LSM8 36162

Name: LSM8	Sequence: fasta or formatted (96aa)		NCBI GI: 7706425
Description: U6 snRNA-associated Sm-like protein LSm8		Referenced in: Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.2 6 1 C cysteine 0.0 0 0 D aspartate 7.3 7 1 E glutamate 8.3 8 2 F phenylalanine 2.1 2 1 G glycine 8.3 8 1 H histidine 2.1 2 1 I isoleucine 9.4 9 1 K lysine 1.0 1 1 L leucine 9.4 9 1 M methionine 2.1 2 1 N asparagine 6.2 6 1 P proline 1.0 1 1 Q glutamine 3.1 3 1 R arginine 5.2 5 1 S serine 8.3 8 3 T threonine 6.2 6 1 V valine 11.5 11 2 W tryptophan 0.0 0 0 Y tyrosine 2.1 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 U6 snRNA-associated Sm-like protein LSm8 LSM1 0.205 Lsm1 protein SNRPB 0.112 small nuclear ribonucleoprotein polypeptide B/B' iso... SNRPB 0.112 small nuclear ribonucleoprotein polypeptide B/B' isof... SNRPN 0.106 small nuclear ribonucleoprotein polypeptide N SNRPN 0.106 small nuclear ribonucleoprotein polypeptide N SNRPN 0.106 small nuclear ribonucleoprotein polypeptide N SNRPN 0.106 small nuclear ribonucleoprotein polypeptide N SNRPN 0.106 small nuclear ribonucleoprotein polypeptide N LSM7 0.106 U6 snRNA-associated Sm-like protein LSm7 SNRPG 0.106 small nuclear ribonucleoprotein polypeptide G LOC100130932 0.081 small nuclear ribonucleoprotein G-like protein [Hom... LOC100130932 0.081 PREDICTED: small nuclear ribonucleoprotein G-like p... LOC100130932 0.081 PREDICTED: small nuclear ribonucleoprotein G-like p... LSMD1 0.075 LSM domain containing 1 SNRPE 0.062 small nuclear ribonucleoprotein polypeptide E LOC100132425 0.062 PREDICTED: similar to small nuclear ribonucleoprote... LSM5 0.050 LSM5 homolog, U6 small nuclear RNA associated isoform... LOC100133224 0.043 PREDICTED: similar to hCG2041320 LOC100133224 0.043 PREDICTED: similar to hCG2041320 LOC100133224 0.043 PREDICTED: similar to hCG2041320 LOC100130109 0.043 PREDICTED: similar to hCG23490 LOC100130109 0.043 PREDICTED: similar to hCG23490 LOC100130109 0.043 PREDICTED: hypothetical protein LOC100130109 LSM5 0.031 LSM5 homolog, U6 small nuclear RNA associated isofo... LSM5 0.031 LSM5 homolog, U6 small nuclear RNA associated isofo... ATXN2 0.019 ataxin 2 SNRPD2 0.012 small nuclear ribonucleoprotein D2 isoform 2 SNRPD2 0.012 small nuclear ribonucleoprotein D2 isoform 1 LOC100128354 0.012 PREDICTED: similar to small nuclear ribonucleoprote... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.