LSM5 12855

Name: LSM5	Sequence: fasta or formatted (62aa)		NCBI GI: 213385305
Description: LSM5 homolog, U6 small nuclear RNA associated isoform b		Referenced in: RNases and RNA Stability Capping and Splicing
Other entries for this name: alt mRNA [62aa] LSM5 homolog, U6 small nuclear RNA associated isoform b alt prot [91aa] LSM5 homolog, U6 small nuclear RNA associated isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 0.0 0 0 C cysteine 0.0 0 0 D aspartate 8.1 5 2 E glutamate 11.3 7 1 F phenylalanine 4.8 3 1 G glycine 11.3 7 2 H histidine 0.0 0 0 I isoleucine 8.1 5 1 K lysine 4.8 3 1 L leucine 11.3 7 2 M methionine 4.8 3 1 N asparagine 6.5 4 2 P proline 4.8 3 1 Q glutamine 1.6 1 1 R arginine 3.2 2 2 S serine 1.6 1 1 T threonine 8.1 5 1 V valine 9.7 6 1 W tryptophan 0.0 0 0 Y tyrosine 0.0 0 0			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LSM5 homolog, U6 small nuclear RNA associated isofo... LSM5 1.000 LSM5 homolog, U6 small nuclear RNA associated isofo... LSM5 1.000 LSM5 homolog, U6 small nuclear RNA associated isoform... SNRPE 0.168 small nuclear ribonucleoprotein polypeptide E LOC100130109 0.168 PREDICTED: similar to hCG23490 LOC100130109 0.168 PREDICTED: similar to hCG23490 LOC100130109 0.168 PREDICTED: hypothetical protein LOC100130109 LSM3 0.089 Lsm3 protein SNRPG 0.079 small nuclear ribonucleoprotein polypeptide G LOC100130932 0.079 small nuclear ribonucleoprotein G-like protein [Hom... LOC100130932 0.079 PREDICTED: small nuclear ribonucleoprotein G-like p... LOC100130932 0.079 PREDICTED: small nuclear ribonucleoprotein G-like p... LOC100129492 0.059 PREDICTED: similar to small nuclear ribonucleoprote... SNRPB 0.050 small nuclear ribonucleoprotein polypeptide B/B' iso... SNRPB 0.050 small nuclear ribonucleoprotein polypeptide B/B' isof... SNRPN 0.050 small nuclear ribonucleoprotein polypeptide N SNRPN 0.050 small nuclear ribonucleoprotein polypeptide N SNRPN 0.050 small nuclear ribonucleoprotein polypeptide N SNRPN 0.050 small nuclear ribonucleoprotein polypeptide N SNRPN 0.050 small nuclear ribonucleoprotein polypeptide N LSM8 0.050 U6 snRNA-associated Sm-like protein LSm8 LOC100132425 0.040 PREDICTED: similar to small nuclear ribonucleoprote... LSM7 0.040 U6 snRNA-associated Sm-like protein LSm7 LOC100133224 0.030 PREDICTED: similar to hCG2041320 LOC100133224 0.030 PREDICTED: similar to hCG2041320 LOC100133224 0.030 PREDICTED: similar to hCG2041320 SNRPD2 0.030 small nuclear ribonucleoprotein D2 isoform 2 SNRPD2 0.030 small nuclear ribonucleoprotein D2 isoform 1 MFN1 0.020 mitofusin 1 LOC100128354 0.010 PREDICTED: similar to small nuclear ribonucleoprote... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.