LSM5 34935

Name: LSM5	Sequence: fasta or formatted (91aa)		NCBI GI: 6912488
Description: LSM5 homolog, U6 small nuclear RNA associated isoform a		Referenced in: RNases and RNA Stability Capping and Splicing
Other entries for this name: alt prot [62aa] LSM5 homolog, U6 small nuclear RNA associated isoform b alt prot [62aa] LSM5 homolog, U6 small nuclear RNA associated isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.3 3 2 C cysteine 1.1 1 1 D aspartate 6.6 6 2 E glutamate 8.8 8 1 F phenylalanine 3.3 3 1 G glycine 8.8 8 2 H histidine 1.1 1 1 I isoleucine 8.8 8 1 K lysine 4.4 4 1 L leucine 12.1 11 2 M methionine 4.4 4 1 N asparagine 6.6 6 2 P proline 5.5 5 1 Q glutamine 2.2 2 1 R arginine 3.3 3 2 S serine 3.3 3 1 T threonine 7.7 7 2 V valine 8.8 8 1 W tryptophan 0.0 0 0 Y tyrosine 0.0 0 0			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LSM5 homolog, U6 small nuclear RNA associated isoform... LSM5 0.643 LSM5 homolog, U6 small nuclear RNA associated isofo... LSM5 0.643 LSM5 homolog, U6 small nuclear RNA associated isofo... LSM3 0.127 Lsm3 protein SNRPE 0.121 small nuclear ribonucleoprotein polypeptide E LOC100130109 0.115 PREDICTED: similar to hCG23490 LOC100130109 0.115 PREDICTED: similar to hCG23490 LOC100130109 0.115 PREDICTED: hypothetical protein LOC100130109 SNRPG 0.070 small nuclear ribonucleoprotein polypeptide G LOC100130932 0.057 small nuclear ribonucleoprotein G-like protein [Hom... LOC100130932 0.057 PREDICTED: small nuclear ribonucleoprotein G-like p... LOC100130932 0.057 PREDICTED: small nuclear ribonucleoprotein G-like p... SNRPB 0.057 small nuclear ribonucleoprotein polypeptide B/B' iso... SNRPB 0.057 small nuclear ribonucleoprotein polypeptide B/B' isof... SNRPN 0.051 small nuclear ribonucleoprotein polypeptide N SNRPN 0.051 small nuclear ribonucleoprotein polypeptide N SNRPN 0.051 small nuclear ribonucleoprotein polypeptide N SNRPN 0.051 small nuclear ribonucleoprotein polypeptide N SNRPN 0.051 small nuclear ribonucleoprotein polypeptide N LSM7 0.051 U6 snRNA-associated Sm-like protein LSm7 LOC100129492 0.051 PREDICTED: similar to small nuclear ribonucleoprote... LSM8 0.051 U6 snRNA-associated Sm-like protein LSm8 LOC100133224 0.032 PREDICTED: similar to hCG2041320 LOC100133224 0.032 PREDICTED: similar to hCG2041320 LOC100133224 0.032 PREDICTED: similar to hCG2041320 LOC100132425 0.032 PREDICTED: similar to small nuclear ribonucleoprote... SNRPD2 0.032 small nuclear ribonucleoprotein D2 isoform 2 SNRPD2 0.032 small nuclear ribonucleoprotein D2 isoform 1 SLITRK6 0.032 slit and trk like 6 LSM2 0.019 LSM2 homolog, U6 small nuclear RNA associated Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.