Guide to the Human Genome
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Name: LOC119358 Sequence: fasta or formatted (117aa) NCBI GI: 89033538
Description:

PREDICTED: similar to hCG2040270

Referenced in:

Capping and Splicing

Other entries for this name:
alt mRNA [117aa] PREDICTED: similar to hCG2040270
alt prot [117aa] PREDICTED: hypothetical protein LOC119358
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.7          2           1
 C cysteine            2.6          3           1
 D aspartate           1.7          2           1
 E glutamate           8.5         10           4
 F phenylalanine       2.6          3           1
 G glycine             4.3          5           1
 H histidine           4.3          5           1
 I isoleucine          3.4          4           1
 K lysine             12.0         14           2
 L leucine            11.1         13           2
 M methionine          3.4          4           1
 N asparagine          8.5         10           2
 P proline             3.4          4           1
 Q glutamine           3.4          4           1
 R arginine            4.3          5           1
 S serine              7.7          9           1
 T threonine           6.0          7           1
 V valine              9.4         11           2
 W tryptophan          0.9          1           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040270 
LOC119358             1.000   PREDICTED: similar to hCG2040270 
LOC119358             0.986   PREDICTED: hypothetical protein LOC119358 
SNRPD2                0.832   small nuclear ribonucleoprotein D2 isoform 1 
SNRPD2                0.757   small nuclear ribonucleoprotein D2 isoform 2 
LSM3                  0.047   Lsm3 protein 
GCC2                  0.014   GRIP and coiled-coil domain-containing 2 
RNF216                0.014   ring finger protein 216 isoform b 
RNF216                0.014   ring finger protein 216 isoform a 
KNTC1                 0.009   Rough Deal homolog, centromere/kinetochore protein [H...
LOC100291947          0.009   PREDICTED: hypothetical protein XP_002345753 
YSK4                  0.005   Yeast Sps1/Ste20-related kinase 4 isoform 2 
ZNF532                0.005   zinc finger protein 532 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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