Guide to the Human Genome
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Name: LSM5 Sequence: fasta or formatted (62aa) NCBI GI: 195222722
Description:

LSM5 homolog, U6 small nuclear RNA associated isoform b

Referenced in:

RNases and RNA Stability
Capping and Splicing

Other entries for this name:
alt mRNA [62aa] LSM5 homolog, U6 small nuclear RNA associated isoform b
alt prot [91aa] LSM5 homolog, U6 small nuclear RNA associated isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            0.0          0           0
 D aspartate           8.1          5           2
 E glutamate          11.3          7           1
 F phenylalanine       4.8          3           1
 G glycine            11.3          7           2
 H histidine           0.0          0           0
 I isoleucine          8.1          5           1
 K lysine              4.8          3           1
 L leucine            11.3          7           2
 M methionine          4.8          3           1
 N asparagine          6.5          4           2
 P proline             4.8          3           1
 Q glutamine           1.6          1           1
 R arginine            3.2          2           2
 S serine              1.6          1           1
 T threonine           8.1          5           1
 V valine              9.7          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LSM5 homolog, U6 small nuclear RNA associated isofo... 
LSM5                  1.000   LSM5 homolog, U6 small nuclear RNA associated isofo...
LSM5                  1.000   LSM5 homolog, U6 small nuclear RNA associated isoform...
SNRPE                 0.168   small nuclear ribonucleoprotein polypeptide E 
LOC100130109          0.168   PREDICTED: similar to hCG23490 
LOC100130109          0.168   PREDICTED: similar to hCG23490 
LOC100130109          0.168   PREDICTED: hypothetical protein LOC100130109 
LSM3                  0.089   Lsm3 protein 
SNRPG                 0.079   small nuclear ribonucleoprotein polypeptide G 
LOC100130932          0.079   small nuclear ribonucleoprotein G-like protein [Hom...
LOC100130932          0.079   PREDICTED: small nuclear ribonucleoprotein G-like p...
LOC100130932          0.079   PREDICTED: small nuclear ribonucleoprotein G-like p...
LOC100129492          0.059   PREDICTED: similar to small nuclear ribonucleoprote...
SNRPB                 0.050   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.050   small nuclear ribonucleoprotein polypeptide B/B' isof...
SNRPN                 0.050   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.050   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.050   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.050   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.050   small nuclear ribonucleoprotein polypeptide N 
LSM8                  0.050   U6 snRNA-associated Sm-like protein LSm8 
LOC100132425          0.040   PREDICTED: similar to small nuclear ribonucleoprote...
LSM7                  0.040   U6 snRNA-associated Sm-like protein LSm7 
LOC100133224          0.030   PREDICTED: similar to hCG2041320 
LOC100133224          0.030   PREDICTED: similar to hCG2041320 
LOC100133224          0.030   PREDICTED: similar to hCG2041320 
SNRPD2                0.030   small nuclear ribonucleoprotein D2 isoform 2 
SNRPD2                0.030   small nuclear ribonucleoprotein D2 isoform 1 
MFN1                  0.020   mitofusin 1 
LOC100128354          0.010   PREDICTED: similar to small nuclear ribonucleoprote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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