member 1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         52           2
 C cysteine            0.6          4           1
 D aspartate           3.0         19           2
 E glutamate           8.4         53           2
 F phenylalanine       5.4         34           2
 G glycine             8.6         54           2
 H histidine           2.7         17           2
 I isoleucine          3.3         21           1
 K lysine              4.8         30           1
 L leucine            11.0         69           2
 M methionine          2.1         13           2
 N asparagine          3.3         21           1
 P proline             6.0         38           3
 Q glutamine           3.0         19           2
 R arginine            6.5         41           3
 S serine              7.8         49           3
 T threonine           4.1         26           1
 V valine              4.9         31           2
 W tryptophan          2.4         15           1
 Y tyrosine            3.8         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mannosidase, alpha, class 1C, member 1 
MAN1A1                0.503   mannosidase, alpha, class 1A, member 1 
MAN1A2                0.480   mannosidase, alpha, class 1A, member 2 
MAN1B1                0.232   alpha 1,2-mannosidase 
EDEM2                 0.130   ER degradation enhancer, mannosidase alpha-like 2 i...
EDEM3                 0.118   ER degradation enhancer, mannosidase alpha-like 3 [...
EDEM2                 0.111   ER degradation enhancer, mannosidase alpha-like 2 i...
EDEM1                 0.104   ER degradation enhancer, mannosidase alpha-like 1 [Ho...
HCN2                  0.013   hyperpolarization activated cyclic nucleotide-gated...
LOC100129129          0.012   PREDICTED: hypothetical protein 
LOC100290263          0.010   PREDICTED: hypothetical protein XP_002347916 
DLX3                  0.009   distal-less homeobox 3 
SETBP1                0.009   SET binding protein 1 isoform a 
FAM71E2               0.009   hypothetical protein LOC284418 
SCAF1                 0.009   SR-related CTD-associated factor 1 
RAPH1                 0.009   Ras association and pleckstrin homology domains 1 is...
LMTK3                 0.009   lemur tyrosine kinase 3 
ZNF197                0.009   zinc finger protein 197 isoform 1 
ZNF197                0.009   zinc finger protein 197 isoform 2 
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 2 
RALGDS                0.009   ral guanine nucleotide dissociation stimulator isofo...
RALGDS                0.009   ral guanine nucleotide dissociation stimulator isof...
C9orf75               0.009   hypothetical protein LOC286262 isoform 2 
C9orf75               0.009   hypothetical protein LOC286262 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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