Guide to the Human Genome
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Name: EXOC1 Sequence: fasta or formatted (894aa) NCBI GI: 67944634
Description:

exocyst complex component 1 isoform 1

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [879aa] exocyst complex component 1 isoform 2
alt mRNA [894aa] exocyst complex component 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         58           2
 C cysteine            1.7         15           1
 D aspartate           5.4         48           1
 E glutamate           9.1         81           3
 F phenylalanine       4.3         38           2
 G glycine             4.3         38           2
 H histidine           2.9         26           2
 I isoleucine          5.3         47           1
 K lysine              8.8         79           4
 L leucine            10.5         94           3
 M methionine          2.9         26           2
 N asparagine          4.7         42           2
 P proline             2.1         19           1
 Q glutamine           5.6         50           4
 R arginine            4.3         38           2
 S serine              8.2         73           3
 T threonine           3.8         34           2
 V valine              6.6         59           2
 W tryptophan          0.7          6           1
 Y tyrosine            2.6         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   exocyst complex component 1 isoform 1 
EXOC1                 1.000   exocyst complex component 1 isoform 1 
EXOC1                 0.977   exocyst complex component 1 isoform 2 
STXBP6                0.035   amisyn 
GOLGA4                0.017   golgi autoantigen, golgin subfamily a, 4 
DCTN1                 0.010   dynactin 1 isoform 4 
DCTN1                 0.010   dynactin 1 isoform 3 
DCTN1                 0.010   dynactin 1 isoform 2 
DCTN1                 0.010   dynactin 1 isoform 1 
CDC42BPA              0.010   CDC42-binding protein kinase alpha isoform B 
CDC42BPA              0.010   CDC42-binding protein kinase alpha isoform A 
TPM1                  0.010   tropomyosin 1 alpha chain isoform 3 
TPM1                  0.009   tropomyosin 1 alpha chain isoform 1 
KTN1                  0.009   kinectin 1 isoform b 
MACF1                 0.009   microfilament and actin filament cross-linker protei...
SYNE1                 0.009   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.009   spectrin repeat containing, nuclear envelope 1 isof...
PLEC1                 0.008   plectin 1 isoform 11 
PLEC1                 0.008   plectin 1 isoform 10 
PLEC1                 0.008   plectin 1 isoform 8 
PLEC1                 0.008   plectin 1 isoform 7 
PLEC1                 0.008   plectin 1 isoform 6 
PLEC1                 0.008   plectin 1 isoform 3 
PLEC1                 0.008   plectin 1 isoform 2 
PLEC1                 0.008   plectin 1 isoform 1 
GOLGB1                0.008   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH7                  0.008   myosin, heavy chain 7, cardiac muscle, beta 
CLIP1                 0.008   restin isoform b 
CLIP1                 0.008   restin isoform a 
CENPE                 0.008   centromere protein E 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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