Guide to the Human Genome
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Name: SNRPN Sequence: fasta or formatted (240aa) NCBI GI: 4507135
Description:

small nuclear ribonucleoprotein polypeptide N

Referenced in:

Small RNAs in RNA Processing
Capping and Splicing

Other entries for this name:
alt mRNA [240aa] small nuclear ribonucleoprotein polypeptide N
alt mRNA [240aa] small nuclear ribonucleoprotein polypeptide N
alt mRNA [240aa] small nuclear ribonucleoprotein polypeptide N
alt mRNA [240aa] small nuclear ribonucleoprotein polypeptide N
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         24           4
 C cysteine            1.2          3           1
 D aspartate           2.5          6           1
 E glutamate           2.5          6           2
 F phenylalanine       1.7          4           1
 G glycine            15.0         36           2
 H histidine           0.8          2           1
 I isoleucine          5.4         13           1
 K lysine              4.2         10           1
 L leucine             5.0         12           2
 M methionine          5.0         12           1
 N asparagine          1.2          3           1
 P proline            20.0         48           4
 Q glutamine           3.3          8           2
 R arginine            8.3         20           1
 S serine              2.1          5           2
 T threonine           4.6         11           1
 V valine              6.2         15           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 1.000   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 1.000   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 1.000   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 1.000   small nuclear ribonucleoprotein polypeptide N 
SNRPB                 0.952   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.896   small nuclear ribonucleoprotein polypeptide B/B' isof...
LOC100133224          0.449   PREDICTED: similar to hCG2041320 
LOC100133224          0.449   PREDICTED: similar to hCG2041320 
LOC100133224          0.449   PREDICTED: similar to hCG2041320 
SF3A2                 0.109   splicing factor 3a, subunit 2 
FMN2                  0.102   formin 2 
CPSF6                 0.100   cleavage and polyadenylation specific factor 6, 68 ...
SAMD1                 0.098   sterile alpha motif domain containing 1 
SF3B4                 0.096   splicing factor 3b, subunit 4 
WBP11                 0.096   WW domain binding protein 11 
ANXA11                0.090   annexin A11 
ANXA11                0.090   annexin A11 
ANXA11                0.090   annexin A11 
FMN1                  0.088   formin 1 
NACA                  0.088   nascent polypeptide-associated complex alpha subuni...
COL4A3                0.084   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.084   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.084   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.084   alpha 3 type IV collagen isoform 1 precursor 
SETD1B                0.084   SET domain containing 1B 
SFPQ                  0.084   splicing factor proline/glutamine rich (polypyrimidin...
COL17A1               0.081   alpha 1 type XVII collagen 
SMARCC2               0.081   SWI/SNF-related matrix-associated actin-dependent re...
PRB3                  0.081   proline-rich protein BstNI subfamily 3 precursor [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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